GBrowse Details

Vigan.02G294000.01

Basic Information:
Name: Vigan.02G294000.01
Multiple alignment
Variant Information
Position: Chr02:40790405..40795012 (- strand)
Length: 4608
Functional Information:
Description: Similar to Thioesterase superfamily protein. [XP_007036026.1, Theobroma cacao]
InterPro: Phenylacetic acid degradation-related domain (IPR003736)
Thioesterase superfamily (IPR006683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.45,1.81,3.77,5.46,3.01,7.14,4.56,2.43
Automatic updates:
Name: NM_001401085 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527403 (LOC100527403), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:40790405..40791548 (- strand)
Length: 1144
Type: three_prime_UTR
Position: Chr02:40791549..40791701 (- strand)
Length: 153
Type: CDS
Position: Chr02:40794148..40794339 (- strand)
Length: 192
Type: CDS
Position: Chr02:40794523..40794675 (- strand)
Length: 153
Type: CDS
Position: Chr02:40794676..40795012 (- strand)
Length: 337
Type: five_prime_UTR

>Vigan.02G294000.01 class=Sequence position=Chr02:40790405..40795012 (- strand)
CTACCAATCT TTGAACAGTA AAAGCCATAG CACTTTTGAT TTACAGAAGG CCCATGTCTC GTTCCATTTC AATCAAAACT
GCTCCACCAT GACTCTCACA ATCAACACTT CCTCCATCTT CTGCATGACT TATCCAAACT TTTAAATTTC CACGCACCAA
CCTCTCAATC ATATTGTATA AATGCCCCCA AACTACCCTC TAAACACAAC CAATCATTCT ATAGTCCATT TTGTACAACT
TTCCCATTCT GCAAAGCCTC AACCTCCAAA AAACTTTTCC CATAACACAA TCTGTGAACA GGGAAAGCTC ATAGATTTAC
TCTGATCTAT TTTGTTCATG GAGGATCAGC CATCATCATC ATCATCATCA TCATCAAAAT CAAAAACTGC TGCTTTGGAT
CAACCCCTTC ACTTAATGGG GTTTGAAATT GAAGTATTAT CACCACAAAA AGTCTCTGGC CGGCTCCCTG TAACCCAGAA
GTGCTGCCAG GTCAAGCCAA TTTCATTTTT TCTCTCTCAA TAACAAGCTA TTTTTGTCTG TGTTTGTTTA TCTTTGATTG
GGTTTCTGAA TGTTATGAAA AAGTTACATT TTTCCTGCTT TATGGTTTGG TTTATGCTAA TCATGTTTAT GAGTAGGAGT
TAATTATGAG TAAATTGATT GCGAATGGTG CAGCCATTTA AGGTGCTTCA TGGAGGGGTT TCAGCATTGA TAGCAGAGTC
TTTGGCAAGC ATGGGAGCAC ACATGGCTTC AGGGTATAAA AGAGTGGCTG GAATTCAACT CAGCATCAAC CATTTGAAAC
GAGCTGAGAT GGGTGATTTG GTGCACGCAG AAGCTAAACC TTTAAATGTT GGCAAAACAA TTCAGGTTCT TCCCTTCATC
TTATCTTCTG TTGCTATTTT TGTAAATACC ATAAAACTCA AATTCCTTAT TTTCTCTATT TCTTTTCTCT GTGTGAAGAG
AAGACATATG CGATAAATGG GAAATTACAT AATTATTGTA TCCATTTATT AGTCTACATG CCATGAATGG ACATTTCACC
TACTTTTTTT CTTACTCCTT CCAAAAAGGT TGCCACCAAA AAAATTCAAT AATAGAGAAT TGTATAATTT TATTCTCTCT
TAAATATATA ATTGTTTAAC CCATCTTTAT TTAGAGTGTT TTCTATAATT ATAATATATT AAAGTTGATA AGGAATTTCT
ATTGATCTCT TTAATAATTT TATTTAATCA TATTATTTTA ACTATTAACA CAAAAACTTA GATTTTGCCA AATTCTAGTG
TTTATTTTAA TTTTTCAAAT ATATTTTTTT GCCAGTTTAA TATTTTTATT GTTCTGAGTT TTTTTCTCAC TTATCATTGA
ATCCAATTTT TTATATATTT TTTTTCTTTT GAGAGGATAA GATCACCTCT AATCTTTCCT ATCTGTCTTC CATTTGTTCT
TTCTCACCTA AAACGACACA CCCAATGAGA CCACCTCTGT ACCAAATGCA TTTTTTTGAC ATTTTACATC ATTTACAAGA
GAAGATCCTC TTAATATGTT AATAAGTCAC ATCATTAATT CACACTTTCT TTAGTCACAA GATGGACATT ATGGCATCTT
GGCTCGTTAT TCATCCGGAA AAAATCAATC GAATAAATTA AAATAATTGT TATATTTATA TATTATATTA ATCTATTAAT
TAATTAATAG CTAATATTTA ATTTATAAGT TATTAATAAT ATGAATTATA ATATCTTTTC ATATTTATAT TTTATATTAA
TATAATGTAA AAACTAATTT TTAAATTTTT TTATTTCAAT TTTTAAATTT TTTTTGGGAA AAAGTGAGTC AGAAAATAGA
CAAAAACAAA CTGATAGATT AAAATACCAT ACCCAATGTG TCAATATTGA AAACTATCCA ATCCTAAGTC ACTTCAGATA
GATGGATTTG GGAGTGAATT AATGGTTGTT TTTTAAGTAG ATTTGAAGGT GAGTTAAAAT GGATTTGGAG ATAAAGTTTG
TGAAAATTAA TATAAGAAAA AAATATTATT AAAAAATTGT TTAATTGTTA AAAATTGAAG ATTATCAAAA TATAAGAAAA
AAAATAAAAA ATAGTTTTTA AAATGTAAAA AATGATAATT TAGTAAATTG TAATATATTA TTATTATTAC TATTAATAAT
AATAATAATA ATAATAATAT TATTATTATT ATTATTATTA TTATTATTAT TATTAATATA AAAGACGAGA AACAGCAAAT
AAAAAAAAGA AGAAACACCA AACTGAAACT TTGTTTCACA CCTGAGAGTT ATCAATTCTA GCAAGGGTAG ACATGAGAAT
TTCTTATAAT CCCTGCAAAT CACACCTCAG ATTGAAGAAA ACAATAATCT CACATTCACT CGCCAACACA GACTTTTAAT
TTCAATCCGT CTTCACAAGT TTACGTGAAT AGTAGTTTCT TTAGAAGTGA ATAGACACTT AGAAAAATTC ACCTAAGATT
CTATCCAAAA AAAAAACTCA CTTTTATAAA CTTCTAAATA TTTGTATTTA TATTTTAACA TTTTACAATC TAAAATATTA
AGAATTCATA CTTAAAAACT TATACTTTAT TGTTTAAATG TAATGACTTA TATAAAACTC AATATTTTTA TAACTTAAAA
AATTAAGAAA CTCATTTAAA ATTATATTTG TAGTGTGATA TATTCTAAAT GTATAATAAA ACATATTACG TATAATTTAT
AAACTTAACA ACATTATATG TTATTCAATG TTTTTTAAAA TGGAATATTT TACAGAAAAA TCATTTAAAA CCAAAGCTAA
TGTATACTTA AACATGATGT AAAAGAAATC ATCTGAGTAC TATGTTAGTT ATTAAGATTA TATTAAGACT AAATTAGGTA
TGAGTAGTCA AATTAAAAGT ATTTAACTAT TAAAATAAAA AATAAAGCAA TATAACAATA ATATTAATAA CCATAATAAT
AATAATACAA CATATCTCAA AAATTTAAAT GTTACGTAAA CTAATGCCAG AATTAAAGAC GTGAGCACAA ATAAAATCAC
CAACACACTT CCCACAACAG TTACAAATTT TGAATTGTTG AATCTATATG GCAAACCTCA TCGCAATGAT CCCAGTTGAC
TGGATTGGGA TGAAATGAGA ATAATGTTTT TGTACAAGTT TTTCCATGGT GGTCTAATCT GCTATCTCAG TGATGAGTCA
ATATTTGTTG GCTAGGTATT ATCATGAGAC TCTTCATTTA CTTTGTCGTT GCTAAGGCTT ACAAATATGA GAAATGAGAA
ATGTATGTCA TAGCAGTTTT ATCTGTAACA GGTATGGGAG GTGCTACTAT GGAAGATTGA TCCTTCAGAC TCACAAAGAA
GATCCTTGGT CTCATCTTCT AGAGTAACTC TAGTAACCAA TATGCCTGTC CCAGTTAATG CAAAAGATGC TGCCGATCCA
TTAAAGAAGT TTGCAAAACT GTAAACATAT CCATGACATT GTTTATTAGT GAAATTCAAA ATCTGCTTGA ATACCAAAGG
TCTAAATGTT TACGTATCTA ATGCTTCGAT ATGCACATTT TGATAGACAT AGTACTTCAT GTAAGAAACT ATATCATATA
CCTGAAAAAT GGTTCACATA ACATCCCAGT CTCAAATACG CCAACTTATT TAGTCAATAC CCGTAAATTA CTAATCCTCA
GGATAACAGA GAAACCAGCA GAGAGCTTCT TTCACATTAT TTGCAACATC AGCTTCAAAG TTAAAAGCCC AACATGTCCT
AGAATCATAT ATCAGTATAA ACTTGTAATT TCAATTTTCA ACGGAAACCA TGTGGCTGAA AATGCTGTAC ATCTATCCTG
TGATTCCTAT TCAACCAAAC CAAGCAAGGT CAATTCTAGA AACATACTTT GGAAATGTTA GGATGTTGGG TGCTTCTTGC
TAGAGGATTT TGATCTGACA GTGTTCATGT CCTTTGTTCC CATAGGAACA CCAGCAGTTT TATGCCTAGC ATCAAACATT
AACATAACAT CATCAGAGGT TGACTAACAA CAGCAGCAAA AGCCAGTATT CACCAAAAAG AAGAACAAAA ATTAAGCTAG
AAAAACCTTA ACTGTCTGAG AAGACCAAGT TGTTGGGTTA ATTCATTCAG CTCCAGACTA GAAAGTTTGA GAGAAGATAA
AGTCCCAGGC ACCTCTTCCG AAACAACCTT TGCCAATTTA TTTACTGAAG CTCCTAATCT TCCAAAAGCC TATGCAAGAA
ACAAATATCA ACCCTTTAAA TTTTATCCAT TCAACACATC ACTGCACACA TATGGGTTTC CACTAAAACA AATGACCACA
TATAAGCCGT ATTTAGTGAG AATTCTTCAT GATATAAACT TTTTTATATA GTATAATTTT AGTTCAAACC AGTAACAACT
GTCGGACCAT TCCGCATTCA ACACACCACT ACATACATCT AGGATTAAAA GGAATAATCT ACAAGTTAAA TTTGTTAAAA
ACACTCTTAC AATATAGCTT GTGTAAATTA TAAGAAACAT CCGCAACCGC AATGTCAAGC ATTTCGGGTC TCCTCTAGAA
CATTTTACAT CTGCAACCGT AATTGTCATC AAAACTCAAG GATTTTAG

>Vigan.02G294000.01
CTACCAATCT TTGAACAGTA AAAGCCATAG CACTTTTGAT TTACAGAAGG CCCATGTCTC GTTCCATTTC AATCAAAACT
GCTCCACCAT GACTCTCACA ATCAACACTT CCTCCATCTT CTGCATGACT TATCCAAACT TTTAAATTTC CACGCACCAA
CCTCTCAATC ATATTGTATA AATGCCCCCA AACTACCCTC TAAACACAAC CAATCATTCT ATAGTCCATT TTGTACAACT
TTCCCATTCT GCAAAGCCTC AACCTCCAAA AAACTTTTCC CATAACACAA TCTGTGAACA GGGAAAGCTC ATAGATTTAC
TCTGATCTAT TTTGTTCATG GAGGATCAGC CATCATCATC ATCATCATCA TCATCAAAAT CAAAAACTGC TGCTTTGGAT
CAACCCCTTC ACTTAATGGG GTTTGAAATT GAAGTATTAT CACCACAAAA AGTCTCTGGC CGGCTCCCTG TAACCCAGAA
GTGCTGCCAG CCATTTAAGG TGCTTCATGG AGGGGTTTCA GCATTGATAG CAGAGTCTTT GGCAAGCATG GGAGCACACA
TGGCTTCAGG GTATAAAAGA GTGGCTGGAA TTCAACTCAG CATCAACCAT TTGAAACGAG CTGAGATGGG TGATTTGGTG
CACGCAGAAG CTAAACCTTT AAATGTTGGC AAAACAATTC AGGTATGGGA GGTGCTACTA TGGAAGATTG ATCCTTCAGA
CTCACAAAGA AGATCCTTGG TCTCATCTTC TAGAGTAACT CTAGTAACCA ATATGCCTGT CCCAGTTAAT GCAAAAGATG
CTGCCGATCC ATTAAAGAAG TTTGCAAAAC TGTAAACATA TCCATGACAT TGTTTATTAG TGAAATTCAA AATCTGCTTG
AATACCAAAG GTCTAAATGT TTACGTATCT AATGCTTCGA TATGCACATT TTGATAGACA TAGTACTTCA TGTAAGAAAC
TATATCATAT ACCTGAAAAA TGGTTCACAT AACATCCCAG TCTCAAATAC GCCAACTTAT TTAGTCAATA CCCGTAAATT
ACTAATCCTC AGGATAACAG AGAAACCAGC AGAGAGCTTC TTTCACATTA TTTGCAACAT CAGCTTCAAA GTTAAAAGCC
CAACATGTCC TAGAATCATA TATCAGTATA AACTTGTAAT TTCAATTTTC AACGGAAACC ATGTGGCTGA AAATGCTGTA
CATCTATCCT GTGATTCCTA TTCAACCAAA CCAAGCAAGG TCAATTCTAG AAACATACTT TGGAAATGTT AGGATGTTGG
GTGCTTCTTG CTAGAGGATT TTGATCTGAC AGTGTTCATG TCCTTTGTTC CCATAGGAAC ACCAGCAGTT TTATGCCTAG
CATCAAACAT TAACATAACA TCATCAGAGG TTGACTAACA ACAGCAGCAA AAGCCAGTAT TCACCAAAAA GAAGAACAAA
AATTAAGCTA GAAAAACCTT AACTGTCTGA GAAGACCAAG TTGTTGGGTT AATTCATTCA GCTCCAGACT AGAAAGTTTG
AGAGAAGATA AAGTCCCAGG CACCTCTTCC GAAACAACCT TTGCCAATTT ATTTACTGAA GCTCCTAATC TTCCAAAAGC
CTATGCAAGA AACAAATATC AACCCTTTAA ATTTTATCCA TTCAACACAT CACTGCACAC ATATGGGTTT CCACTAAAAC
AAATGACCAC ATATAAGCCG TATTTAGTGA GAATTCTTCA TGATATAAAC TTTTTTATAT AGTATAATTT TAGTTCAAAC
CAGTAACAAC TGTCGGACCA TTCCGCATTC AACACACCAC TACATACATC TAGGATTAAA AGGAATAATC TACAAGTTAA
ATTTGTTAAA AACACTCTTA CAATATAGCT TGTGTAAATT ATAAGAAACA TCCGCAACCG CAATGTCAAG CATTTCGGGT
CTCCTCTAGA ACATTTTACA TCTGCAACCG TAATTGTCAT CAAAACTCAA GGATTTTAG

>Vigan.02G294000.01
ATGGAGGATC AGCCATCATC ATCATCATCA TCATCATCAA AATCAAAAAC TGCTGCTTTG GATCAACCCC TTCACTTAAT
GGGGTTTGAA ATTGAAGTAT TATCACCACA AAAAGTCTCT GGCCGGCTCC CTGTAACCCA GAAGTGCTGC CAGCCATTTA
AGGTGCTTCA TGGAGGGGTT TCAGCATTGA TAGCAGAGTC TTTGGCAAGC ATGGGAGCAC ACATGGCTTC AGGGTATAAA
AGAGTGGCTG GAATTCAACT CAGCATCAAC CATTTGAAAC GAGCTGAGAT GGGTGATTTG GTGCACGCAG AAGCTAAACC
TTTAAATGTT GGCAAAACAA TTCAGGTATG GGAGGTGCTA CTATGGAAGA TTGATCCTTC AGACTCACAA AGAAGATCCT
TGGTCTCATC TTCTAGAGTA ACTCTAGTAA CCAATATGCC TGTCCCAGTT AATGCAAAAG ATGCTGCCGA TCCATTAAAG
AAGTTTGCAA AACTGTAA

>Vigan.02G294000.01
MEDQPSSSSS SSSKSKTAAL DQPLHLMGFE IEVLSPQKVS GRLPVTQKCC QPFKVLHGGV SALIAESLAS MGAHMASGYK
RVAGIQLSIN HLKRAEMGDL VHAEAKPLNV GKTIQVWEVL LWKIDPSDSQ RRSLVSSSRV TLVTNMPVPV NAKDAADPLK
KFAKL*