GBrowse Details

Vigan.01G496700.01

Basic Information:
Name: Vigan.01G496700.01
Multiple alignment
Variant Information
Position: Chr01:62514574..62519361 (+ strand)
Length: 4788
Functional Information:
Description: Similar to nucleolysin TIAR isoform X1. [XP_006600438.1, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:260.44,151.05,65.45,81.67,69.98,94.84,47.51,75.16
Arabidopsis thaliana homolog: AT1G17370.1, AT1G54080.2, AT3G14100.1
Automatic updates:
Name: BT096955 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-25N2 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:62514574..62514860 (+ strand)
Length: 287
Type: five_prime_UTR
Position: Chr01:62514861..62514941 (+ strand)
Length: 81
Type: CDS
Position: Chr01:62515297..62515358 (+ strand)
Length: 62
Type: CDS
Position: Chr01:62515651..62515753 (+ strand)
Length: 103
Type: CDS
Position: Chr01:62515984..62516060 (+ strand)
Length: 77
Type: CDS
Position: Chr01:62516138..62516199 (+ strand)
Length: 62
Type: CDS
Position: Chr01:62516295..62516382 (+ strand)
Length: 88
Type: CDS
Position: Chr01:62516535..62516610 (+ strand)
Length: 76
Type: CDS
Position: Chr01:62516719..62516749 (+ strand)
Length: 31
Type: CDS
Position: Chr01:62517421..62517540 (+ strand)
Length: 120
Type: CDS
Position: Chr01:62517940..62518025 (+ strand)
Length: 86
Type: CDS
Position: Chr01:62518249..62518422 (+ strand)
Length: 174
Type: CDS
Position: Chr01:62518754..62519029 (+ strand)
Length: 276
Type: CDS
Position: Chr01:62519030..62519361 (+ strand)
Length: 332
Type: three_prime_UTR

>Vigan.01G496700.01 class=Sequence position=Chr01:62514574..62519361 (+ strand)
GTTTTTTAAT TAATATTTTA GAAAGAGGCT TTAAACTTAA GTTTTAAAGG GGAAGTGTGT GTGAGACTAG GTCCCTCCAA
ATCCAGTATT CCATCTTTCT TCGTTTTTCG CTGGTCTCTC TTCTTTCCTT TCCCCTCTCT TTCGAGGGTT TTTCTTTTTC
TTTTCTTTTT TCCCTTTAAT TTTTCCTTTT ATTTTCTTTT TTCTCTTTCT CTTCTTTCTC AGTTTTCCTT CCATTTTCTT
TCAATCCCAT TTCTTCTTCC TCTGCAACCC TAACCCTAGA ATTTAAGATG CAGCAACAGA GGTTAAGACA GCATGCCATG
ATGCAACCCT CTCTCTACCA CCACCCCGCT CTCCTTACTC CTCCTCAGGT TCCACTCTTC CTTTAATTTT CTCATTTTCC
TTTAGTACTT ATTCTTAACA TTTTTCAGCT TAATTCTCCT CAGTATTTAT CGTTTTATAT CCCTGATTAA TGATTGTTCT
TCAATTTCCC ACTAATGATA AACTTGCAGT TTTTTTGCTA GATATATGCA TGTAATTTTT GTGGTGCAAA CTTTTTTTTT
GTCGATTTGG TGTTTGTTTA CTCGTTGAGA CATTTGGTAT TTCTTTGGTT TGTAAATGTT TTTTTTTTTG CTTAGATTAG
TTGAGAGGTG AGTGTATAAT TTTGCTTTTA GGAACTCCTT TTTTCTTTTT TTTTCTTTGT CTTTTTACAT TTTTATTTTG
CAGATAGAGC CTATCTTGAG TGGAAATCTG CCACCTGGCT TTGATTCGAG TACATGCCGC AGTGTGTGAG TGTTAATAGA
CATTTTATTT TTTTTTTAAA TTAATATCTT CAACTGTTTG TTTATTTTGG TTTAGTCATT TTTTCCACTT TAGGTTGCCT
TATGTAACTT GTTGACTTCA TTGCCTCTAA GAGATTATGC CTAGCTTGAA TTTTTTATTT TTTATTTTAA TTTCATCTGT
TGGTCTCTGT TTTCTGTAGT TAGTGAATCC AATTCGTTGT GTCCTCGGAG CTTAATGACT TAAGCTTTTG GTTTGTATGT
TTCATTTATA CATCTAACCA CTTTTGAGGA TATGCAGTTA TGTCGGCAAC ATTCATCCCC AGGTTACAGA ACCACTTCTT
CAAGAGCTTT TTTCGGCTGC AGGTGCCCTT GAAGGATGCA AGCTTATCAG GAAAGAGAAG GTCAGCTTTG TTCTATAATG
TTATCTTTAA ATAGAGGATA AAGTGAAGGA TTGATAGTGT ATGATAGAGT TCATGATTCC CGTTAGCTTC TTGTAGTGCA
TGACGAGTAG TATATTCACC AAAAGGTATT TGGCTAGATG ATAGGCATAT GTTTTTGTAC GTTATCTGCT TTTCTTGTCT
CATTTCAATT TTCAGTGATG ATGATCTCTG CATGATTTTG TCTTCTGCAG TCATCCTATG GTTTTGTGGA CTACTTCGAT
CGCAGTTCTG CTGCATTTGC TATTGTAACT CTCAATGGGA GGAATATGTA TGTGGGATCC TAATTTTGAG TTATGGTGCA
AATGTTATTA ATTTTGTAAT TTAACACAAA CCCTTGGCCT GCAGTTTTGG GCAGCCTATT AAGGTTAACT GGGCTTATGC
TAGCAGCCAG AGAGAGGATA CCTCAGGTTA TGTTCTTGCT GATCATGTAC TCTGAGGTGA TTTTATTGTG CTCTGTTTTG
TGGAAAAGAA AATTGAACTT TTTCTCTTCA TTTGGATTCA GGTCACTTCA ATATTTTTGT TGGTGACCTT AGTCCTGAGG
TCACAGATGC GACTTTGTAT GCTTGCTTCT CTGTATATCC TAGTTGTTCG TAAGTTTTTA TGTACCCTTC TATTTTCCTT
CTCATTGCTT GACTGTTTTG TGGTTTACTA GGGATATTTT TTGAGAAGTG CATTTACGTG AATGTATATG TAAATTCATA
TTTGTAGTAT GATGATGATA ATTTTGGTAT TTTTATTACA GTGATGCAAG GGTAATGTGG GATCAAAAGA CAGGCCGTTC
CAGGGGATTT GGATTTGTTT CTTTTCGGAA TCAGCAGGCA TGAAATCATC TCCTTATTTC TACGTTTCTT ATCTTTCAGC
CTTGGGTGTT TTTGTGTTTT TATTCTAATG TTAGGATGTA TTGGTTCTAC GATTCAATTT TTCAGGATGC TCAAAGTGCT
ATAAATGATT TGACTGGTAA GATCATTTCG TTATGTAAAT GCTAGTTTTT CCTTTTTTAC CTTTCTTCAC ATGATGTATG
GATGAATGTT GCGAAGTGTT GTGTATGGCA ATCAAATCTT TGTTACTATA TTATGTTTTT TCTGTCTTGT TTAATCTAAA
AATTGTTTAA AGCTTGCAAT AACCATATCT CACAGTTCAT TTCTTTTTTA TATATACAAT TACATACTAA TCTAGTATGT
GCATGATTCC TATGATGTAA TAAAAACATG ATATGTGGGG ATCTCATAAC GGGATGTAGT AATGGGGTGT TATGATTTCT
ACCGATCAAA TAACCATTTT TGGTATAAAA TCCTTGAACA TAAATTTCCT TGGGCTATTT GACCCATTAT ATTGCCGTTT
CATCAATTTG TGTTCACCAA TTATTGTTGC TTAATAATTT TGTTCTTGCT CCCCACCATA ATGCCTACAT AAAGCACTTT
TTGGCCCCAC TGGTATTGAA ATTTCTGCAA TGGTGGTGCC ATAGGCTGCA GTGATGTGTT TATATTGCAA GATTTTGGTC
TTCTGTCATT GATAACCTTG TTAATTGCAT TAGACGCGTC AATTGTATTT AAGTTTTTTG TTGTTAACTG TATAAGATTT
GGTGCTTCAA TAGTTTCTTA AGTTCTAATT CCCCCTTTAC TCTTCAGGAA AATGGCTTGG AAGCAGACAG ATTCGTTGTA
ATTGGGCAAC AAAAGGGGCC AGTGCAAGTG ATGAAAAGCA GAGTTCGGAT TCCAAAAGTA TCGTGGAGTT GACTAATGGA
ACATCAGGTG AGTATATAAG TTTACCGAAA TACACTTCCT TTTAGAGTGA CTCCTCATTT ACCCTTTACT TTTTGTGGTT
TGCTGTTCTT TTGGAGTCAA TCGAATTCCA ATGTTTTTAT CATGTAAATA TGAAATCTAT AATATTTTCT GTTGTAAAAA
GTTACCAATT CATTGGTTGA TGTTATTTGA ATTGAAAGTA AATTTTAAAC TCATGAGTTT ATTTCAAATA TTATATTTTT
TCAAGCAGTG GTATACGTGC ATCATGATTG ACCTTTTTTC AAATATATGT ATCTTTTGCA GTTATATTGA TACTTTTCCA
TCTATTGATC ATAATGATGT GATTGTAGAT TGTTTCGGGA ATGATCTATG CTTATGGTTG CGTTTTTATT TATTTATATA
TTGTAGAAGA AGGCCAGGAA ATAACCAATG ATGACCCCCC CGAGAAGAAT CCTCAATATA CCACGGTTTA TGTTGGCAAT
CTTGCTCCGG AGGCAAGGAT ATATTTTTGA GACTTTTTAC CTTTTTGTAT TGCCAATTTT ATAGCTTTGT GCATAGATGG
AAAATGTTTC CGTACTACAT TAATATATAT ATATATGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTATGT
ATAACTTAGT CCTGTAAATT CTGTTTGTTG TAAAATGGCT GTGGTAGCTC TCAATTTTAG GATGTGAAAC TGCAGGTCAC
TTCTGTTGAT CTCCATCACC ATTTTCATTC TCTTGGTGCC GGAACTATTG AAGATGTTAG GGTGCAACGA GACAAAGGTT
TTGGGTTTGT GAGATACAGT ACCCATGCTG AAGCAGCTCT TGCTATACAG ATGGGTAATG CTCGAATTCT CTTTGGCAAA
CCTATAAAGG TATGTTGCTA ATTAGCAGGA TATTTGTATA TTGAATTCTA GTATGTTAGC CGTGTATTAT TAATGGCTTT
TCGTACGGCA AATATTCTTT GTTGGGGGTT CCAATGGAAA AAAGTAGTGT CGGCATAATT GAACTCGTAT TTGATGTCAT
CTGTGATTTT TTATTTATTT TTTTAAATTA TGTAAAAAGC CTACAATTTA TTTATATTTC TCAGAAGTCA GAACAGAATC
CCTTGTTCCC TAAGATTCTC AACCATACAT AATTTGATCT TCGAACTCCT ATCAGAAGGC TCTGGAAATG TATCCACTCA
TGTCAATTGA TATTTTACAG TGTTCATGGG GTAGCAAACC TACTCCTCCA GGAACTGCCT CTACTCCTCT TCCGCCTCCT
ACTTCTGCAA ATGTGCCTGG TTTCTCTCTT GCTAGTCTTG CAGCATATGA ACGCCAAATG GCTTTGAGTA AAATGGGTGG
TGCACACGCC CTTCTGCATC AGCAAGGACA GCATGCCCTA AAACAGGTAG CCATGGGAAT GGGTGCTCCA GGGGCTGGTT
ATGATGCAAG GTTTCAGAAT GTTGCTACCA CCCAGCACCT AATGTACTAT CAGTAAAATG TGTTGTGTAA TCTTCCTGCG
ATAAAAAAGG GAGGGTTAAA ACCGTAAGAA TATTTCTACA ATACCCGTTT ATGTCTTCCT CTTCCTTGTC TGCTTTTCTA
TCTTTAGCCT CCAAAATTTT CTTATGTTCT TATTTATGGT CCGTACAATT TTAATGCTAC CGCTGCGTGC ATGAATGGTG
TGTCTTGTAT TTTCTAATGA CGATCATTCG ATGGTTGTAT TGTTCGTTAA CCTTTGCGGT TTGGGATATT AAACTTTGCG
TAGTTATGTA TTTCTGTCTT TTTAGTATCC TTTCCTCTTT CTGAAGTACC AGAGAATTTA AGACTTGC

>Vigan.01G496700.01
GTTTTTTAAT TAATATTTTA GAAAGAGGCT TTAAACTTAA GTTTTAAAGG GGAAGTGTGT GTGAGACTAG GTCCCTCCAA
ATCCAGTATT CCATCTTTCT TCGTTTTTCG CTGGTCTCTC TTCTTTCCTT TCCCCTCTCT TTCGAGGGTT TTTCTTTTTC
TTTTCTTTTT TCCCTTTAAT TTTTCCTTTT ATTTTCTTTT TTCTCTTTCT CTTCTTTCTC AGTTTTCCTT CCATTTTCTT
TCAATCCCAT TTCTTCTTCC TCTGCAACCC TAACCCTAGA ATTTAAGATG CAGCAACAGA GGTTAAGACA GCATGCCATG
ATGCAACCCT CTCTCTACCA CCACCCCGCT CTCCTTACTC CTCCTCAGAT AGAGCCTATC TTGAGTGGAA ATCTGCCACC
TGGCTTTGAT TCGAGTACAT GCCGCAGTGT TTATGTCGGC AACATTCATC CCCAGGTTAC AGAACCACTT CTTCAAGAGC
TTTTTTCGGC TGCAGGTGCC CTTGAAGGAT GCAAGCTTAT CAGGAAAGAG AAGTCATCCT ATGGTTTTGT GGACTACTTC
GATCGCAGTT CTGCTGCATT TGCTATTGTA ACTCTCAATG GGAGGAATAT TTTTGGGCAG CCTATTAAGG TTAACTGGGC
TTATGCTAGC AGCCAGAGAG AGGATACCTC AGGTCACTTC AATATTTTTG TTGGTGACCT TAGTCCTGAG GTCACAGATG
CGACTTTGTA TGCTTGCTTC TCTGTATATC CTAGTTGTTC TGATGCAAGG GTAATGTGGG ATCAAAAGAC AGGCCGTTCC
AGGGGATTTG GATTTGTTTC TTTTCGGAAT CAGCAGGATG CTCAAAGTGC TATAAATGAT TTGACTGGAA AATGGCTTGG
AAGCAGACAG ATTCGTTGTA ATTGGGCAAC AAAAGGGGCC AGTGCAAGTG ATGAAAAGCA GAGTTCGGAT TCCAAAAGTA
TCGTGGAGTT GACTAATGGA ACATCAGAAG AAGGCCAGGA AATAACCAAT GATGACCCCC CCGAGAAGAA TCCTCAATAT
ACCACGGTTT ATGTTGGCAA TCTTGCTCCG GAGGTCACTT CTGTTGATCT CCATCACCAT TTTCATTCTC TTGGTGCCGG
AACTATTGAA GATGTTAGGG TGCAACGAGA CAAAGGTTTT GGGTTTGTGA GATACAGTAC CCATGCTGAA GCAGCTCTTG
CTATACAGAT GGGTAATGCT CGAATTCTCT TTGGCAAACC TATAAAGTGT TCATGGGGTA GCAAACCTAC TCCTCCAGGA
ACTGCCTCTA CTCCTCTTCC GCCTCCTACT TCTGCAAATG TGCCTGGTTT CTCTCTTGCT AGTCTTGCAG CATATGAACG
CCAAATGGCT TTGAGTAAAA TGGGTGGTGC ACACGCCCTT CTGCATCAGC AAGGACAGCA TGCCCTAAAA CAGGTAGCCA
TGGGAATGGG TGCTCCAGGG GCTGGTTATG ATGCAAGGTT TCAGAATGTT GCTACCACCC AGCACCTAAT GTACTATCAG
TAAAATGTGT TGTGTAATCT TCCTGCGATA AAAAAGGGAG GGTTAAAACC GTAAGAATAT TTCTACAATA CCCGTTTATG
TCTTCCTCTT CCTTGTCTGC TTTTCTATCT TTAGCCTCCA AAATTTTCTT ATGTTCTTAT TTATGGTCCG TACAATTTTA
ATGCTACCGC TGCGTGCATG AATGGTGTGT CTTGTATTTT CTAATGACGA TCATTCGATG GTTGTATTGT TCGTTAACCT
TTGCGGTTTG GGATATTAAA CTTTGCGTAG TTATGTATTT CTGTCTTTTT AGTATCCTTT CCTCTTTCTG AAGTACCAGA
GAATTTAAGA CTTGC

>Vigan.01G496700.01
ATGCAGCAAC AGAGGTTAAG ACAGCATGCC ATGATGCAAC CCTCTCTCTA CCACCACCCC GCTCTCCTTA CTCCTCCTCA
GATAGAGCCT ATCTTGAGTG GAAATCTGCC ACCTGGCTTT GATTCGAGTA CATGCCGCAG TGTTTATGTC GGCAACATTC
ATCCCCAGGT TACAGAACCA CTTCTTCAAG AGCTTTTTTC GGCTGCAGGT GCCCTTGAAG GATGCAAGCT TATCAGGAAA
GAGAAGTCAT CCTATGGTTT TGTGGACTAC TTCGATCGCA GTTCTGCTGC ATTTGCTATT GTAACTCTCA ATGGGAGGAA
TATTTTTGGG CAGCCTATTA AGGTTAACTG GGCTTATGCT AGCAGCCAGA GAGAGGATAC CTCAGGTCAC TTCAATATTT
TTGTTGGTGA CCTTAGTCCT GAGGTCACAG ATGCGACTTT GTATGCTTGC TTCTCTGTAT ATCCTAGTTG TTCTGATGCA
AGGGTAATGT GGGATCAAAA GACAGGCCGT TCCAGGGGAT TTGGATTTGT TTCTTTTCGG AATCAGCAGG ATGCTCAAAG
TGCTATAAAT GATTTGACTG GAAAATGGCT TGGAAGCAGA CAGATTCGTT GTAATTGGGC AACAAAAGGG GCCAGTGCAA
GTGATGAAAA GCAGAGTTCG GATTCCAAAA GTATCGTGGA GTTGACTAAT GGAACATCAG AAGAAGGCCA GGAAATAACC
AATGATGACC CCCCCGAGAA GAATCCTCAA TATACCACGG TTTATGTTGG CAATCTTGCT CCGGAGGTCA CTTCTGTTGA
TCTCCATCAC CATTTTCATT CTCTTGGTGC CGGAACTATT GAAGATGTTA GGGTGCAACG AGACAAAGGT TTTGGGTTTG
TGAGATACAG TACCCATGCT GAAGCAGCTC TTGCTATACA GATGGGTAAT GCTCGAATTC TCTTTGGCAA ACCTATAAAG
TGTTCATGGG GTAGCAAACC TACTCCTCCA GGAACTGCCT CTACTCCTCT TCCGCCTCCT ACTTCTGCAA ATGTGCCTGG
TTTCTCTCTT GCTAGTCTTG CAGCATATGA ACGCCAAATG GCTTTGAGTA AAATGGGTGG TGCACACGCC CTTCTGCATC
AGCAAGGACA GCATGCCCTA AAACAGGTAG CCATGGGAAT GGGTGCTCCA GGGGCTGGTT ATGATGCAAG GTTTCAGAAT
GTTGCTACCA CCCAGCACCT AATGTACTAT CAGTAA

>Vigan.01G496700.01
MQQQRLRQHA MMQPSLYHHP ALLTPPQIEP ILSGNLPPGF DSSTCRSVYV GNIHPQVTEP LLQELFSAAG ALEGCKLIRK
EKSSYGFVDY FDRSSAAFAI VTLNGRNIFG QPIKVNWAYA SSQREDTSGH FNIFVGDLSP EVTDATLYAC FSVYPSCSDA
RVMWDQKTGR SRGFGFVSFR NQQDAQSAIN DLTGKWLGSR QIRCNWATKG ASASDEKQSS DSKSIVELTN GTSEEGQEIT
NDDPPEKNPQ YTTVYVGNLA PEVTSVDLHH HFHSLGAGTI EDVRVQRDKG FGFVRYSTHA EAALAIQMGN ARILFGKPIK
CSWGSKPTPP GTASTPLPPP TSANVPGFSL ASLAAYERQM ALSKMGGAHA LLHQQGQHAL KQVAMGMGAP GAGYDARFQN
VATTQHLMYY Q*