GBrowse Details

Vigan.02G069400.01

Basic Information:
Name: Vigan.02G069400.01
Multiple alignment
Variant Information
Position: Chr02:5250955..5252842 (+ strand)
Length: 1888
Functional Information:
Description: Similar to Constans. [U5TZJ5, Phaseolus vulgaris]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, B-box (IPR000315)
CCT domain (IPR010402)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.64,4.90,51.82,169.51,4.88,78.44,22.51,67.52
Automatic updates:
Name: BT093300 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-17I7 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:5250955..5251332 (+ strand)
Length: 378
Type: five_prime_UTR
Position: Chr02:5251333..5251965 (+ strand)
Length: 633
Type: CDS
Position: Chr02:5252083..5252382 (+ strand)
Length: 300
Type: CDS
Position: Chr02:5252383..5252842 (+ strand)
Length: 460
Type: three_prime_UTR

>Vigan.02G069400.01 class=Sequence position=Chr02:5250955..5252842 (+ strand)
CAGAATTATG GTGAGTGACG ATAATAATTT TATAAAGATG CCAAAAAGCT TTGGATGAAA AGGAAGAGTG GTGGAGGGGG
TTGGAATATG GCACCACAGC GTCCGAACCC AAAACCCTCT TTCTCCTACA GACTCTATTG CAGTCGCTTC CCCACCCCTA
AATTTATTGT AGGGTCTATA TTCGGCTAAG CCTCTCCACG TGCCACTATT TCATTGGTTA TTCTTCAGAT CTCCCGGGGC
CCACCAGATA GACTTGGACA CACTTGACTC GACTACTTTC ACATAATCAC GCTTCCTCAC TTCCACACCA CACCCCATTC
CCAAACAAAA TAAACACAAA ACAGATCACA GAGAGAGACG TAGAGGGAGC CACCACTCAT GGCTTCCAAG CTCTGCGACT
CATGCAAGTC CGCCACCGCC ACCTTGTACT GCCGCCCCGA CGCTGCCTTC CTATGCGGTG CCTGCGATTC CAAGGTCCAC
GCCGCCAACA AGCTCGCCTC GCGCCACCCA CGCGTTGCGC TCTGCGAGGT ATGCGAGCAG GCGCCCGCGC ACGTCACCTG
CAAGGCCGAC GCCGCCGCGC TCTGCCTCGC CTGCGACCGT GACATCCACT CCGCCAACCC CCTCGCCAGC CGCCACGAGC
GTCTCCCTGT CGCGCCCTTC TACGAGTCCG TACACTCCGT CAAGGCCTCC TCGCCTATCA ACTTTCTCGA CGACCACCGC
TTCTTCTCCG ACGCCGACGC TGATGTCAGC ACCGAGGAGG CCGAGGCCGC GTCCTGGTTG CTACCTAATC CTAAAACAGA
TCTAAATTCC TCTCAGTACT TGTTCTCCGA ATCCGAGCCC GTTCCTTACA TAGATCTGGA CTATGCCGTC GCGGATCCGA
AAGCGGATCC GAAAGGCTCC GCTACCGCCG ACGGCGTGGT TCCGGTGCAG AGCAACTACG AGCCGTTCGC CTACGGTTAC
AAATACAATT CCACCACTCT CTCGCAGTCA CAGTCTCAGA TGAGCCAAAG TGTAAGTCTA AGCACTATCT TGCCGTGATG
TTTAGTTGTT TCGAAATCGA TTTGTGGAAT ATGATAACAT GGATTAATTT GTTTGTTTGT TTGTTCTTGT GGTTGTTGAT
TCTTTCAGGT ATCGTCGTCG TCGATGGAGG TTGGAGTTGT GCCGGACGGA AACACGATGT CGGAGATATC GAACTGCAGC
TACAGCAAGG TGGCCGCGGT GACAGTGACG GCTCAGTTTT CGGCGGCGGA CAGGGAGGCA AGAGTGTTGA GGTACCGGGA
GAAAAGGAAG AACCGAAAGT TCGAGAAGAC AATTCGTTAC GCTTCGAGAA AAGCGTATGC AGAAACGAGA CCAAGGATCA
AAGGCAGGTT CGCTAAACGT TCTGATGCGG ACCCTCTGGC TGGATACGGC GTCGTTCCGT CGTGCTGATT TCGCTTTATA
TATCTACTAT GTATGATGCT ACTGCTGCTT ACTTTTTGTC TTCTTATGTT TGTTTTGCTG TGTATATACT ACGATCTTTT
TGTTTGAATT AAGCAATGTA AAGTTGCAAA CAGTTGCTGT GGATCGATTT TGTAGTTTGT TCGTTGTTTT TGGGTGAATT
TTGGGACCTT TTGCTTATGT GAGAAGGTGA AAAAAGAAGC GAAGGAAACG ATGATGGCAA TTGCACTTCC TTTTCGGCTG
ATGCTGCTGT GCAGAGTTTC GCAAATCAAA TTCTGGAAAA CAATTGGTAT TGAACATGTG ATTAAGAGGT TTCTTTAATC
ACAAATTATA TTTTATAGTA TCTTTTAAGT TTATTTCATT CCTTCTCCTC AAAGAGAAAG AACAACTGGC ACCAATCTAC
TTTAAGAAAA TAACTTTACT ACATTAATAG TACCAACTAC TTTCCGAA

>Vigan.02G069400.01
CAGAATTATG GTGAGTGACG ATAATAATTT TATAAAGATG CCAAAAAGCT TTGGATGAAA AGGAAGAGTG GTGGAGGGGG
TTGGAATATG GCACCACAGC GTCCGAACCC AAAACCCTCT TTCTCCTACA GACTCTATTG CAGTCGCTTC CCCACCCCTA
AATTTATTGT AGGGTCTATA TTCGGCTAAG CCTCTCCACG TGCCACTATT TCATTGGTTA TTCTTCAGAT CTCCCGGGGC
CCACCAGATA GACTTGGACA CACTTGACTC GACTACTTTC ACATAATCAC GCTTCCTCAC TTCCACACCA CACCCCATTC
CCAAACAAAA TAAACACAAA ACAGATCACA GAGAGAGACG TAGAGGGAGC CACCACTCAT GGCTTCCAAG CTCTGCGACT
CATGCAAGTC CGCCACCGCC ACCTTGTACT GCCGCCCCGA CGCTGCCTTC CTATGCGGTG CCTGCGATTC CAAGGTCCAC
GCCGCCAACA AGCTCGCCTC GCGCCACCCA CGCGTTGCGC TCTGCGAGGT ATGCGAGCAG GCGCCCGCGC ACGTCACCTG
CAAGGCCGAC GCCGCCGCGC TCTGCCTCGC CTGCGACCGT GACATCCACT CCGCCAACCC CCTCGCCAGC CGCCACGAGC
GTCTCCCTGT CGCGCCCTTC TACGAGTCCG TACACTCCGT CAAGGCCTCC TCGCCTATCA ACTTTCTCGA CGACCACCGC
TTCTTCTCCG ACGCCGACGC TGATGTCAGC ACCGAGGAGG CCGAGGCCGC GTCCTGGTTG CTACCTAATC CTAAAACAGA
TCTAAATTCC TCTCAGTACT TGTTCTCCGA ATCCGAGCCC GTTCCTTACA TAGATCTGGA CTATGCCGTC GCGGATCCGA
AAGCGGATCC GAAAGGCTCC GCTACCGCCG ACGGCGTGGT TCCGGTGCAG AGCAACTACG AGCCGTTCGC CTACGGTTAC
AAATACAATT CCACCACTCT CTCGCAGTCA CAGTCTCAGA TGAGCCAAAG TGTATCGTCG TCGTCGATGG AGGTTGGAGT
TGTGCCGGAC GGAAACACGA TGTCGGAGAT ATCGAACTGC AGCTACAGCA AGGTGGCCGC GGTGACAGTG ACGGCTCAGT
TTTCGGCGGC GGACAGGGAG GCAAGAGTGT TGAGGTACCG GGAGAAAAGG AAGAACCGAA AGTTCGAGAA GACAATTCGT
TACGCTTCGA GAAAAGCGTA TGCAGAAACG AGACCAAGGA TCAAAGGCAG GTTCGCTAAA CGTTCTGATG CGGACCCTCT
GGCTGGATAC GGCGTCGTTC CGTCGTGCTG ATTTCGCTTT ATATATCTAC TATGTATGAT GCTACTGCTG CTTACTTTTT
GTCTTCTTAT GTTTGTTTTG CTGTGTATAT ACTACGATCT TTTTGTTTGA ATTAAGCAAT GTAAAGTTGC AAACAGTTGC
TGTGGATCGA TTTTGTAGTT TGTTCGTTGT TTTTGGGTGA ATTTTGGGAC CTTTTGCTTA TGTGAGAAGG TGAAAAAAGA
AGCGAAGGAA ACGATGATGG CAATTGCACT TCCTTTTCGG CTGATGCTGC TGTGCAGAGT TTCGCAAATC AAATTCTGGA
AAACAATTGG TATTGAACAT GTGATTAAGA GGTTTCTTTA ATCACAAATT ATATTTTATA GTATCTTTTA AGTTTATTTC
ATTCCTTCTC CTCAAAGAGA AAGAACAACT GGCACCAATC TACTTTAAGA AAATAACTTT ACTACATTAA TAGTACCAAC
TACTTTCCGA A

>Vigan.02G069400.01
ATGGCTTCCA AGCTCTGCGA CTCATGCAAG TCCGCCACCG CCACCTTGTA CTGCCGCCCC GACGCTGCCT TCCTATGCGG
TGCCTGCGAT TCCAAGGTCC ACGCCGCCAA CAAGCTCGCC TCGCGCCACC CACGCGTTGC GCTCTGCGAG GTATGCGAGC
AGGCGCCCGC GCACGTCACC TGCAAGGCCG ACGCCGCCGC GCTCTGCCTC GCCTGCGACC GTGACATCCA CTCCGCCAAC
CCCCTCGCCA GCCGCCACGA GCGTCTCCCT GTCGCGCCCT TCTACGAGTC CGTACACTCC GTCAAGGCCT CCTCGCCTAT
CAACTTTCTC GACGACCACC GCTTCTTCTC CGACGCCGAC GCTGATGTCA GCACCGAGGA GGCCGAGGCC GCGTCCTGGT
TGCTACCTAA TCCTAAAACA GATCTAAATT CCTCTCAGTA CTTGTTCTCC GAATCCGAGC CCGTTCCTTA CATAGATCTG
GACTATGCCG TCGCGGATCC GAAAGCGGAT CCGAAAGGCT CCGCTACCGC CGACGGCGTG GTTCCGGTGC AGAGCAACTA
CGAGCCGTTC GCCTACGGTT ACAAATACAA TTCCACCACT CTCTCGCAGT CACAGTCTCA GATGAGCCAA AGTGTATCGT
CGTCGTCGAT GGAGGTTGGA GTTGTGCCGG ACGGAAACAC GATGTCGGAG ATATCGAACT GCAGCTACAG CAAGGTGGCC
GCGGTGACAG TGACGGCTCA GTTTTCGGCG GCGGACAGGG AGGCAAGAGT GTTGAGGTAC CGGGAGAAAA GGAAGAACCG
AAAGTTCGAG AAGACAATTC GTTACGCTTC GAGAAAAGCG TATGCAGAAA CGAGACCAAG GATCAAAGGC AGGTTCGCTA
AACGTTCTGA TGCGGACCCT CTGGCTGGAT ACGGCGTCGT TCCGTCGTGC TGA

>Vigan.02G069400.01
MASKLCDSCK SATATLYCRP DAAFLCGACD SKVHAANKLA SRHPRVALCE VCEQAPAHVT CKADAAALCL ACDRDIHSAN
PLASRHERLP VAPFYESVHS VKASSPINFL DDHRFFSDAD ADVSTEEAEA ASWLLPNPKT DLNSSQYLFS ESEPVPYIDL
DYAVADPKAD PKGSATADGV VPVQSNYEPF AYGYKYNSTT LSQSQSQMSQ SVSSSSMEVG VVPDGNTMSE ISNCSYSKVA
AVTVTAQFSA ADREARVLRY REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRSDADP LAGYGVVPSC *