GBrowse Details

Vigan.01G391400.01

Basic Information:
Name: Vigan.01G391400.01
Multiple alignment
Variant Information
Position: Chr01:53103548..53107916 (- strand)
Length: 4369
Functional Information:
Description: Similar to DNA binding protein, putative. [B9RAH0, Ricinus communis]
GO: Molecular Function: nucleic acid binding (GO:0003676)
InterPro: SAP domain (IPR003034)
Ubiquitin ligase, Det1/DDB1-complexing (IPR018276)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.28,31.06,6.56,8.11,11.37,12.36,8.74,7.95
Arabidopsis thaliana homolog: AT5G63460.4
Automatic updates:
Name: NM_001248054 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306690 (LOC100306690), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:53103548..53104262 (- strand)
Length: 715
Type: three_prime_UTR
Position: Chr01:53104263..53104501 (- strand)
Length: 239
Type: CDS
Position: Chr01:53105765..53105832 (- strand)
Length: 68
Type: CDS
Position: Chr01:53106033..53106144 (- strand)
Length: 112
Type: CDS
Position: Chr01:53106709..53106754 (- strand)
Length: 46
Type: CDS
Position: Chr01:53107684..53107788 (- strand)
Length: 105
Type: CDS
Position: Chr01:53107789..53107916 (- strand)
Length: 128
Type: five_prime_UTR

>Vigan.01G391400.01 class=Sequence position=Chr01:53103548..53107916 (- strand)
GAGAAAGTTA CGGTATGTTT GGTGTCGTGG CTTAAGTTTT ATAGTGTGTT AGTGTGACAC TGCGAAGAGC ACACGAGAGG
CCAAGTCCTC TCCTTTTCAC TGCGGTTGCG AAACCTCACT TCCATTCCAT GGTAATGGAT GCACCCAATC CTTCTTCCTC
CGCCGCCTCC TCCTTCCTCG CCAATCTCCC CTCTCGAGGC CACTTCTCTT CCACCGTCGT TTCGTCCAAT CCGGTACTTC
AATTCCCCTT TTTCTCTTCT CATTCTTTAT TTTTTTCGAT TTCGGATTTC GGACCTACCT ACATTCACTG CGATGATTTC
GATCCGTGTG CTTTCAGAAC GTTCTCTCTG CTTTTCGTAG AAGCGCTGGT GAAACTAAGC GATTTGTTAT TTAGGTTTTT
GTGTGAAATC ATGTTTATTG TATTGCATAA ACTTTTTTTC CCTGTCTCTA GTTTATGGAA TTTCAAGGTT TTTAGCGGGG
AAAAAGTTCT AGGAGATATT TATTCAACTT AGGTTTGTTT GAAGGGGTTG TTATGGAGTT TTAATCCAAG CTTGCTGATG
TTAAAATTTG TGGTGTTAAA ACTTGGATGA TTTAATATGG ACTGGATATC AACTAGTTCA CCGCTAATAG AATAGAAGTT
TCATATTGTA TGGTTTAAGG GATTTTGTTT TCGTGGATGA TCATGCATTT GTACTATGCT GGCTTCTTTG TTGTGTAAGT
AGGCAATGTA TTGAATAAAC TTCTTCATAG AGGCTTGTAG GAGAAGACAA TGAGAAGGAG AAAATGGATA TAGTTTTTTG
CATAGAGCAA CTTATGCACG TTAGTTTTTT GAGAAGTTAG AGAAGAGAGT TCATAAGTTG ATTTTGGCCC GTGAGAGAAA
CTCAATTCAC TTTCTCTTCA CTCACGGGTG CTTTTAGAGA AATTTATCTA AACAGGGTCA TAGGACATTA TAGTTATTAG
CTAGTGATTC TGTAACCCTA CCTTCGTTGA TGCACATGTT TCTTTATGTT GAGTTGTAAA TGTCATGGTG AATTTTTTTT
GTTCATTTTC TCATGGAAAA TTACATCCCT CCAATTGGTG GAACTTAGGA GACCTCCTGC TTTTAATTGT TATTTGTTAT
ACGAGAGACA TTATGTTTTA ATTTGATATT CTGATCGTGC AGGGGGGGAT GCGGGCCTAT ATATGCGATC ATGATACATC
GCCACCAGGT CTTGTTCTTT ACCTTGTTTC AACTTGTAAC ACATATTGTT ACGGCTTCAA ATTTTTTTAT GTTGGCCTGC
TGCCAAGCAG TAACCTCAGA GAAGAAACAA ACAGAAATGT TTCATCGGTG TATAAACTTT CTCTTCCTTA TAAACACCTC
TAAGCCACAA GTTTCCTTGT CATTACCAGT TGTAAGATCA GTTATTTTTC ATCCGCATGG GAAATTTTAC TCTGCCAGAT
TCAAATACTG TTTGTTTACA CATAATTTAA TGTTAGAGGC ATGTCCATTG ATCGAAACTT TATCATGAAA TAGTATATAT
GTGAACATGT GAGTTCATTA TGTAGTTTGG CTTCTTAGCG CTAACTGTTT TTATCGTCAC TTATCTTTGT TTCGGTAGTC
TTAATTTAGA GAATTCTTAC TCGTAAAATT TACCTCTAAA AAATTTCTGA CCATCCTGTT GGTCATAATG CTATGATATA
TACTCTTCCT ATCGATATTA GCTTTGTCCT TTTAACTTTC TAAATAGATA ATAATTGTAA AATAGGCATT TTTTATTCCC
TTGGTTATGC AGAAGGTCAA CATATTAAGA CAAACCAACA AAACATACTG ATTAGATCAC TCACCCTCAA GAAACAAAGG
GGCGATTCCA GCTCAAAGGA TGGATCTGAT GGTTCCAGAA AGAGGTATTA TTCCCACCTT TTGTGGAAGA GTGATATTTC
AAGTGTACAT TATGGTCAAT GTACAAATTC CCAATCAATT TTTTCTCTCT TACAGCTTGG TAACTTGTGA AAAAGTTATG
GCATCTATCC CTCATTATCT GGTGCCTATC TTTTTATCTT GGTCTTTATT TATTGAATAC TATCTAATCA AACCTTTTTG
TCAGGAATGC TGAAAAGGTT TTGGAAAGAT CTTCAGCCAA GAAAACAAAT AATCAAATAA ATTCCCGACA AGGTGGGTTC
ATGTGGTTGT TATCATAAGT TAGCATTGGG TGAAATCTGA AATATATTTG AAGATTTTTG TCATAAATTA ATTACCTCCA
TATAATGAGT TTGCTCCGGA CAAAAATGTT ATCCTTTTCT TGATATTACT AGTTCAAAAT CAAAATTCTC ATTTAGGTCC
AACATTACTC ATGTCTTAAT TATACTTTTT GAAGACATGT CTCTGATACA TGTTCAGACG TGCATGTCAA CCTCTTTTTA
AATAACTCGA TAAACATTTT CTCTAATTTT TTAGTAAATA TGGACTGGAT AGACATAACC TTCATGTTTG GTAATTTATA
CTGAGTTCTA TAAGGTAGGT ATTTCTTAGT GTTATTTAAG AAAGTGCTGT AGAACACAGG AAGGTGAGTG TGTTTCGAAA
TGTATATGAT ATGAGAACTT TTAAGTTCCA TGTCCTCAAA GTGCACATTG CGTCCCAACT CTAGGAGTAT TTTGACTGAT
ATGAACCAAA TTATGGCTGG TATGGTGTAT TAAGCTGGGT TCCTAAAAGG AATTTTAACC GGCAGTAGTT TAGGACAAAC
CTAAAACAGA ACCGTGGTTG GTCGTTGGTG CTGTATATGT CCTTGTAAAT TCAATTTTTT TCTTTGAAAA GACGTCAGTT
CCTTAACCTT GTTTTTGAAG AGTATAGAAG TCAGATATCT GCTTGCTGAT TTATGCTTTG ATCTTAACCT TTCAGATATA
CATATATGTT AGTTTTTCTA TGTAGTGATT TCCTTTAATA CATGTTTTGC ATGTAATGAT GCTTGTTTTT GCTGTAGAAT
TTCAAAGTGG GGTTTTAATG TTTTATTAAT TCGTATAATC GAAAGTCACT AGTGTGGTCT CCTGAGAAGC AAGAGAATTT
GCTTTGCATT CTAAACCTTT AAGAGGTCGA TGGAACTTAT AGCTTGCTTT TGAATGACAT GATTTTTCAC GACTTTGATT
TGGTGAGAGT GTTGGAGGTT CAATGCTCTA GCAGGACTAC CTATCCTCTT CCCTTTCACC ATGAATATAT CCACCAGTGA
CAGAGAGACT AATAAAGAAT AATGGTAAAC AAGATAGGTT GAGTTGCCTC CTGAGCTGTT CTCTGATTAT TTTGAACTTA
TGAGGAAAGG ATTTCAGCTG AGGTCATATG TTCAATCCAT AGCAATGGTT CCTAATTGAA AGAGACTTAC TTAGCAGGCT
TGATCTTTTG TCCTCTATAT TTCAATTTGT CTTATTATGG GTTTTAATCA TACAGAGGGA TCAAACAGTC AAACAGCCAC
TAGGGACTTG CACAACCTGA CGGTAGAGAG ACTTCGTGCT CTTTTGAAAG CTAAAGGTCT TTCAACCAAG GGAAAGAAGG
CAAGTTTCCA GTCTTCCTAC AGTTTTAACA TACATGCATT TGGAAGATAT CGCTCATTAA TTTGCTTGAT AGTATTTTGT
TTACTCCATA CGTCACAGTG TAGTGGTTGT CAACTGGTAT ATTATTGTCC ATGATTGATT GTTGTCAAGG TGCTCGCTTA
CCTTCTCTCC TTACCTAATA AACGAAATAA AATCTACAGG AGGAGCTTAT TACTCGTCTA AAAGACGCAA CTGGTTAAAG
CATAGCGTGG TGGTAGGAAT ACCCTGTTCA TTAAGCATCC AATGTAAGAG TAGTTAGTGT TTAATGTAAC TTAGGATCTG
GAACTAATAT ATATATATAT ATATATATAC ATACCCAGTG CAAATTACAG TTACAGATGA ATATTATCGT TTTGGAGCTA
TTACCGTTTC GCGACTATCA AGTATGTTTC TTGGGGCATG ATTTGTAGGG GTCAACTACA GAATTGGACA GTCAATGGTG
GTTTTCAAGT TTTAATTACG ATCTGCGGTT GCATCCTTGT CTTTTGCATA TCAACTCTTG TTAAGTTAGA CATGTAACGG
TTACCAATAA CATGTGGAAT ATCTTGTATT GTTAACCATT GCATTGAGAT TTTTTAAATA ATCAAGTAGT CAATTCCAAC
ATCTATTTGG CTTTTACCTT TTCAACGCAT TCACCCTTTC AAACCGTTGA GCTGCGGCCG ACAGTGCTGG AAATAGACTC
ATGCAGGGCT TTCACGGTTC CGTTCGATGG ACACAAGCAT AATATCACCA CCATATGAGA TGACCACTAT CCTTTTCATT
TTATACTCTT ACGTTTAGAT AATATTATTA TCACATTTAT CATATTTTG

>Vigan.01G391400.01
GAGAAAGTTA CGGTATGTTT GGTGTCGTGG CTTAAGTTTT ATAGTGTGTT AGTGTGACAC TGCGAAGAGC ACACGAGAGG
CCAAGTCCTC TCCTTTTCAC TGCGGTTGCG AAACCTCACT TCCATTCCAT GGTAATGGAT GCACCCAATC CTTCTTCCTC
CGCCGCCTCC TCCTTCCTCG CCAATCTCCC CTCTCGAGGC CACTTCTCTT CCACCGTCGT TTCGTCCAAT CCGGGGGGGA
TGCGGGCCTA TATATGCGAT CATGATACAT CGCCACCAGA AGGTCAACAT ATTAAGACAA ACCAACAAAA CATACTGATT
AGATCACTCA CCCTCAAGAA ACAAAGGGGC GATTCCAGCT CAAAGGATGG ATCTGATGGT TCCAGAAAGA GGAATGCTGA
AAAGGTTTTG GAAAGATCTT CAGCCAAGAA AACAAATAAT CAAATAAATT CCCGACAAGA GGGATCAAAC AGTCAAACAG
CCACTAGGGA CTTGCACAAC CTGACGGTAG AGAGACTTCG TGCTCTTTTG AAAGCTAAAG GTCTTTCAAC CAAGGGAAAG
AAGGCAAGTT TCCAGTCTTC CTACAGTTTT AACATACATG CATTTGGAAG ATATCGCTCA TTAATTTGCT TGATAGTATT
TTGTTTACTC CATACGTCAC AGTGTAGTGG TTGTCAACTG GTATATTATT GTCCATGATT GATTGTTGTC AAGGTGCTCG
CTTACCTTCT CTCCTTACCT AATAAACGAA ATAAAATCTA CAGGAGGAGC TTATTACTCG TCTAAAAGAC GCAACTGGTT
AAAGCATAGC GTGGTGGTAG GAATACCCTG TTCATTAAGC ATCCAATGTA AGAGTAGTTA GTGTTTAATG TAACTTAGGA
TCTGGAACTA ATATATATAT ATATATATAT ATACATACCC AGTGCAAATT ACAGTTACAG ATGAATATTA TCGTTTTGGA
GCTATTACCG TTTCGCGACT ATCAAGTATG TTTCTTGGGG CATGATTTGT AGGGGTCAAC TACAGAATTG GACAGTCAAT
GGTGGTTTTC AAGTTTTAAT TACGATCTGC GGTTGCATCC TTGTCTTTTG CATATCAACT CTTGTTAAGT TAGACATGTA
ACGGTTACCA ATAACATGTG GAATATCTTG TATTGTTAAC CATTGCATTG AGATTTTTTA AATAATCAAG TAGTCAATTC
CAACATCTAT TTGGCTTTTA CCTTTTCAAC GCATTCACCC TTTCAAACCG TTGAGCTGCG GCCGACAGTG CTGGAAATAG
ACTCATGCAG GGCTTTCACG GTTCCGTTCG ATGGACACAA GCATAATATC ACCACCATAT GAGATGACCA CTATCCTTTT
CATTTTATAC TCTTACGTTT AGATAATATT ATTATCACAT TTATCATATT TTG

>Vigan.01G391400.01
ATGGTAATGG ATGCACCCAA TCCTTCTTCC TCCGCCGCCT CCTCCTTCCT CGCCAATCTC CCCTCTCGAG GCCACTTCTC
TTCCACCGTC GTTTCGTCCA ATCCGGGGGG GATGCGGGCC TATATATGCG ATCATGATAC ATCGCCACCA GAAGGTCAAC
ATATTAAGAC AAACCAACAA AACATACTGA TTAGATCACT CACCCTCAAG AAACAAAGGG GCGATTCCAG CTCAAAGGAT
GGATCTGATG GTTCCAGAAA GAGGAATGCT GAAAAGGTTT TGGAAAGATC TTCAGCCAAG AAAACAAATA ATCAAATAAA
TTCCCGACAA GAGGGATCAA ACAGTCAAAC AGCCACTAGG GACTTGCACA ACCTGACGGT AGAGAGACTT CGTGCTCTTT
TGAAAGCTAA AGGTCTTTCA ACCAAGGGAA AGAAGGCAAG TTTCCAGTCT TCCTACAGTT TTAACATACA TGCATTTGGA
AGATATCGCT CATTAATTTG CTTGATAGTA TTTTGTTTAC TCCATACGTC ACAGTGTAGT GGTTGTCAAC TGGTATATTA
TTGTCCATGA 

>Vigan.01G391400.01
MVMDAPNPSS SAASSFLANL PSRGHFSSTV VSSNPGGMRA YICDHDTSPP EGQHIKTNQQ NILIRSLTLK KQRGDSSSKD
GSDGSRKRNA EKVLERSSAK KTNNQINSRQ EGSNSQTATR DLHNLTVERL RALLKAKGLS TKGKKASFQS SYSFNIHAFG
RYRSLICLIV FCLLHTSQCS GCQLVYYCP*