GBrowse Details

Vigan.03G062000.01

Basic Information:
Name: Vigan.03G062000.01
Multiple alignment
Variant Information
Position: Chr03:6062255..6066132 (- strand)
Length: 3878
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIK1, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
InterPro: Glycoside hydrolase, family 9 (IPR001701)
Six-hairpin glycosidase-like (IPR008928)
Six-hairpin glycosidase (IPR012341)
Glycoside hydrolase, family 9, active site (IPR018221)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.00,9.33,0.88,0.09,10.47,0.73,8.05
Arabidopsis thaliana homolog: AT1G48930.1, AT1G64390.1, AT2G32990.1, AT4G11050.1
Automatic updates:
Name: AB928216 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mRNA for endo-1,4-beta-glucanase, complete cds, cultivar: Tachinagaha.
PubMed ID: 26039079 NCBI(pubmed)
Status: Known Variant
Name: AB928217 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mRNA for endo-1,4-beta-glucanase, complete cds, strain: TA-HS.
PubMed ID: 26039079 NCBI(pubmed)
Status: Known Variant
Name: NM_001354846 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max endo-1,4-beta-glucanase (LOC100817996), mRNA.
PubMed ID: 26039079 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:6062255..6062649 (- strand)
Length: 395
Type: three_prime_UTR
Position: Chr03:6062650..6063321 (- strand)
Length: 672
Type: CDS
Position: Chr03:6064284..6064538 (- strand)
Length: 255
Type: CDS
Position: Chr03:6064826..6065026 (- strand)
Length: 201
Type: CDS
Position: Chr03:6065211..6065423 (- strand)
Length: 213
Type: CDS
Position: Chr03:6065541..6065795 (- strand)
Length: 255
Type: CDS
Position: Chr03:6065796..6066132 (- strand)
Length: 337
Type: five_prime_UTR

>Vigan.03G062000.01 class=Sequence position=Chr03:6062255..6066132 (- strand)
GAGGTGGCAT GAAATGACAG TGGAATTTTA ACAAAAAGTC AACAGAAACT GGTGTTATTT TCCTAATTTG GCAGACAGAG
GCACATAAAG TGCTGCAAAA TTCACCTTTG TACAAGAAAC AAGTAAAACT TGTGGGGATA GTTTCACGTT CTCATTTTGT
GGGGCTCTCT CCCAAAATGA TCCCACCCTA ATTTAGCTAG ATCGTAGGCA TATCTCAGCC TTTTAAAACA CAATTCAAAC
TCCCATTTGA GGCTCTAGTG TTGTGAGTCT TCACCCTTTT TTTTACCAAT TCCCTCCACT CCTAAAATCT CTCTAGGAGG
GAAGGGGGGG CAAGGCAATG AAGATGGAGA CACAACCACA TAAGAAACAC CATTTTGGAA CTTCCCACAT GCCCTTTCTA
GTACAGCATT GTTGTCTCAT CATCACCCTC TTAATCTCCA CCCTCTTCAG CATCACCACT GCTTTTGATT ATGCTGATGC
CCTTTCAAAG AGTCTTCTCT ACTTCGAAGC ACAACGCTCT GGTAGAATAC CTTACAATCA GCGTGTCACT TGGAGAGACC
ATTCTGGCCT CACAGATGGT TTGGAAGAAG GGGTAGGACC AAATTCTCAA TTATACCCAC ATGCCACAAC TCATCAACCT
TTGTCTTTTA CTTTCCTGGT TTGCCAAATT CCCTCTAAAA ATCGTAACTT TTTTTTTGGG TTTGTGTAGG TGGATTTGGT
GGGAGGGTAT TATGATGCAG GGGATCATGT GAAATTTGGT TTACCAATGG CATTCACCAT CACAATGCTT TCATGGAGTG
CCATAGAGTA CAGGCAACAG ATTGAAGAGG CAGGTGAATT ACAACACACA TTGGAGGCCA TCAAATGGGG CACTGATTAT
TTCATCAAAG CTCACACAAG CCCAAATGTC CTATGGGCTG AGGTACTAAC TAATTCAACA GAAAATCTAT GGTAATTTCA
GAAGTTTAAG GATTCTGATA TATTGTTATC AAAGAACAAC CATACCAAAA TTTTTAGACT TTTGTGGCTA CCGTATCATC
TCTTCCAATT CATCATTCTC AATGTTTTAC ATTAAATGGA ATTCTTAAAT TAACTACCTT TTTCAGGTGG GTGATGGTGA
CACTGACCAT TATTGTTGGC AACGGCCAGA GGACATGACG ACTTCACGGC GGGCGTTTAA GATCGAGGAG AACAATCCCG
GTTCAGATCT GGCCGGAGAG ACTGCAGCAG CTATGGCAGC TGCATCCATT GTGTTCAAAA AAACAAACGC ACATTACTCT
CACTTGCTTC TGCACCATGC CCTGCAGGTG AGTTAATGAG TGATTAGTCA AATTCTTTCT GTGCTAATTA AAGTTTGATC
GGTTTTGACT GGGTGCCATA ATTAATAATA ATTGTATAAT TGTAGGAGCA CTTTTGTATG ACAATCTCAG TTTCAAAACT
AATAATTGGG TAGGAGAAAT TAAGGTTAAC CAGTGTTGCT AATGAGGATA ATTAGAATAG AATAGAACAG TTTATAAGGT
ATGATTAGAT TAAGAATGAG AATTGAATGT TTAAATGAAT GAATAGTAGT ATTTATTGTG TGTGCATTTT GTAGTTGTTC
GAGTTTGGGG ACAAGTATAG GGGAAATTAT GATGCTAGTG TCGGAGTGGT AAAGAGCTAC TATGCGTCGG TGAGTGGATA
CATGGATGAG TTGTTGTGGG CTGCCACGTG GCTGTACAAA GCCACCGACA ACAAAATGTA TTTTGAGTAC GTTCTTTCCA
ACGCTCACAA ATTTGGTGGC ACTGGTTGGT CCATTTCAGA ATTCAGCTGG GATGTTAAGT ACGCTGGTCT TCAACTCATG
CTCTCAAAGG TAAAAACTTT CCCTCATTTT ACTTAATTTT CTCCATGTGA CTCCCACTTT TCTGTGAATC CAACTTTATA
TAGGTTTTGC TTTTCTAACC TCAAAAATAT AAATCATGGA GTATGCACCA ATTAAGGTAT ATTAATTACT ATATTAAAGA
CAGAAACTAT AAAGTCTGTC CAAGCACAAT GCCATGTGCA GCTACTGCTT TAGCTTTGCA ACAGTGTGCA ATTAAAGTGG
TGTGGTTTAT GGTTGAGCCC AATGTTGGAA ACCTTAAGTA CTGATACCCT TCAGCCCCTC ACTTCATTAC ACACTCCTTT
TTTTACCCTT TTAATAAATA GTAGTAAATG AGTGATGAGG TAGGACATCC TTTGGACCCC TTTGGGTAGA AAATAAAACA
TGTGAAAAAT AAGTTAAATG GAAATTAGTA AAAAAAATAT GGTCAAAATA AAAGTGTTTT AATTATAAAA ATTTTATATA
TTATAAAATG AAATCAAAAT AATTCAAGGA ATTACCCCTG TCAAATATTT TTACTTATCT TAACCTATTT GCCAAGAATA
CGTACGTCTT TCTCTGTATC TCATGCAAGT TCTCATAAAA ATAAAAAATC ATTATTTTTG TCTTATGAGG ACACATAAAT
GAATGATATC CAAACTGAAA ATCTGGTTCA TTCAGTTGTT TAGATAACAC CCATTATTAA TCTGATCGGT TAAAAAAACA
ACTGATTTAA TGTAATGAAA CCCAAATTCA ATTAGATTGT TGAACTCTAT AATTAGACTT GACCCCACCC ATGTGTACAC
TTTTTTTTAG TGAGAATAAA GATTACACTG CACAGACTAT GATTTGAACA TCTTGGAATC TATCTGAAGG AATGATTAAC
TTAGAATGAA ATGTCAACAA ACGAGAAGTG GGTTAACAAA TAGTAATGTA CGTAGTGTTT GCACTCTAAC CAGAGTTTCA
TGTTTTTGCA GCTCTTGAGG GAAGAAAAAG AGAAGAAGCA TAGGACTATA CTTGAACAAT ACAGAACAAA AGCAGAGTAC
TACGTATGTT CATGTCTGAA CAAAAATAAC GACAGCAAGG ATAACGTGGA ACGAACCCCT GGTGGACTGC TCTATATCCG
AGAGTGGAAC AACATGCAAT ATGTTTCAAC AGCAGCATTT CTGCTTTCAA CGTACTCTGA TTATCTTGAG AACACAAATC
AAAAGCTGAA TTGCGAAACG GGTACAGTGG ATCATGAAGA AATTCAGAGT TTTGCTAAAT CACAGGTTGA TTACATTTTG
GGGTCCAATC CAATGAACAT GAGCTATTTA GTAGGGTATG GCCCTAAGTA CCCGAAAAGG GTTCACCACA GAGGGGCATC
CATTCTGTCA TACAAAAAGA ATAAAGGGTT CATAGGGTGT ACTCAAGGGT ATGATAACTG GTATGGTAGC CAAGAACCTA
ATCCTAATGT TCTTGTTGGG GCTTTGGTTG GAGGGCCTGA TGGGAAAGAC AATTTTGAGG ATCGAAGGAA CAATTTTATG
CAGACTGAAG CATGCACATA TAATACTGCT CCCTTGGTTG GTGTTTTTGC AAAGTTCTTG CATATAGAAA ACCACAAAAC
AGTTCATGAC TGTAATTCAC TTTTGCTTGC TTCTTTCAAA TAATATATAC TATACTATTA ATACAGTATA TGTTATCATA
AATAAGTCAA AACCCAACTT CTTTTCAATT ATTTTTTTTC CTCATTGGTG AGTGATTTAT ATAGTTTGGT TGAGATTTTC
TGCCCTCAAA TGTACTTACA TTATAGATAT AAAAAAGTCT ATCTTTCTTA TCTCAGACAT CAGCTTCTTC TTCATGCCTG
CACTTCAAAC AAATATGGTT GTAAAAATGG GCTTGGACAA CACAATTTCA TTTTGGTTTA GCAGAAAGAA GGCCAATGAA
AGCTATTGTC TTCTGCTTTT GCTACAGACA GCTTCGGCAG TATTTTCTAT CAGTGGTGTT TCAAATTTAT AAAGAAAAAT
GGAATCTTGC TGTTAATTGA ATTGTATCTT GAAATTCA

>Vigan.03G062000.01
GAGGTGGCAT GAAATGACAG TGGAATTTTA ACAAAAAGTC AACAGAAACT GGTGTTATTT TCCTAATTTG GCAGACAGAG
GCACATAAAG TGCTGCAAAA TTCACCTTTG TACAAGAAAC AAGTAAAACT TGTGGGGATA GTTTCACGTT CTCATTTTGT
GGGGCTCTCT CCCAAAATGA TCCCACCCTA ATTTAGCTAG ATCGTAGGCA TATCTCAGCC TTTTAAAACA CAATTCAAAC
TCCCATTTGA GGCTCTAGTG TTGTGAGTCT TCACCCTTTT TTTTACCAAT TCCCTCCACT CCTAAAATCT CTCTAGGAGG
GAAGGGGGGG CAAGGCAATG AAGATGGAGA CACAACCACA TAAGAAACAC CATTTTGGAA CTTCCCACAT GCCCTTTCTA
GTACAGCATT GTTGTCTCAT CATCACCCTC TTAATCTCCA CCCTCTTCAG CATCACCACT GCTTTTGATT ATGCTGATGC
CCTTTCAAAG AGTCTTCTCT ACTTCGAAGC ACAACGCTCT GGTAGAATAC CTTACAATCA GCGTGTCACT TGGAGAGACC
ATTCTGGCCT CACAGATGGT TTGGAAGAAG GGGTGGATTT GGTGGGAGGG TATTATGATG CAGGGGATCA TGTGAAATTT
GGTTTACCAA TGGCATTCAC CATCACAATG CTTTCATGGA GTGCCATAGA GTACAGGCAA CAGATTGAAG AGGCAGGTGA
ATTACAACAC ACATTGGAGG CCATCAAATG GGGCACTGAT TATTTCATCA AAGCTCACAC AAGCCCAAAT GTCCTATGGG
CTGAGGTGGG TGATGGTGAC ACTGACCATT ATTGTTGGCA ACGGCCAGAG GACATGACGA CTTCACGGCG GGCGTTTAAG
ATCGAGGAGA ACAATCCCGG TTCAGATCTG GCCGGAGAGA CTGCAGCAGC TATGGCAGCT GCATCCATTG TGTTCAAAAA
AACAAACGCA CATTACTCTC ACTTGCTTCT GCACCATGCC CTGCAGTTGT TCGAGTTTGG GGACAAGTAT AGGGGAAATT
ATGATGCTAG TGTCGGAGTG GTAAAGAGCT ACTATGCGTC GGTGAGTGGA TACATGGATG AGTTGTTGTG GGCTGCCACG
TGGCTGTACA AAGCCACCGA CAACAAAATG TATTTTGAGT ACGTTCTTTC CAACGCTCAC AAATTTGGTG GCACTGGTTG
GTCCATTTCA GAATTCAGCT GGGATGTTAA GTACGCTGGT CTTCAACTCA TGCTCTCAAA GCTCTTGAGG GAAGAAAAAG
AGAAGAAGCA TAGGACTATA CTTGAACAAT ACAGAACAAA AGCAGAGTAC TACGTATGTT CATGTCTGAA CAAAAATAAC
GACAGCAAGG ATAACGTGGA ACGAACCCCT GGTGGACTGC TCTATATCCG AGAGTGGAAC AACATGCAAT ATGTTTCAAC
AGCAGCATTT CTGCTTTCAA CGTACTCTGA TTATCTTGAG AACACAAATC AAAAGCTGAA TTGCGAAACG GGTACAGTGG
ATCATGAAGA AATTCAGAGT TTTGCTAAAT CACAGGTTGA TTACATTTTG GGGTCCAATC CAATGAACAT GAGCTATTTA
GTAGGGTATG GCCCTAAGTA CCCGAAAAGG GTTCACCACA GAGGGGCATC CATTCTGTCA TACAAAAAGA ATAAAGGGTT
CATAGGGTGT ACTCAAGGGT ATGATAACTG GTATGGTAGC CAAGAACCTA ATCCTAATGT TCTTGTTGGG GCTTTGGTTG
GAGGGCCTGA TGGGAAAGAC AATTTTGAGG ATCGAAGGAA CAATTTTATG CAGACTGAAG CATGCACATA TAATACTGCT
CCCTTGGTTG GTGTTTTTGC AAAGTTCTTG CATATAGAAA ACCACAAAAC AGTTCATGAC TGTAATTCAC TTTTGCTTGC
TTCTTTCAAA TAATATATAC TATACTATTA ATACAGTATA TGTTATCATA AATAAGTCAA AACCCAACTT CTTTTCAATT
ATTTTTTTTC CTCATTGGTG AGTGATTTAT ATAGTTTGGT TGAGATTTTC TGCCCTCAAA TGTACTTACA TTATAGATAT
AAAAAAGTCT ATCTTTCTTA TCTCAGACAT CAGCTTCTTC TTCATGCCTG CACTTCAAAC AAATATGGTT GTAAAAATGG
GCTTGGACAA CACAATTTCA TTTTGGTTTA GCAGAAAGAA GGCCAATGAA AGCTATTGTC TTCTGCTTTT GCTACAGACA
GCTTCGGCAG TATTTTCTAT CAGTGGTGTT TCAAATTTAT AAAGAAAAAT GGAATCTTGC TGTTAATTGA ATTGTATCTT
GAAATTCA

>Vigan.03G062000.01
ATGAAGATGG AGACACAACC ACATAAGAAA CACCATTTTG GAACTTCCCA CATGCCCTTT CTAGTACAGC ATTGTTGTCT
CATCATCACC CTCTTAATCT CCACCCTCTT CAGCATCACC ACTGCTTTTG ATTATGCTGA TGCCCTTTCA AAGAGTCTTC
TCTACTTCGA AGCACAACGC TCTGGTAGAA TACCTTACAA TCAGCGTGTC ACTTGGAGAG ACCATTCTGG CCTCACAGAT
GGTTTGGAAG AAGGGGTGGA TTTGGTGGGA GGGTATTATG ATGCAGGGGA TCATGTGAAA TTTGGTTTAC CAATGGCATT
CACCATCACA ATGCTTTCAT GGAGTGCCAT AGAGTACAGG CAACAGATTG AAGAGGCAGG TGAATTACAA CACACATTGG
AGGCCATCAA ATGGGGCACT GATTATTTCA TCAAAGCTCA CACAAGCCCA AATGTCCTAT GGGCTGAGGT GGGTGATGGT
GACACTGACC ATTATTGTTG GCAACGGCCA GAGGACATGA CGACTTCACG GCGGGCGTTT AAGATCGAGG AGAACAATCC
CGGTTCAGAT CTGGCCGGAG AGACTGCAGC AGCTATGGCA GCTGCATCCA TTGTGTTCAA AAAAACAAAC GCACATTACT
CTCACTTGCT TCTGCACCAT GCCCTGCAGT TGTTCGAGTT TGGGGACAAG TATAGGGGAA ATTATGATGC TAGTGTCGGA
GTGGTAAAGA GCTACTATGC GTCGGTGAGT GGATACATGG ATGAGTTGTT GTGGGCTGCC ACGTGGCTGT ACAAAGCCAC
CGACAACAAA ATGTATTTTG AGTACGTTCT TTCCAACGCT CACAAATTTG GTGGCACTGG TTGGTCCATT TCAGAATTCA
GCTGGGATGT TAAGTACGCT GGTCTTCAAC TCATGCTCTC AAAGCTCTTG AGGGAAGAAA AAGAGAAGAA GCATAGGACT
ATACTTGAAC AATACAGAAC AAAAGCAGAG TACTACGTAT GTTCATGTCT GAACAAAAAT AACGACAGCA AGGATAACGT
GGAACGAACC CCTGGTGGAC TGCTCTATAT CCGAGAGTGG AACAACATGC AATATGTTTC AACAGCAGCA TTTCTGCTTT
CAACGTACTC TGATTATCTT GAGAACACAA ATCAAAAGCT GAATTGCGAA ACGGGTACAG TGGATCATGA AGAAATTCAG
AGTTTTGCTA AATCACAGGT TGATTACATT TTGGGGTCCA ATCCAATGAA CATGAGCTAT TTAGTAGGGT ATGGCCCTAA
GTACCCGAAA AGGGTTCACC ACAGAGGGGC ATCCATTCTG TCATACAAAA AGAATAAAGG GTTCATAGGG TGTACTCAAG
GGTATGATAA CTGGTATGGT AGCCAAGAAC CTAATCCTAA TGTTCTTGTT GGGGCTTTGG TTGGAGGGCC TGATGGGAAA
GACAATTTTG AGGATCGAAG GAACAATTTT ATGCAGACTG AAGCATGCAC ATATAATACT GCTCCCTTGG TTGGTGTTTT
TGCAAAGTTC TTGCATATAG AAAACCACAA AACAGTTCAT GACTGTAATT CACTTTTGCT TGCTTCTTTC AAATAA

>Vigan.03G062000.01
MKMETQPHKK HHFGTSHMPF LVQHCCLIIT LLISTLFSIT TAFDYADALS KSLLYFEAQR SGRIPYNQRV TWRDHSGLTD
GLEEGVDLVG GYYDAGDHVK FGLPMAFTIT MLSWSAIEYR QQIEEAGELQ HTLEAIKWGT DYFIKAHTSP NVLWAEVGDG
DTDHYCWQRP EDMTTSRRAF KIEENNPGSD LAGETAAAMA AASIVFKKTN AHYSHLLLHH ALQLFEFGDK YRGNYDASVG
VVKSYYASVS GYMDELLWAA TWLYKATDNK MYFEYVLSNA HKFGGTGWSI SEFSWDVKYA GLQLMLSKLL REEKEKKHRT
ILEQYRTKAE YYVCSCLNKN NDSKDNVERT PGGLLYIREW NNMQYVSTAA FLLSTYSDYL ENTNQKLNCE TGTVDHEEIQ
SFAKSQVDYI LGSNPMNMSY LVGYGPKYPK RVHHRGASIL SYKKNKGFIG CTQGYDNWYG SQEPNPNVLV GALVGGPDGK
DNFEDRRNNF MQTEACTYNT APLVGVFAKF LHIENHKTVH DCNSLLLASF K*