GBrowse Details

Vigan.02G056400.01

Basic Information:
Name: Vigan.02G056400.01
Multiple alignment
Variant Information
Position: Chr02:4254647..4256389 (- strand)
Length: 1743
Functional Information:
Description: Similar to transcription factor RAX3. [XP_003527745.1, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.20,7.23,0.20,0.00,1.25,0.00,18.15,0.01
Arabidopsis thaliana homolog: AT3G49690.1
Automatic updates:
Name: DQ822965 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB161 (MYB161) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:4254647..4254991 (- strand)
Length: 345
Type: three_prime_UTR
Position: Chr02:4254992..4255748 (- strand)
Length: 757
Type: CDS
Position: Chr02:4255860..4255989 (- strand)
Length: 130
Type: CDS
Position: Chr02:4256089..4256224 (- strand)
Length: 136
Type: CDS
Position: Chr02:4256225..4256389 (- strand)
Length: 165
Type: five_prime_UTR

>Vigan.02G056400.01 class=Sequence position=Chr02:4254647..4256389 (- strand)
GCCACACTCT TATATAAAAT TTGTACGATT GGATGTTCAA TTGGAATCAT GTTTATCCGC TCCTACTTTT ATAATTAAAT
AACTTTCTCT CTCTCAATTA TTCACACCCT AAATAGAACC CTTGTCCCAA TAATCAATGA AAGTTCTCAG AGCAACAACA
TCACCATGGG AAGAGCACCT TGCTGTGACA AAGCAAACGT GAAGAAAGGT CCTTGGTCGC CAGAAGAAGA TGCCAAACTC
AAATCCTACA TCGAACAGCA CGGAACCGGA GGCAACTGGA TCGCTTTGCC ACAGAAGATT GGTATCATAC ACATACTATA
TACTCATATA TATAACCCTA GCTACACTTT TCCATCAACT TCTCTTTCTT TCTTATTATT TCTCTTCATT TCTGAGTCAG
GCCTCAAACG ATGTGGCAAG AGTTGCCGTC TCAGGTGGCT AAACTACCTC CGCCCTAACA TCAAGCACGG TGGCTTCTCT
GAAGAAGAAG ATAACATCAT TTGCAGCCTC TACGTTAGCA TTGGAAGCAG GTAACTACTA TTGTTTCCGA AAGAGGATAC
AATCTTATTT TTCTTAAATA AACATGGGAG TTTCATTTTC CGTTGAATGA TTAATGAATC GTTTTGTGTG ATGTAACGCA
GGTGGTCGGT GATTGCGGCA CAATTGCCAG GAAGAACTGA TAACGACATA AAGAACTACT GGAACACGAG GCTGAAGAAG
AAGCTTTTAG GGAAGCAGCG CAAGGAACTG CAGGCACGTA GCAAAGAAAA CGGTGTCGTT AAGCAGGAGA ACAATTCTTC
ACTCTTGCTT CAGGAAAACA TTGTTCAACA ACAGCCTTGT TGGCCACAGA TTCCGGCGCC GCCACTTTCG CCGTACACAA
GTCAAAATCC AAGTTTCAAC GACCAAGACT CTATTAGAAA ACTTCTAATC AAGCTTGGAG GGAGATTCTC CGATGATTAT
CAACCCATAG GGGTGAATGT TCAGTTTCCA CAGGGTTCTC TCACATCAAC ACAACAAATT CAAGAGGAGC AAGTCCATGT
TAGCTCTTCT GGGTGCATGA ACTCTATTGG CAACAGCCAA GTACAATTTG GTCAGAGTAA TGAGTACTGT TCTGAGTTGG
TGCAAGGAGA AGTGAGTTTC AGTTCCGCAG CTATTGGGGA AATGGTTTCT ACTAATGATT ATTCTCAAAG GTTATTAGGA
GGGTTGGAGT TCTTGTATGG AGAGGAAATG ATTAGCGATA AGATAATGGG TGGTTGTGCA TCTTCATGTT GTGGGCAAAG
TACTAATTGG GACGAGACAA GTTCTTTGAT TTATCCTCCT CTTGTTGCTT CGAGTTTCGA GGGTGTGAGG GAAGAGATGC
CACGAGAAAA TGCTTTTCAA GAGTTGAGCT ACCCATAGCA TCATATCGTG TACATTATTT GTTATTTCTA TTGATGGAAG
TTGGAATTAT ATGTATCAAT TGAAGTTAGC AAAAGGGAAG CTAGTGCTCC CATATAGATA ATAAAATCGG CTAGATCTCA
GACTTTCTCA TGTGCTGATC AATCAGTGGC AGTTCAGTTT ATCTCATTTG TTTGTATTAT TTGGTTGTAA TTTTAAGAGT
CGTTTGAATA TATGCTCTAA CTACATATTT TGCAGTACTG AATGCAATTC TTAAGCTGAC AAACAAAGGA ATCATTTCCT
TTTCAGTTAC TGCGATGGCA GCAGAAGATA AGCATTTTGT CAGAAAAACT TTACTATTAC TGG

>Vigan.02G056400.01
GCCACACTCT TATATAAAAT TTGTACGATT GGATGTTCAA TTGGAATCAT GTTTATCCGC TCCTACTTTT ATAATTAAAT
AACTTTCTCT CTCTCAATTA TTCACACCCT AAATAGAACC CTTGTCCCAA TAATCAATGA AAGTTCTCAG AGCAACAACA
TCACCATGGG AAGAGCACCT TGCTGTGACA AAGCAAACGT GAAGAAAGGT CCTTGGTCGC CAGAAGAAGA TGCCAAACTC
AAATCCTACA TCGAACAGCA CGGAACCGGA GGCAACTGGA TCGCTTTGCC ACAGAAGATT GGCCTCAAAC GATGTGGCAA
GAGTTGCCGT CTCAGGTGGC TAAACTACCT CCGCCCTAAC ATCAAGCACG GTGGCTTCTC TGAAGAAGAA GATAACATCA
TTTGCAGCCT CTACGTTAGC ATTGGAAGCA GGTGGTCGGT GATTGCGGCA CAATTGCCAG GAAGAACTGA TAACGACATA
AAGAACTACT GGAACACGAG GCTGAAGAAG AAGCTTTTAG GGAAGCAGCG CAAGGAACTG CAGGCACGTA GCAAAGAAAA
CGGTGTCGTT AAGCAGGAGA ACAATTCTTC ACTCTTGCTT CAGGAAAACA TTGTTCAACA ACAGCCTTGT TGGCCACAGA
TTCCGGCGCC GCCACTTTCG CCGTACACAA GTCAAAATCC AAGTTTCAAC GACCAAGACT CTATTAGAAA ACTTCTAATC
AAGCTTGGAG GGAGATTCTC CGATGATTAT CAACCCATAG GGGTGAATGT TCAGTTTCCA CAGGGTTCTC TCACATCAAC
ACAACAAATT CAAGAGGAGC AAGTCCATGT TAGCTCTTCT GGGTGCATGA ACTCTATTGG CAACAGCCAA GTACAATTTG
GTCAGAGTAA TGAGTACTGT TCTGAGTTGG TGCAAGGAGA AGTGAGTTTC AGTTCCGCAG CTATTGGGGA AATGGTTTCT
ACTAATGATT ATTCTCAAAG GTTATTAGGA GGGTTGGAGT TCTTGTATGG AGAGGAAATG ATTAGCGATA AGATAATGGG
TGGTTGTGCA TCTTCATGTT GTGGGCAAAG TACTAATTGG GACGAGACAA GTTCTTTGAT TTATCCTCCT CTTGTTGCTT
CGAGTTTCGA GGGTGTGAGG GAAGAGATGC CACGAGAAAA TGCTTTTCAA GAGTTGAGCT ACCCATAGCA TCATATCGTG
TACATTATTT GTTATTTCTA TTGATGGAAG TTGGAATTAT ATGTATCAAT TGAAGTTAGC AAAAGGGAAG CTAGTGCTCC
CATATAGATA ATAAAATCGG CTAGATCTCA GACTTTCTCA TGTGCTGATC AATCAGTGGC AGTTCAGTTT ATCTCATTTG
TTTGTATTAT TTGGTTGTAA TTTTAAGAGT CGTTTGAATA TATGCTCTAA CTACATATTT TGCAGTACTG AATGCAATTC
TTAAGCTGAC AAACAAAGGA ATCATTTCCT TTTCAGTTAC TGCGATGGCA GCAGAAGATA AGCATTTTGT CAGAAAAACT
TTACTATTAC TGG

>Vigan.02G056400.01
ATGGGAAGAG CACCTTGCTG TGACAAAGCA AACGTGAAGA AAGGTCCTTG GTCGCCAGAA GAAGATGCCA AACTCAAATC
CTACATCGAA CAGCACGGAA CCGGAGGCAA CTGGATCGCT TTGCCACAGA AGATTGGCCT CAAACGATGT GGCAAGAGTT
GCCGTCTCAG GTGGCTAAAC TACCTCCGCC CTAACATCAA GCACGGTGGC TTCTCTGAAG AAGAAGATAA CATCATTTGC
AGCCTCTACG TTAGCATTGG AAGCAGGTGG TCGGTGATTG CGGCACAATT GCCAGGAAGA ACTGATAACG ACATAAAGAA
CTACTGGAAC ACGAGGCTGA AGAAGAAGCT TTTAGGGAAG CAGCGCAAGG AACTGCAGGC ACGTAGCAAA GAAAACGGTG
TCGTTAAGCA GGAGAACAAT TCTTCACTCT TGCTTCAGGA AAACATTGTT CAACAACAGC CTTGTTGGCC ACAGATTCCG
GCGCCGCCAC TTTCGCCGTA CACAAGTCAA AATCCAAGTT TCAACGACCA AGACTCTATT AGAAAACTTC TAATCAAGCT
TGGAGGGAGA TTCTCCGATG ATTATCAACC CATAGGGGTG AATGTTCAGT TTCCACAGGG TTCTCTCACA TCAACACAAC
AAATTCAAGA GGAGCAAGTC CATGTTAGCT CTTCTGGGTG CATGAACTCT ATTGGCAACA GCCAAGTACA ATTTGGTCAG
AGTAATGAGT ACTGTTCTGA GTTGGTGCAA GGAGAAGTGA GTTTCAGTTC CGCAGCTATT GGGGAAATGG TTTCTACTAA
TGATTATTCT CAAAGGTTAT TAGGAGGGTT GGAGTTCTTG TATGGAGAGG AAATGATTAG CGATAAGATA ATGGGTGGTT
GTGCATCTTC ATGTTGTGGG CAAAGTACTA ATTGGGACGA GACAAGTTCT TTGATTTATC CTCCTCTTGT TGCTTCGAGT
TTCGAGGGTG TGAGGGAAGA GATGCCACGA GAAAATGCTT TTCAAGAGTT GAGCTACCCA TAG

>Vigan.02G056400.01
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC
SLYVSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK QRKELQARSK ENGVVKQENN SSLLLQENIV QQQPCWPQIP
APPLSPYTSQ NPSFNDQDSI RKLLIKLGGR FSDDYQPIGV NVQFPQGSLT STQQIQEEQV HVSSSGCMNS IGNSQVQFGQ
SNEYCSELVQ GEVSFSSAAI GEMVSTNDYS QRLLGGLEFL YGEEMISDKI MGGCASSCCG QSTNWDETSS LIYPPLVASS
FEGVREEMPR ENAFQELSYP *