GBrowse Details

Vigan.02G236000.01

Basic Information:
Name: Vigan.02G236000.01
Multiple alignment
Variant Information
Position: Chr02:32706254..32708217 (+ strand)
Length: 1964
Functional Information:
Description: Similar to anaphase-promoting complex subunit 15-like isoform X3. [XP_004501878.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.25,13.25,26.26,35.59,43.70,43.37,21.04,21.46
Arabidopsis thaliana homolog: AT5G63135.1
Automatic updates:
Name: NM_001251143 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527060 (LOC100527060), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:32706254..32706298 (+ strand)
Length: 45
Type: five_prime_UTR
Position: Chr02:32706299..32706442 (+ strand)
Length: 144
Type: CDS
Position: Chr02:32707906..32708061 (+ strand)
Length: 156
Type: CDS
Position: Chr02:32708062..32708217 (+ strand)
Length: 156
Type: three_prime_UTR

>Vigan.02G236000.01 class=Sequence position=Chr02:32706254..32708217 (+ strand)
AATGGAATGA AATAGAGACG TTGAAGCGCG AGTGAGGAAG AAAAGATGTT ACAGTTTCCG GCTTACATGA CTCAGTACCC
ACTCTCGACC AGGACTATTC CGACGTCGTT TCTTCTACCC TCTCAGTGGC CCCATCCCCA AAACGAAGAA CTCCTCCTCG
CCATGGAAGA GTCCGATTTC GAAGAAAAGG TCATTTTCTT TTGGCTCTAC CCTCCACCCT TTCTCTTCTG TTACCTCTCT
TCATAACATT CTGTTTCTAA CGCCATATAA ATTCCTTCAA AACGGTATCT TTTCGGTTGT ACTCTGTCAC TTTTGTACAC
ATCTTTGCAC ATTTTTTTTT CTAGGTTTCT AATGTATCTA ATCAAATGAT TCGGAAATTG GGATTACAGA GGCCTGTAGG
GATTTGATCA TATGGTACAT ATCAATTATG ATATGATTAA ATGTTTAGAT TCTTCCTTCC TTGAATTTCT GTCGCACAAT
TTGAACATGA TTAGCTATTG TTGAAGCAGC ATATATGTAA AATGAAACAT TAGAGTGTGA ATGAGTGGTC ATAACTGGGA
ATTCACAAAT GGGAATTATT ACACATGATT TTCTGCAAAT ATGTTAATCT AAACACACAT GTCTGAAATT TATGACAAAT
TTCTCCTCTC TCCTTCCAGA GAGGTATAAT AGGTGGAATA TTTTGTTTCT TAGTTTTGTT CACATGTTTA GGTTGTTAGC
ATCTTTCTCT TAAAATTTCA TATCTTAGGG AAAGACAAAG TCTGGTCATC CTATAATATA AGGATAAAAT CTGCCAACCA
AGTTTGGCCC AAAAAGATGG TTGGATGCCT TACACTTGTT GATCTGACCA TTGTTTGATT CTTGGTTGTG TAAAGCTTTT
TGGAGATAGG CAAAGTCTAG TTTAATGATC ACTATCTCTT GTTAAAGGAA TTAATCTCGC ACTTCAACTT AGGAGATTTC
CTTTGATTAT AGTAAGTACA TGTTGGGCGT TTATAGTTTC ATGGCCCAGA AGTATGATCA CAAAGTAAAA CATGAAAAAC
ATATTGTTTG ATTTTCAATT GAACCTGATT TAAACTCAAT TTAAAGAACA TCTGTTCTAT TACAATTTTG TCCTAACTTA
AGTAACTCAA TTTAATATAG AAGAAAAGGT AGAGATGTTT TTGTAAACTT AGTTTACAAA GTGAATTTTG TCCTAACTTA
AGTTTACAAA CTTTAATCCA AACATAGCTT AAGGGTATGT TTCGAATGAA GTTTGCAACA TGGGTAGTTG TTTTCTCACT
ACATCTATAT GAAACAATAA AAAGTAGCTT CTGCATAATT GAGGCCTGTG GGTTTGACTT TTGCAAAGGA TGTGGCGTGA
AAACGCCATA CCAAACACAC AACAAATAAA TTCTCCTCAA ATATTTGGCC ACATTAGCAT CTAGCTGTTT TCTTGAACTT
AGCTGCATGG CTCTCATGAT TTTGACAAGT AGGTATACTT GTAAAGAAAT CTTCCACATA TACATCATGG CATTTAAAAA
AGGCCTGCAT TATCCATTAT AATAAGGTAG TGTTCACTTA AGAAGATAGT AGGTTACAAG GTGCAATTCA GTGTTACATA
TTGTTCATTG CCTCGTACTC ATGCCTGTCG TTGTCGCCAT GAATCATTGC AGTGCAATGA GATTAGGAAG ATGAACAGCA
ACCTTATTGT GATAGGGAAA ACCACAAATG AAAATGATAA AGAAGATTTT GACAATGAGG CAGATGACGA TGATGCTGAC
AATGTAGAGG AATCTGAGGG TGAAGAATTT GAGCAAGAAA CTGGTTGAGA AAGTTCCACA TCAGTCAGTG GCCAGTTATA
TTCTGTTTGT ATTATTTGGG ACTGCTAGTC CAAATCTTTG TATCGAGTTT TTCTTCTATT CGGTTTTTCG ACTTAGTATT
AACCATTGGC TTTTCATTCA TATAGAACTT TGTATTATAT ATTA

>Vigan.02G236000.01
AATGGAATGA AATAGAGACG TTGAAGCGCG AGTGAGGAAG AAAAGATGTT ACAGTTTCCG GCTTACATGA CTCAGTACCC
ACTCTCGACC AGGACTATTC CGACGTCGTT TCTTCTACCC TCTCAGTGGC CCCATCCCCA AAACGAAGAA CTCCTCCTCG
CCATGGAAGA GTCCGATTTC GAAGAAAAGT GCAATGAGAT TAGGAAGATG AACAGCAACC TTATTGTGAT AGGGAAAACC
ACAAATGAAA ATGATAAAGA AGATTTTGAC AATGAGGCAG ATGACGATGA TGCTGACAAT GTAGAGGAAT CTGAGGGTGA
AGAATTTGAG CAAGAAACTG GTTGAGAAAG TTCCACATCA GTCAGTGGCC AGTTATATTC TGTTTGTATT ATTTGGGACT
GCTAGTCCAA ATCTTTGTAT CGAGTTTTTC TTCTATTCGG TTTTTCGACT TAGTATTAAC CATTGGCTTT TCATTCATAT
AGAACTTTGT ATTATATATT A

>Vigan.02G236000.01
ATGTTACAGT TTCCGGCTTA CATGACTCAG TACCCACTCT CGACCAGGAC TATTCCGACG TCGTTTCTTC TACCCTCTCA
GTGGCCCCAT CCCCAAAACG AAGAACTCCT CCTCGCCATG GAAGAGTCCG ATTTCGAAGA AAAGTGCAAT GAGATTAGGA
AGATGAACAG CAACCTTATT GTGATAGGGA AAACCACAAA TGAAAATGAT AAAGAAGATT TTGACAATGA GGCAGATGAC
GATGATGCTG ACAATGTAGA GGAATCTGAG GGTGAAGAAT TTGAGCAAGA AACTGGTTGA 

>Vigan.02G236000.01
MLQFPAYMTQ YPLSTRTIPT SFLLPSQWPH PQNEELLLAM EESDFEEKCN EIRKMNSNLI VIGKTTNEND KEDFDNEADD
DDADNVEESE GEEFEQETG*