GBrowse Details

Vigan.03G045100.01

Basic Information:
Name: Vigan.03G045100.01
Multiple alignment
Variant Information
Position: Chr03:4222962..4227949 (+ strand)
Length: 4988
Functional Information:
Description: Similar to polygalacturonase. [XP_003545367.1, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: polygalacturonase activity (GO:0004650)
InterPro: Glycoside hydrolase, family 28 (IPR000743)
Parallel beta-helix repeat (IPR006626)
Pectin lyase fold/virulence factor (IPR011050)
Pectin lyase fold (IPR012334)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,2.45,29.08,9.89,0.62,17.05,6.76,17.59
Arabidopsis thaliana homolog: AT4G23820.1, AT5G41870.1
Automatic updates:
Name: KM399781 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pectin lyase-like superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM399791 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula pectin lyase-like superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM399800 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris pectin lyase-like superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:4222962..4223261 (+ strand)
Length: 300
Type: five_prime_UTR
Position: Chr03:4223262..4223585 (+ strand)
Length: 324
Type: CDS
Position: Chr03:4224466..4224586 (+ strand)
Length: 121
Type: CDS
Position: Chr03:4226232..4226406 (+ strand)
Length: 175
Type: CDS
Position: Chr03:4226508..4226578 (+ strand)
Length: 71
Type: CDS
Position: Chr03:4227104..4227741 (+ strand)
Length: 638
Type: CDS
Position: Chr03:4227742..4227949 (+ strand)
Length: 208
Type: three_prime_UTR

>Vigan.03G045100.01 class=Sequence position=Chr03:4222962..4227949 (+ strand)
CTTCTCCTCA AAAGTTTTGG CAAAAATAAG AAGGGAAAGG TAAAGGGAAA TGCAATAGGA TTTTGAAGGA TTCTGCATCC
AATTTCAATC ACCACACCCA CACGCACATT TACACGAGAG TGAGAGTGCT AGTGATTCTC TGTGTGTGTG AGGACAACAG
AACCAAACAA TTACTTCCAC TTTTAATGTT TTCACCAACC ACCATACGTA CGCACATAGC AGAACCCACT GCCCTTAACT
TCAGACAGAG CCCTTTTAGT TTCACTGGTT CTTCGTTTCT CCGAATCTGA TCCAGCAAAA ATGCGCCTTC GCTTCTTCAC
GTTGCTGTGT TTGTGCTGTT GCTGGTTCGT CTCTAGCGAG GGCGAAACGG TGTCGTGTTC GAACATAGTG TCGTCGGGGT
TCCGCAGCGA CAACATTTCC ATAACTGATT TCGGCGGCGT GGGTGATGGC CACACCCTCA ACACCAAGGC CTTCAGGGAG
GCCATATACA GGATTCAGCG CTTGACACGT GTAGGAGGCA CGCTCCTCTA TGTCCCTCCC GGAGTCTACT TAACGGAACC
CTTCAACCTC ACCAGCCACA TGACGCTCTA CCTCGCCGCC GGTGCCGTTA TTATGGCCAC GCAGGTGCAC TACACTACAC
TACAAAATCA AACCATTTTT ATTTGTTATT TTTGTGTATT AATTTTAATT ATCGATTATT AATTTTCTTA TTCACATTAA
AATTACGATA ACCATATTGT TCACTGTTTA ACTTTTGTCA ATTTGATCTA CAGTTTACAC GAATTATTTT TTTTTTTAAT
TTAGACATTT TAAATTTTGC ATAAACATGA CTGTGTATGC TGCGAAACAA TGTCGGCTAG GTCAAGCGTC TAAGAGGAGA
ATGCCGAAAG AAAATATCAG AAGGGAACGT GAAATGGTAA TACGATGTGA CAATTTAAAA GCATTTCACG TGCATAAAGA
AAAAAAGAAG CGTAAAATAT GAAAAGGGCG TAGTTACGAT GGATTCGTTG TTTATTCGTA TGGTGGGTGG TATGGATCGT
AATGGAAAGT AGGAAACATA CGATCTCCAT GATCATGGTG GGTCCCAGGT TGAGAGGATA GAAACTAGTG AGTGGTCTCG
TCTTCATCAA TGCATGCCAC TATGTGCATC ATCACATTGT AGCTTTAGCA GCTGGAATTT CTGACTATTA CTGTGTCTTC
TTTCCTAATG AATTGGTGGT GGGGTAGAGA CTTGTTCTGC TGCTGCTGCC ACATGCTAGT GTAATTTCTG TGTTTTAATT
AAACATCAAT ATGAGATGGT GATTATTGTA CATGTCTATG CTAATTTCAT CTGTTTTGAA TGCACCATGA TCTAGCTAGA
TACAAAATTA CAGTAAACAA CTTTCATCAT TTCTTCCTTT TCTTACAAAT TGTATTATTT GAGAGAAACA AATGGATCAA
AAGTTTCAGA TGAGCTAGGA CTCAATTTCT AATGACTAAT GCCCTTCATT GCTTGATTCA TTAGGATTCA TCGAATTGGC
CTTTGATTGC ACCCTTGCCT TCTTATGGAA GAGGAAGGGA GCTGCCTGGT GGAAGGTATA TGAGTTTTAT GCATGGAGAT
GGAGTTCAGG ATGTGGTAAT CACTGGTGGG TATCTAACAT GGATAATGAT ACTTTGACAA CATTTTTTTG ACAATATTTT
AACATCATCT ACGTGTCATT CTGTGATTGA TCCAAAATTA TTTCACAATC AATAATAATA ATCATAAACA CTAACATAGA
CCAATCACAG AATGACACGT AGATGATTTT AAAATGTTGT AAAAAAAATA TTGTCAAAAT ATGATTATCC ATCTAACATT
AACTGTTTTT TAGGATACAC TTCAAAATTA GTACTGAATC TGGTTTCATG GTGTGTACTA GACCACATAA TATGTAAACT
ATGATCACAC TATGATAACG CTTACAAAAT ATATATATTT TTTTGTTTAT CTAAATTTTC TTACACCTTT TAAATTAATA
AGAAATAGTA ATTAATATAA TTATAAAGTA ATTATTATAA GAATTAAAAA ATTTATGTTA AGGTTAAAAA AAAACTAACT
ATACTGCATA CTAGAGTTTT GTATGAGAGC TTATAGAACA CACTTGTATT ACTTAATTAA TACTCATCCA TGGATACTAA
TGATCTGTGT AAATATTTAA CTCATCCACT TAACCATTTT TGTTTTAAGT TACACTTCTT TGTATTCTTT GTAAATACAT
GTAAATGTAC AATATCTTTG TAATATATTT CAATTAGAAT TTTAAGAGTA ATTTATTTTT GTAAAATATT TAAAATATTT
TATAATAAAA TATGTTGTTT GGTTAAATTC TGTTAAATAT TAGAATTTTA TAAAATTAAT TTGATTATTT AAAATTATAG
ATTTCAAATT CTACCTAAAG TACGTATCTT CTTAAATTCA TATATTTTTT CTTTATATTC TTTCCTCAAC TTAATCATGG
TAGGAACACT TTCACTAAGA TTGTAATATT TAGGAGGATT ATTTTAATTG ATGTTGACTA ACAATTTTTT CATCTTAATG
ATATGTTAGA ACTTCTTTTA GACATTATTA TCTCATTCAA TATTAGACAG AGATTTATTA TTATTATTAA CCTTGGAGAT
TATTATTTTT ATAGTTGCAT ATATTATTCT TTATAATAGT GATTGAAATT TAACTTTTTA ACAAATACTA ATTAAGATCT
CTTTGTGAAT ACAGGAGAAG ACATTTCTTT TTAGTAACAT CAATCGAACA GTTTGAAAAA AAAAAACAAA TAACAATGTT
GTACAAAATA GTTTTTGTGA ATGTCAATTT AAATAATTGT GATCAAATAT CAACTTAAAA TAATATTGAG TAATATCAAT
TTAAAATAAT TGTGAATGTC AATATAAGTT GAATTTTTTT TATGCAATTT TCTAGAAAAA TAACATCAAT CAAAACCAAC
TAAATAGATA ATCTACATTG ACATTTTTTA ATTATTAAAT GTTATATTAT TTTTACAAAT TGAAATATTT TAGCCATATT
AAAAATTAAT GAACTTAAAT TACTCAAATA AAATATTTAA AAGAAAATAA AAGAATTTAA AATTAGATGA ATTGAAATTT
ATTGTATTTA AATATTTTAA AAATTATAGA TTTTTTATAC AAACTAGCTT ACCTATAATT GAGTGCTGAA AATTTATTTT
ATTAAAACCA GTGGATGTCG TGTCCAAACT ATATTTGTGT CTCTCACGCG GTCATTCATA TTTTTCAAAG GTGAAAATGG
AACAATTGAT GGACAGGGCG ATCTGTGGTG GAATAAGTGG AGGCAGAGAT CTCTTCAGTT TACCAGACCA AACCTTGTTG
AATTTGTAAA TTCTAGAGAC ATTATTATTT CAAATGTAAT CTTCAAGAAT TCTCCTTTCT GGAACATACA CCCGGTTTAC
AGCAGGTATA GGTCTTCGCT CTTTATAAGT TTTTGTTACT TTGTTTCTAG AAACTAAGTG GTTCTCATCC TTAGATCTCA
TTCCTAATTG TCTGACTTCT TTGCAGCAAT ATTGTTGTTC GATTTGTCAC CATTTTGGCG CCACGTGACT CTCCAAATAC
TGATGGCATT GATCCAGGTA AGTAGTGGTT GGTTTCTAGA CAGAAAAATA TTCACAAAAC ATTTAAATAT TCAAATTTTT
GTATGTGTTA CCTTTAAGTT TCGCATGTGA GTTTCTAGTT TTAATTAACA ACAGAGATTA GGAGAGAATG AGTGCTACAG
AGCACACCTT ATGCAAATAG TGAAATTGAT ACAACAAATA GCTTGCACAT ACTGTGCTAG GTTACTAACT GGTCTTATTT
TATTGTTTGT AATCAATATG CATTTTAGTT TTTGGAATTC TTTCCCTTCT AAACACATTT GTCTTGTTTG ATACTGGTGA
CAAGATGCAC TCAAATGTAG TCAGTGTGGC TTGAGATTTG ACAACTATCA TCTCAAGTTT TGTATTTCTG TTTGCTTCCA
TCCAAGTTAA CAACACTACA ATGCAGTAGC AAAAACCCAC GGGTTATCTG GTGGTTGAAA TATTATGGTA CCATTTGGTT
GGTTGGACAA GTAAAAAAAA AAACCATTTC ATATCATTCA TACAAGTATT TCATTGATGC AGATTCAAGT TCAAATGTGT
GCATAGAGGA TTCATACATA TCTACTGGAG ATGATCTTGT GGCTGTGAAG AGTGGATGGG ATGAATACGG GATTGCTTAT
GGCCTTCCTA GCTCTAACAT CACCATCAGG CGTGTAAGTG GATCATCTCC ATTTGCTGGA ATTGCTGTTG GCAGTGAAAC
CTCTGGTGGG GTGGAGAATG TACTTGCTGA GCACATCAAC CTTTACAAAA TGGGAATTGG TATCCACATT AAGACAAACA
GTGGCAGGGG TGGATTCATA AAGAATATAA CCGTGTCTCA TGTGTATATA GAGGAGGCAA GGAAGGGAAT AAGAATCTCA
GGTGATGTTG GGGACCACCC AGATGACAAA TTTGATCCCA ATGCTCTCCC CCTTGTGAAG GGTGTCACAA TTAAGAATGT
TTGGGGTGTG AAGGTTTTGC AGGCTGGCTT GATACAAGGG GTGAAAAATT CACCTTTCAC TGATATTTGC CTTTATGATA
TCAACCTTCG AGGAGTGACA GAACCTAGAA CTCCTCCTTG GAAATGTTCT GATGTGTCTG GATTTGCTCA TCAGGTTAGC
CCTTGGCCAT GTTCTGAGCT TAGCAGCAAC CAGCAAGGAT CATGTGCCAA TTATTCCTGA GATTATAGGA ATATTTTCAC
CTTTGTAGCA TGAGAGCAGC AGCCATTGGC TTCTTTTGCT GATTTATCGC AATGAAAGGC ATTGCAAAAT GAAGACTTGT
TTGTTTAAAT TTTAGTAGAA TTTATTTAGA CTAATAATTT TAAATTGTTA AATGTAATTG AAATGTATGT CGAAGTTAAT
TTCAATAATA AAAATTATGT TTAAACAT

>Vigan.03G045100.01
CTTCTCCTCA AAAGTTTTGG CAAAAATAAG AAGGGAAAGG TAAAGGGAAA TGCAATAGGA TTTTGAAGGA TTCTGCATCC
AATTTCAATC ACCACACCCA CACGCACATT TACACGAGAG TGAGAGTGCT AGTGATTCTC TGTGTGTGTG AGGACAACAG
AACCAAACAA TTACTTCCAC TTTTAATGTT TTCACCAACC ACCATACGTA CGCACATAGC AGAACCCACT GCCCTTAACT
TCAGACAGAG CCCTTTTAGT TTCACTGGTT CTTCGTTTCT CCGAATCTGA TCCAGCAAAA ATGCGCCTTC GCTTCTTCAC
GTTGCTGTGT TTGTGCTGTT GCTGGTTCGT CTCTAGCGAG GGCGAAACGG TGTCGTGTTC GAACATAGTG TCGTCGGGGT
TCCGCAGCGA CAACATTTCC ATAACTGATT TCGGCGGCGT GGGTGATGGC CACACCCTCA ACACCAAGGC CTTCAGGGAG
GCCATATACA GGATTCAGCG CTTGACACGT GTAGGAGGCA CGCTCCTCTA TGTCCCTCCC GGAGTCTACT TAACGGAACC
CTTCAACCTC ACCAGCCACA TGACGCTCTA CCTCGCCGCC GGTGCCGTTA TTATGGCCAC GCAGGATTCA TCGAATTGGC
CTTTGATTGC ACCCTTGCCT TCTTATGGAA GAGGAAGGGA GCTGCCTGGT GGAAGGTATA TGAGTTTTAT GCATGGAGAT
GGAGTTCAGG ATGTGGTAAT CACTGGTGAA AATGGAACAA TTGATGGACA GGGCGATCTG TGGTGGAATA AGTGGAGGCA
GAGATCTCTT CAGTTTACCA GACCAAACCT TGTTGAATTT GTAAATTCTA GAGACATTAT TATTTCAAAT GTAATCTTCA
AGAATTCTCC TTTCTGGAAC ATACACCCGG TTTACAGCAG CAATATTGTT GTTCGATTTG TCACCATTTT GGCGCCACGT
GACTCTCCAA ATACTGATGG CATTGATCCA GATTCAAGTT CAAATGTGTG CATAGAGGAT TCATACATAT CTACTGGAGA
TGATCTTGTG GCTGTGAAGA GTGGATGGGA TGAATACGGG ATTGCTTATG GCCTTCCTAG CTCTAACATC ACCATCAGGC
GTGTAAGTGG ATCATCTCCA TTTGCTGGAA TTGCTGTTGG CAGTGAAACC TCTGGTGGGG TGGAGAATGT ACTTGCTGAG
CACATCAACC TTTACAAAAT GGGAATTGGT ATCCACATTA AGACAAACAG TGGCAGGGGT GGATTCATAA AGAATATAAC
CGTGTCTCAT GTGTATATAG AGGAGGCAAG GAAGGGAATA AGAATCTCAG GTGATGTTGG GGACCACCCA GATGACAAAT
TTGATCCCAA TGCTCTCCCC CTTGTGAAGG GTGTCACAAT TAAGAATGTT TGGGGTGTGA AGGTTTTGCA GGCTGGCTTG
ATACAAGGGG TGAAAAATTC ACCTTTCACT GATATTTGCC TTTATGATAT CAACCTTCGA GGAGTGACAG AACCTAGAAC
TCCTCCTTGG AAATGTTCTG ATGTGTCTGG ATTTGCTCAT CAGGTTAGCC CTTGGCCATG TTCTGAGCTT AGCAGCAACC
AGCAAGGATC ATGTGCCAAT TATTCCTGAG ATTATAGGAA TATTTTCACC TTTGTAGCAT GAGAGCAGCA GCCATTGGCT
TCTTTTGCTG ATTTATCGCA ATGAAAGGCA TTGCAAAATG AAGACTTGTT TGTTTAAATT TTAGTAGAAT TTATTTAGAC
TAATAATTTT AAATTGTTAA ATGTAATTGA AATGTATGTC GAAGTTAATT TCAATAATAA AAATTATGTT TAAACAT

>Vigan.03G045100.01
ATGCGCCTTC GCTTCTTCAC GTTGCTGTGT TTGTGCTGTT GCTGGTTCGT CTCTAGCGAG GGCGAAACGG TGTCGTGTTC
GAACATAGTG TCGTCGGGGT TCCGCAGCGA CAACATTTCC ATAACTGATT TCGGCGGCGT GGGTGATGGC CACACCCTCA
ACACCAAGGC CTTCAGGGAG GCCATATACA GGATTCAGCG CTTGACACGT GTAGGAGGCA CGCTCCTCTA TGTCCCTCCC
GGAGTCTACT TAACGGAACC CTTCAACCTC ACCAGCCACA TGACGCTCTA CCTCGCCGCC GGTGCCGTTA TTATGGCCAC
GCAGGATTCA TCGAATTGGC CTTTGATTGC ACCCTTGCCT TCTTATGGAA GAGGAAGGGA GCTGCCTGGT GGAAGGTATA
TGAGTTTTAT GCATGGAGAT GGAGTTCAGG ATGTGGTAAT CACTGGTGAA AATGGAACAA TTGATGGACA GGGCGATCTG
TGGTGGAATA AGTGGAGGCA GAGATCTCTT CAGTTTACCA GACCAAACCT TGTTGAATTT GTAAATTCTA GAGACATTAT
TATTTCAAAT GTAATCTTCA AGAATTCTCC TTTCTGGAAC ATACACCCGG TTTACAGCAG CAATATTGTT GTTCGATTTG
TCACCATTTT GGCGCCACGT GACTCTCCAA ATACTGATGG CATTGATCCA GATTCAAGTT CAAATGTGTG CATAGAGGAT
TCATACATAT CTACTGGAGA TGATCTTGTG GCTGTGAAGA GTGGATGGGA TGAATACGGG ATTGCTTATG GCCTTCCTAG
CTCTAACATC ACCATCAGGC GTGTAAGTGG ATCATCTCCA TTTGCTGGAA TTGCTGTTGG CAGTGAAACC TCTGGTGGGG
TGGAGAATGT ACTTGCTGAG CACATCAACC TTTACAAAAT GGGAATTGGT ATCCACATTA AGACAAACAG TGGCAGGGGT
GGATTCATAA AGAATATAAC CGTGTCTCAT GTGTATATAG AGGAGGCAAG GAAGGGAATA AGAATCTCAG GTGATGTTGG
GGACCACCCA GATGACAAAT TTGATCCCAA TGCTCTCCCC CTTGTGAAGG GTGTCACAAT TAAGAATGTT TGGGGTGTGA
AGGTTTTGCA GGCTGGCTTG ATACAAGGGG TGAAAAATTC ACCTTTCACT GATATTTGCC TTTATGATAT CAACCTTCGA
GGAGTGACAG AACCTAGAAC TCCTCCTTGG AAATGTTCTG ATGTGTCTGG ATTTGCTCAT CAGGTTAGCC CTTGGCCATG
TTCTGAGCTT AGCAGCAACC AGCAAGGATC ATGTGCCAAT TATTCCTGA

>Vigan.03G045100.01
MRLRFFTLLC LCCCWFVSSE GETVSCSNIV SSGFRSDNIS ITDFGGVGDG HTLNTKAFRE AIYRIQRLTR VGGTLLYVPP
GVYLTEPFNL TSHMTLYLAA GAVIMATQDS SNWPLIAPLP SYGRGRELPG GRYMSFMHGD GVQDVVITGE NGTIDGQGDL
WWNKWRQRSL QFTRPNLVEF VNSRDIIISN VIFKNSPFWN IHPVYSSNIV VRFVTILAPR DSPNTDGIDP DSSSNVCIED
SYISTGDDLV AVKSGWDEYG IAYGLPSSNI TIRRVSGSSP FAGIAVGSET SGGVENVLAE HINLYKMGIG IHIKTNSGRG
GFIKNITVSH VYIEEARKGI RISGDVGDHP DDKFDPNALP LVKGVTIKNV WGVKVLQAGL IQGVKNSPFT DICLYDINLR
GVTEPRTPPW KCSDVSGFAH QVSPWPCSEL SSNQQGSCAN YS*