GBrowse Details

Vigan.03G012300.01

Basic Information:
Name: Vigan.03G012300.01
Multiple alignment
Variant Information
Position: Chr03:906542..910250 (+ strand)
Length: 3709
Functional Information:
Description: Similar to Glucose-1-phosphate adenylyltransferase. [I1JJP2, Glycine max]
GO: Biological Process: glycogen biosynthetic process (GO:0005978)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878)
Molecular Function: nucleotidyltransferase activity (GO:0016779)
InterPro: Nucleotidyl transferase (IPR005835)
ADP-glucose pyrophosphorylase, conserved site (IPR005836)
Trimeric LpxA-like (IPR011004)
Glucose-1-phosphate adenylyltransferase (IPR011831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:290.11,224.72,57.65,573.83,129.98,439.53,46.54,114.75
Arabidopsis thaliana homolog: AT5G48300.1
Automatic updates:
Name: NM_001279184 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic-like (LOC101493964), mRNA.
PubMed ID: 11830133 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:906542..907032 (+ strand)
Length: 491
Type: five_prime_UTR
Position: Chr03:907033..907281 (+ strand)
Length: 249
Type: CDS
Position: Chr03:907546..907842 (+ strand)
Length: 297
Type: CDS
Position: Chr03:907950..908219 (+ strand)
Length: 270
Type: CDS
Position: Chr03:908334..908513 (+ strand)
Length: 180
Type: CDS
Position: Chr03:908611..908714 (+ strand)
Length: 104
Type: CDS
Position: Chr03:908818..908929 (+ strand)
Length: 112
Type: CDS
Position: Chr03:909068..909166 (+ strand)
Length: 99
Type: CDS
Position: Chr03:909314..909433 (+ strand)
Length: 120
Type: CDS
Position: Chr03:909728..909844 (+ strand)
Length: 117
Type: CDS
Position: Chr03:909845..910250 (+ strand)
Length: 406
Type: three_prime_UTR

>Vigan.03G012300.01 class=Sequence position=Chr03:906542..910250 (+ strand)
GTAGAATGTA GTGATTGAAG AAAAGAAAAA ATCATAAGAA ATTGACAACA AAAACTACAA AATAGCGCAG ATTTAGAGAG
AAAGGAGACA AATGCATGGG GATGAGATTT GAAGTGTCTC TCTGTGAGCC AAGTTTCATC CTCAACGGTG CACGTTCAAC
CTGCCAGCCT GTCACTTTCT TCTCCCTCAA ATCAAAAGAA CGGTTCAAAT TCCTCGTTTC TTTTCCTAAA ACTAAAAACC
TCTTCAGTCT CACCTTATAA TTCGTTCTAC TACATTGCAT GTTTATCCTA TGATCTTGTT CTTTTTCCTT ATTTTCTTCA
CAATGACACA TTTTTAATAT TAAATTAAAA AATATCAATC AAATTTGTCA TAATATCTCC TCTTCCATAT AAGGGACTCA
CTCACCTATT CTCAACCACA CACTCTCTCA CTCTCTCTGG TGTTTCTTTC TTTCAACACA CACTCACAAA GAGAGACTCA
CACAGAGAGT GATGGCATCT ATGGCTGCTA TAGGTTCTCT GAATGTACCA TGTGCTGCTT CTGCCTCCTC TTCAAGTGGG
GGAAGGAAAA CCGTTCCACG CAGCCTTTCA TTCTCCGCAT CACAACTTTC TGGAGATAAG ATTTCCACCG ATTCAGTTTC
GGTTGCTCCA AGAAGAGTTC GTAATCCAGT TATTGTGTCT CCCAAGGCGG TTTCTGATTC CCAAAACTCC CAGACCTGTC
TTGATCCCGA TGCTAGCAGA GTAAGTTTAC CTCTTTCTTT ACTACTTAGT TTTTTTTTTT TCTTTCACTG TTACAGCTTG
GAATTAGTGT ATATGTGAAA ATCGACTATC TTGTGTTTGT TTGGGTGACG GGGAGAGAGT GTCTTTTGGA TCAAGTTGAA
AAAATGAATT TTTAGGATCA TGGTAGTTGA TCTTGATCCT TTGGTGGTTG AATTGGATGT GGGTTGGTTC TGATTATGAT
TATGATTGCA AGTAAAAGTG TTTGGCTGAT GATAATGTTT GTAGAGTGTG CTTGGCATTA TACTTGGAGG TGGTGCTGGG
ACTCGTCTTT ACCCACTGAC CAAGAAGAGG GCAAAGCCAG CTGTTCCTCT TGGAGGAAAC TATAGGCTGA TTGATATCCC
TGTTAGCAAT TGCTTGAATA GCAATGTGTC CAAGATCTAT GTTCTCACTC AATTCAATTC TGCGTCCCTG AATCGACACC
TTTCTCGTGC TTATGCAAGC AACATGGGAG GCTACAAAAA TGAGGGTTTT GTTGAGGTTC TTGCTGCTCA GCAGAGTCCT
GAGAATCCTA ATTGGTTCCA GGTAATAACA CTGTCTTAGT GCCTCAACTC TAGTTTTTTG CATTTCCTTT TATGACCTTA
ACTATCCCTT GATTTAATTC TTTAACAAAC TTGATGCGAT CATTGCAGGG TACTGCAGAT GCTGTGAGGC AGTATTTATG
GCTTTTTGAA GAGCACAATG TTTTGGAGTT TTTGGTTCTG GCTGGTGATC ATTTGTATCG AATGGATTAT GAGAAATTTA
TCCAAGCGCA CAGGGAGAGT GATGCTGATA TCACTGTCGC TGCCTTGCCG ATGGATGAAA AGCGTGCCAC TGCATTTGGT
CTGATGAAGA TCGATGAAGA GGGGCGTATA ATTGAATTCG CCGAAAAGCC CAAAGGAGAA CAGTTGAAAG CTATGAAGGT
AAGCCCGTAA AAAATAACAC ACTGTCATGT GTTGTATTTA CCTGGAAATG TTCTGGAAAT CAATGCCAGA ACATTGCTTA
CTAAGGCATC TGACATTTTT TTTCCCTACT AGGTTGATAC TACTATTTTG GGTCTTGATG ACGAGAGAGC AAAGGAAATG
CCTTTCATTG CTAGCATGGG TATATATGTT GTTAGCAAAA ATGTGATGTT AGACCTGCTC CGTGAGAAGT TTCCTGGTGC
AAATGACTTT GGGAGTGAAG TGATTCCTGG TGCAACTTCG ATTGGATTGA GAGTATGTGT TCCTTCCATC TGTTTAATAT
TAAGAAGACT CTTATGCTAT TTTCATGCAT TTATTGATAA TACTGCACGA CATGTTTGTG TATTCACAGG TGCAAGCTTA
CTTGTACGAT GGCTACTGGG AAGACATTGG TACAATTGAG GCTTTCTATA ATGCAAATCT GGGAATCACC AAAAAGCCTG
TGCCTGACTT CAGGTGAACT ATATAGGCCA TTTAATATTG AGAAATGTAT CTCAATGATA GTGTACTGTG GTTATGTTGA
TGTGTTTATG CTTTTTTGTA TATTGATTGC ATGCAGCTTC TATGATCGTT CGTCTCCAAT TTACACCCAA CCACGATATT
TGCCTCCATC TAAGATGCTT GATGCTGATG TCACTGATAG TGTTATCGGT GAAGGATGTG TGATTAAGGT AAGTCTTTTA
GAACCTTCAC ACTATACTTT ATATCTTCCA TGTTTGAGAT TTGTATAATT CTTACAAAGA TGTCAAATAT AACATGACTG
ATTTTTTAAA GAAAAGTAAC CTTGTATTCC ATATTTTGTT CCATAGAACT GCAAAATTCA CCACTCTGTG GTGGGGTTGA
GATCTTGCAT ATCAGAAGGA GCAATTATTG AAGAGACGCT ATTAATGGGG GCAGATTATT ATGAGGTAAT ATAATGTGGT
AAAGTAGCGT TGACACATAC ACATAGTATT TCCAAGTTTA CTAGTGAAGG TTTGACGTAT GAAAGTGCTT GAAACACTTA
TTTATTGTAA GTTTGTAATG GAAAAATTGG TTTTCTGATT GTTGTATACC AGACTGATGC TGATAAGAGG TTTCTGGCTG
CTAAAGGCAG TGTTCCAATC GGTATTGGCA AGAACACTCA TATCAGAAAG GCAATTATCG ACAAGAATGC TCGAATTGGA
GACAATGTGA AGGTGAGGGT AGTAGCTTAG GTGATTTGGA TATTGTTTCT AAATTGAAAA TGAACTTTGG TCTAAATAAC
CTCCAAAATA TAAAAAACAC TGACAAAACT ATAGCTGTTT TATATATTAA CAGTTACAAA TAATTGATTT TGGCCAATAG
TGTATTTATT TATAACCTGT GTGATTCTCT TTTTAATTAA TGATCATGTC AGACTCTTAA TTAAATATGT AATCTGAGTC
ATTAATCTTA ACTGATGATT GTGGTTAAAT ATTCTCATTT CTCACTTTTG GTTCCAATGG ATATAGATTT TAAACGCTGA
CAATATCCAA GAAGCTGCAA GGGAAACAGA TGGGTATTTC ATTAAAAGTG GGATTGTGAC AGTAATCAAG GATGCTTTAA
TTCCTAGTGG AACTGTCATC TAAATCCACC CAAAATCAGA TGTTGTTCTG TTCCAAATGC AAATGGTGTC TGATGAGCTC
GTTGTCACCG CCGGAGAGTT TATCAAGCTC TGCTTTCCAC GCCTAGTGCA GGCTTTCTTT CTGTTTCATC ATAGTGTATC
TTTAGGCAGT AGCTTGTAAA TAATAGCGGA AGATGATGAC GTGTTTTGAG CAATAACTCT GTAAAGTTTA TTTAATCAAT
TCAATAAATG TGTCAGTATT TCGTGCTAAC TACGGGAGAA ACCTCAGACA CCGTGCCCAG ATTGTTACAG ATAAAAAAAA
TAATTAGTTT AATATTAGGT AATTTAGCTT TTAAAAAATA AAAGTTAATT TATGTCTTGT ATATGATCCT AGAAACGCCT
TCTTCAAATA GCCGAATGGC AGTTGATCA

>Vigan.03G012300.01
GTAGAATGTA GTGATTGAAG AAAAGAAAAA ATCATAAGAA ATTGACAACA AAAACTACAA AATAGCGCAG ATTTAGAGAG
AAAGGAGACA AATGCATGGG GATGAGATTT GAAGTGTCTC TCTGTGAGCC AAGTTTCATC CTCAACGGTG CACGTTCAAC
CTGCCAGCCT GTCACTTTCT TCTCCCTCAA ATCAAAAGAA CGGTTCAAAT TCCTCGTTTC TTTTCCTAAA ACTAAAAACC
TCTTCAGTCT CACCTTATAA TTCGTTCTAC TACATTGCAT GTTTATCCTA TGATCTTGTT CTTTTTCCTT ATTTTCTTCA
CAATGACACA TTTTTAATAT TAAATTAAAA AATATCAATC AAATTTGTCA TAATATCTCC TCTTCCATAT AAGGGACTCA
CTCACCTATT CTCAACCACA CACTCTCTCA CTCTCTCTGG TGTTTCTTTC TTTCAACACA CACTCACAAA GAGAGACTCA
CACAGAGAGT GATGGCATCT ATGGCTGCTA TAGGTTCTCT GAATGTACCA TGTGCTGCTT CTGCCTCCTC TTCAAGTGGG
GGAAGGAAAA CCGTTCCACG CAGCCTTTCA TTCTCCGCAT CACAACTTTC TGGAGATAAG ATTTCCACCG ATTCAGTTTC
GGTTGCTCCA AGAAGAGTTC GTAATCCAGT TATTGTGTCT CCCAAGGCGG TTTCTGATTC CCAAAACTCC CAGACCTGTC
TTGATCCCGA TGCTAGCAGA AGTGTGCTTG GCATTATACT TGGAGGTGGT GCTGGGACTC GTCTTTACCC ACTGACCAAG
AAGAGGGCAA AGCCAGCTGT TCCTCTTGGA GGAAACTATA GGCTGATTGA TATCCCTGTT AGCAATTGCT TGAATAGCAA
TGTGTCCAAG ATCTATGTTC TCACTCAATT CAATTCTGCG TCCCTGAATC GACACCTTTC TCGTGCTTAT GCAAGCAACA
TGGGAGGCTA CAAAAATGAG GGTTTTGTTG AGGTTCTTGC TGCTCAGCAG AGTCCTGAGA ATCCTAATTG GTTCCAGGGT
ACTGCAGATG CTGTGAGGCA GTATTTATGG CTTTTTGAAG AGCACAATGT TTTGGAGTTT TTGGTTCTGG CTGGTGATCA
TTTGTATCGA ATGGATTATG AGAAATTTAT CCAAGCGCAC AGGGAGAGTG ATGCTGATAT CACTGTCGCT GCCTTGCCGA
TGGATGAAAA GCGTGCCACT GCATTTGGTC TGATGAAGAT CGATGAAGAG GGGCGTATAA TTGAATTCGC CGAAAAGCCC
AAAGGAGAAC AGTTGAAAGC TATGAAGGTT GATACTACTA TTTTGGGTCT TGATGACGAG AGAGCAAAGG AAATGCCTTT
CATTGCTAGC ATGGGTATAT ATGTTGTTAG CAAAAATGTG ATGTTAGACC TGCTCCGTGA GAAGTTTCCT GGTGCAAATG
ACTTTGGGAG TGAAGTGATT CCTGGTGCAA CTTCGATTGG ATTGAGAGTG CAAGCTTACT TGTACGATGG CTACTGGGAA
GACATTGGTA CAATTGAGGC TTTCTATAAT GCAAATCTGG GAATCACCAA AAAGCCTGTG CCTGACTTCA GCTTCTATGA
TCGTTCGTCT CCAATTTACA CCCAACCACG ATATTTGCCT CCATCTAAGA TGCTTGATGC TGATGTCACT GATAGTGTTA
TCGGTGAAGG ATGTGTGATT AAGAACTGCA AAATTCACCA CTCTGTGGTG GGGTTGAGAT CTTGCATATC AGAAGGAGCA
ATTATTGAAG AGACGCTATT AATGGGGGCA GATTATTATG AGACTGATGC TGATAAGAGG TTTCTGGCTG CTAAAGGCAG
TGTTCCAATC GGTATTGGCA AGAACACTCA TATCAGAAAG GCAATTATCG ACAAGAATGC TCGAATTGGA GACAATGTGA
AGATTTTAAA CGCTGACAAT ATCCAAGAAG CTGCAAGGGA AACAGATGGG TATTTCATTA AAAGTGGGAT TGTGACAGTA
ATCAAGGATG CTTTAATTCC TAGTGGAACT GTCATCTAAA TCCACCCAAA ATCAGATGTT GTTCTGTTCC AAATGCAAAT
GGTGTCTGAT GAGCTCGTTG TCACCGCCGG AGAGTTTATC AAGCTCTGCT TTCCACGCCT AGTGCAGGCT TTCTTTCTGT
TTCATCATAG TGTATCTTTA GGCAGTAGCT TGTAAATAAT AGCGGAAGAT GATGACGTGT TTTGAGCAAT AACTCTGTAA
AGTTTATTTA ATCAATTCAA TAAATGTGTC AGTATTTCGT GCTAACTACG GGAGAAACCT CAGACACCGT GCCCAGATTG
TTACAGATAA AAAAAATAAT TAGTTTAATA TTAGGTAATT TAGCTTTTAA AAAATAAAAG TTAATTTATG TCTTGTATAT
GATCCTAGAA ACGCCTTCTT CAAATAGCCG AATGGCAGTT GATCA

>Vigan.03G012300.01
ATGGCATCTA TGGCTGCTAT AGGTTCTCTG AATGTACCAT GTGCTGCTTC TGCCTCCTCT TCAAGTGGGG GAAGGAAAAC
CGTTCCACGC AGCCTTTCAT TCTCCGCATC ACAACTTTCT GGAGATAAGA TTTCCACCGA TTCAGTTTCG GTTGCTCCAA
GAAGAGTTCG TAATCCAGTT ATTGTGTCTC CCAAGGCGGT TTCTGATTCC CAAAACTCCC AGACCTGTCT TGATCCCGAT
GCTAGCAGAA GTGTGCTTGG CATTATACTT GGAGGTGGTG CTGGGACTCG TCTTTACCCA CTGACCAAGA AGAGGGCAAA
GCCAGCTGTT CCTCTTGGAG GAAACTATAG GCTGATTGAT ATCCCTGTTA GCAATTGCTT GAATAGCAAT GTGTCCAAGA
TCTATGTTCT CACTCAATTC AATTCTGCGT CCCTGAATCG ACACCTTTCT CGTGCTTATG CAAGCAACAT GGGAGGCTAC
AAAAATGAGG GTTTTGTTGA GGTTCTTGCT GCTCAGCAGA GTCCTGAGAA TCCTAATTGG TTCCAGGGTA CTGCAGATGC
TGTGAGGCAG TATTTATGGC TTTTTGAAGA GCACAATGTT TTGGAGTTTT TGGTTCTGGC TGGTGATCAT TTGTATCGAA
TGGATTATGA GAAATTTATC CAAGCGCACA GGGAGAGTGA TGCTGATATC ACTGTCGCTG CCTTGCCGAT GGATGAAAAG
CGTGCCACTG CATTTGGTCT GATGAAGATC GATGAAGAGG GGCGTATAAT TGAATTCGCC GAAAAGCCCA AAGGAGAACA
GTTGAAAGCT ATGAAGGTTG ATACTACTAT TTTGGGTCTT GATGACGAGA GAGCAAAGGA AATGCCTTTC ATTGCTAGCA
TGGGTATATA TGTTGTTAGC AAAAATGTGA TGTTAGACCT GCTCCGTGAG AAGTTTCCTG GTGCAAATGA CTTTGGGAGT
GAAGTGATTC CTGGTGCAAC TTCGATTGGA TTGAGAGTGC AAGCTTACTT GTACGATGGC TACTGGGAAG ACATTGGTAC
AATTGAGGCT TTCTATAATG CAAATCTGGG AATCACCAAA AAGCCTGTGC CTGACTTCAG CTTCTATGAT CGTTCGTCTC
CAATTTACAC CCAACCACGA TATTTGCCTC CATCTAAGAT GCTTGATGCT GATGTCACTG ATAGTGTTAT CGGTGAAGGA
TGTGTGATTA AGAACTGCAA AATTCACCAC TCTGTGGTGG GGTTGAGATC TTGCATATCA GAAGGAGCAA TTATTGAAGA
GACGCTATTA ATGGGGGCAG ATTATTATGA GACTGATGCT GATAAGAGGT TTCTGGCTGC TAAAGGCAGT GTTCCAATCG
GTATTGGCAA GAACACTCAT ATCAGAAAGG CAATTATCGA CAAGAATGCT CGAATTGGAG ACAATGTGAA GATTTTAAAC
GCTGACAATA TCCAAGAAGC TGCAAGGGAA ACAGATGGGT ATTTCATTAA AAGTGGGATT GTGACAGTAA TCAAGGATGC
TTTAATTCCT AGTGGAACTG TCATCTAA

>Vigan.03G012300.01
MASMAAIGSL NVPCAASASS SSGGRKTVPR SLSFSASQLS GDKISTDSVS VAPRRVRNPV IVSPKAVSDS QNSQTCLDPD
ASRSVLGIIL GGGAGTRLYP LTKKRAKPAV PLGGNYRLID IPVSNCLNSN VSKIYVLTQF NSASLNRHLS RAYASNMGGY
KNEGFVEVLA AQQSPENPNW FQGTADAVRQ YLWLFEEHNV LEFLVLAGDH LYRMDYEKFI QAHRESDADI TVAALPMDEK
RATAFGLMKI DEEGRIIEFA EKPKGEQLKA MKVDTTILGL DDERAKEMPF IASMGIYVVS KNVMLDLLRE KFPGANDFGS
EVIPGATSIG LRVQAYLYDG YWEDIGTIEA FYNANLGITK KPVPDFSFYD RSSPIYTQPR YLPPSKMLDA DVTDSVIGEG
CVIKNCKIHH SVVGLRSCIS EGAIIEETLL MGADYYETDA DKRFLAAKGS VPIGIGKNTH IRKAIIDKNA RIGDNVKILN
ADNIQEAARE TDGYFIKSGI VTVIKDALIP SGTVI*