GBrowse Details

Vigan.01G353800.01

Basic Information:
Name: Vigan.01G353800.01
Multiple alignment
Variant Information
Position: Chr01:48853747..48856746 (+ strand)
Length: 3000
Functional Information:
Description: Similar to Auxin-responsive GH3 product. [Q05680, Glycine max]
InterPro: GH3 auxin-responsive promoter (IPR004993)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,3.51,3.34,0.30,14.77,6.31,0.61,1.15
Arabidopsis thaliana homolog: AT1G23160.1, AT1G28130.1, AT1G59500.1, AT2G14960.1, AT2G23170.1, AT2G47750.1, AT4G27260.1, AT4G37390.1, AT5G13320.1, AT5G13360.3, AT5G13370.1, AT5G13380.1, AT5G54510.1
Automatic updates:
Name: NM_001358219 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin-responsive protein GH3 (GH3), mRNA.
PubMed ID: 8038604 NCBI(pubmed)
1884011 NCBI(pubmed)
1840920 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:48853747..48854293 (+ strand)
Length: 547
Type: five_prime_UTR
Position: Chr01:48854294..48854622 (+ strand)
Length: 329
Type: CDS
Position: Chr01:48854853..48854954 (+ strand)
Length: 102
Type: CDS
Position: Chr01:48855040..48856429 (+ strand)
Length: 1390
Type: CDS
Position: Chr01:48856430..48856746 (+ strand)
Length: 317
Type: three_prime_UTR

>Vigan.01G353800.01 class=Sequence position=Chr01:48853747..48856746 (+ strand)
AGGATACAGT TAGAGGGCAA AAATAGGGAG TGATAAGTTG CAAAATGGTG GAGCCAAGTT TTCTCCTAAG TAAGTAAAAA
CTTCTCACAG TCCCTGGCGC AGCCGGCAGC CATCACTTTC TGATACCAAC ACACCCTACA ACCCCATGGC CGCATGGTTC
GCCCCTAAGG ACAACACTCA CGAAACTTTT GCTGATGTGG CGACATATGT GGACCCACAT GTCGGCCACA ATGCTTCATA
CCTGGCCCAC CTGTCTCCTC AATAAGCTAC ACTATCTGAA ACACACAATC CTTTGTCGCG CGGATCCCCA TTAACTCCTA
CAACGTCATT CCAAGCGCTG TTTGCTTCCG CCAACCATGA CGTTCACTGT GTCACATGCT TCACACTTCT AATTCATTTC
CCCTACCAGC ACAACTCTAT AAATACCTCT CAACTTTCTC TCCATCCTCA CTCATCTTCT TCTTCCACTC CTTCTCATCT
TCTCTTAACC AAAGAGCTAG ACCTTCAGTT ACTCTTCCCT CACTCACAAA CACATCCTCT ACCCGTCATG GCCATTGCTG
CTGACTTATC TCCATCCCCT CCTGCACTTC CTCCCACTTG TGATGACAAG AACGCAAAGG CTTTGCGTTT CATTGAGGAA
ATGACCCGAA ACACTGTCCT TGTCCAAGAG AAAGTTCTTG CAGAGATTCT GAGCCAAAAC GCTCAGACTG AGTACCTCAA
ACGGTTTCAG CTCAATGAAG CCACGGACCG TCACACTTTC AAGTCCAAGG TTCCTGTCGT TTCGTACGAG GATTTGAAGA
ATGATATCCA ACGCATTGCT AACGGTGATC GCTCCCCTAT CCTCTGCGCT CGCCCAATCT CTGAGTTTCT CACTAGGTTC
GTACATACCT ACATTAGTAA CTCTCTGCAT TACACGGTTG TAAACTATAT TGATTAACCG ACAAACTTTA ATTGGAGTAA
GATAGATATT TGTATTGAAA ATTTTACCCA TTAGGCATCA ACTTTAATAC CATATACAAT TCCTAAGGCA ATGTTTTGTT
ATTTTTCATG TATTCATTAA TTATGTTTGA CTTGAGTGAA TTAACTAACC TTGGGCGAAA CTGCAGTTCT GGAACATCTG
CTGGGGAGAG AAAATTGATG CCAACGATTC GTGAAGAGAT GGACCGTCGT CAGTTGCTTT ACAGCCTTCT GATGCCAGTG
ATGAGCCAGT ATGTTTCCGT TCCTTAGACA TGCGTAAATA TAGTGTTTTA TGTCACGAAC TAACTCATGT GAATACATTG
TTACGTTACA CAGATACGTG CCTGGGTTGG ACAAGGGTAA GGCGCTCCTG TTTCTGTTCA TCAAAGCGGA GACGAAGACG
CCAAGTGGGT TAGTGGCACG TCCCGTGCTG ACCAGCTACT ACAAGAGCGA GCAATTCAAA AACAGACCCC ACGACCCATA
CAACGTGTAT ACAAGCCCCG ATGAAGCAAT CCTCTGCCCC GATTCCTTCC AGAGCATGTA CACGCAAATG CTATGCGGCC
TCATCATGCG CCATGAGGTT CTCAGAGTCG GTGCCATTTT CGCATCAGGC CTTCTTCGAG CTATCCGCTT CCTACAGCTC
AATTGGGCGC AATTAGCCCA CGACATCTCC ACCGGAACCC TAAACCCAAA AATCACCGAT CCTGCCATCA CTGAACGCAT
GGCTCAAATC CTGAAACCAA ACCCGGAACT TGCCAATTTC ATTACCAAAG AATGTTCTGG AGAAAACTGG GAACGCATAA
TCACCAGAAT CTGGCCAAAC ACGAAGTATC TGGATGTGAT TGTGACAGGT GCCATGGCGC AGTATATTCC AACTCTCGAA
TATTACAGCG GAGGCCTACC TCTCGCTTGC ACCATGTACG CCTCCTCGGA GTGTTACTTT GGCCTTAATC TAAACCCGAT
CTGCAACCCC TCTGATGTAT CATATACCAT CATGCCAAAC ATGGGTTACT TCGAGTTCTT GCCTCACGAC GATTCCTCTT
CAACTTCATC TTCCACCTTG CTGTCACGTG ACTCGCCACC GCCTTTAGTC GACCTTGCTG ACGTCGAAGT CGGTAAATCC
TACGAACTCG TTCTTACTGG ATACTCTGGC CTGTGCCGCT ACCGCGTGGG CGACGTGCTC CAGGTGACGG GGTTCCACAA
CAACGCCCCG CAGTTCCACT TCGTGAGGAG AAAGAACGTG CTTCTGAGCA TTGACTCCGA TAAAACGGAC GAGGCTGAGC
TGCAGAACGC CGTGGAGAAC GCCTCGGTGC TGTTGAAGGA ATTCAACACG AGCGTGGTGG AGTACACGAG CTTCGCGGAC
ACGAAGTCGA TCCCGGGGCA CTACGTGATT TACTGGGAGC TGTTGATGAA GGACTCGAGC CACGCTCCCT CAGGCGACGT
GCTGGAGAAG TGCTGTTTGA CTATGGAGGA GTCGCTGAAC GCCGTGTATA GACAAGGGAG AGTCTCGGAC CGTTCTATTG
GCCCGCTGGA GATTCGTGTG GTGAAGAACG GAACCTTTGA AGAGCTTATG GACTACGCCA TCTCCCGAGG CGCCTCGATT
AACCAGTACA AGGTGCCACG CTGCGTCACC TTCACTCCCA TAACCGAGTT GTTGGATTCC AGGGTAGAGT CCGTTCACTT
TAGCCCCGCA GAACCTCATT GGACTCCGGA ACGTCGTTGT TGAAGGGTTG CTACGTAATA CGTAACATGC AATAATACGC
GATATTATTG TTAATAAAAA TGATAATAAT GAGATGAATA AATAATAATA AAAAAGTAAG CAAGTGAGGG AAAAGAGAGT
GAAGGAATGG GTGATGGTTG GCACATCAGT GAACCCTTGA AACTGTCTGG ATCGGTTGAT TTGATGTTAC GTGTCTTTCA
TGAAATAAAA AAAGTTTGTG TTTTGTTTTT GATTTCTGTC TGTCACAGTA AGCTTCAACG ACATCATTGA AGACATCTTT
GTCTTTTCGT GTAGGGAATC CATTATGTGC ACGCTTTTAA 

>Vigan.01G353800.01
AGGATACAGT TAGAGGGCAA AAATAGGGAG TGATAAGTTG CAAAATGGTG GAGCCAAGTT TTCTCCTAAG TAAGTAAAAA
CTTCTCACAG TCCCTGGCGC AGCCGGCAGC CATCACTTTC TGATACCAAC ACACCCTACA ACCCCATGGC CGCATGGTTC
GCCCCTAAGG ACAACACTCA CGAAACTTTT GCTGATGTGG CGACATATGT GGACCCACAT GTCGGCCACA ATGCTTCATA
CCTGGCCCAC CTGTCTCCTC AATAAGCTAC ACTATCTGAA ACACACAATC CTTTGTCGCG CGGATCCCCA TTAACTCCTA
CAACGTCATT CCAAGCGCTG TTTGCTTCCG CCAACCATGA CGTTCACTGT GTCACATGCT TCACACTTCT AATTCATTTC
CCCTACCAGC ACAACTCTAT AAATACCTCT CAACTTTCTC TCCATCCTCA CTCATCTTCT TCTTCCACTC CTTCTCATCT
TCTCTTAACC AAAGAGCTAG ACCTTCAGTT ACTCTTCCCT CACTCACAAA CACATCCTCT ACCCGTCATG GCCATTGCTG
CTGACTTATC TCCATCCCCT CCTGCACTTC CTCCCACTTG TGATGACAAG AACGCAAAGG CTTTGCGTTT CATTGAGGAA
ATGACCCGAA ACACTGTCCT TGTCCAAGAG AAAGTTCTTG CAGAGATTCT GAGCCAAAAC GCTCAGACTG AGTACCTCAA
ACGGTTTCAG CTCAATGAAG CCACGGACCG TCACACTTTC AAGTCCAAGG TTCCTGTCGT TTCGTACGAG GATTTGAAGA
ATGATATCCA ACGCATTGCT AACGGTGATC GCTCCCCTAT CCTCTGCGCT CGCCCAATCT CTGAGTTTCT CACTAGTTCT
GGAACATCTG CTGGGGAGAG AAAATTGATG CCAACGATTC GTGAAGAGAT GGACCGTCGT CAGTTGCTTT ACAGCCTTCT
GATGCCAGTG ATGAGCCAAT ACGTGCCTGG GTTGGACAAG GGTAAGGCGC TCCTGTTTCT GTTCATCAAA GCGGAGACGA
AGACGCCAAG TGGGTTAGTG GCACGTCCCG TGCTGACCAG CTACTACAAG AGCGAGCAAT TCAAAAACAG ACCCCACGAC
CCATACAACG TGTATACAAG CCCCGATGAA GCAATCCTCT GCCCCGATTC CTTCCAGAGC ATGTACACGC AAATGCTATG
CGGCCTCATC ATGCGCCATG AGGTTCTCAG AGTCGGTGCC ATTTTCGCAT CAGGCCTTCT TCGAGCTATC CGCTTCCTAC
AGCTCAATTG GGCGCAATTA GCCCACGACA TCTCCACCGG AACCCTAAAC CCAAAAATCA CCGATCCTGC CATCACTGAA
CGCATGGCTC AAATCCTGAA ACCAAACCCG GAACTTGCCA ATTTCATTAC CAAAGAATGT TCTGGAGAAA ACTGGGAACG
CATAATCACC AGAATCTGGC CAAACACGAA GTATCTGGAT GTGATTGTGA CAGGTGCCAT GGCGCAGTAT ATTCCAACTC
TCGAATATTA CAGCGGAGGC CTACCTCTCG CTTGCACCAT GTACGCCTCC TCGGAGTGTT ACTTTGGCCT TAATCTAAAC
CCGATCTGCA ACCCCTCTGA TGTATCATAT ACCATCATGC CAAACATGGG TTACTTCGAG TTCTTGCCTC ACGACGATTC
CTCTTCAACT TCATCTTCCA CCTTGCTGTC ACGTGACTCG CCACCGCCTT TAGTCGACCT TGCTGACGTC GAAGTCGGTA
AATCCTACGA ACTCGTTCTT ACTGGATACT CTGGCCTGTG CCGCTACCGC GTGGGCGACG TGCTCCAGGT GACGGGGTTC
CACAACAACG CCCCGCAGTT CCACTTCGTG AGGAGAAAGA ACGTGCTTCT GAGCATTGAC TCCGATAAAA CGGACGAGGC
TGAGCTGCAG AACGCCGTGG AGAACGCCTC GGTGCTGTTG AAGGAATTCA ACACGAGCGT GGTGGAGTAC ACGAGCTTCG
CGGACACGAA GTCGATCCCG GGGCACTACG TGATTTACTG GGAGCTGTTG ATGAAGGACT CGAGCCACGC TCCCTCAGGC
GACGTGCTGG AGAAGTGCTG TTTGACTATG GAGGAGTCGC TGAACGCCGT GTATAGACAA GGGAGAGTCT CGGACCGTTC
TATTGGCCCG CTGGAGATTC GTGTGGTGAA GAACGGAACC TTTGAAGAGC TTATGGACTA CGCCATCTCC CGAGGCGCCT
CGATTAACCA GTACAAGGTG CCACGCTGCG TCACCTTCAC TCCCATAACC GAGTTGTTGG ATTCCAGGGT AGAGTCCGTT
CACTTTAGCC CCGCAGAACC TCATTGGACT CCGGAACGTC GTTGTTGAAG GGTTGCTACG TAATACGTAA CATGCAATAA
TACGCGATAT TATTGTTAAT AAAAATGATA ATAATGAGAT GAATAAATAA TAATAAAAAA GTAAGCAAGT GAGGGAAAAG
AGAGTGAAGG AATGGGTGAT GGTTGGCACA TCAGTGAACC CTTGAAACTG TCTGGATCGG TTGATTTGAT GTTACGTGTC
TTTCATGAAA TAAAAAAAGT TTGTGTTTTG TTTTTGATTT CTGTCTGTCA CAGTAAGCTT CAACGACATC ATTGAAGACA
TCTTTGTCTT TTCGTGTAGG GAATCCATTA TGTGCACGCT TTTAA

>Vigan.01G353800.01
ATGGCCATTG CTGCTGACTT ATCTCCATCC CCTCCTGCAC TTCCTCCCAC TTGTGATGAC AAGAACGCAA AGGCTTTGCG
TTTCATTGAG GAAATGACCC GAAACACTGT CCTTGTCCAA GAGAAAGTTC TTGCAGAGAT TCTGAGCCAA AACGCTCAGA
CTGAGTACCT CAAACGGTTT CAGCTCAATG AAGCCACGGA CCGTCACACT TTCAAGTCCA AGGTTCCTGT CGTTTCGTAC
GAGGATTTGA AGAATGATAT CCAACGCATT GCTAACGGTG ATCGCTCCCC TATCCTCTGC GCTCGCCCAA TCTCTGAGTT
TCTCACTAGT TCTGGAACAT CTGCTGGGGA GAGAAAATTG ATGCCAACGA TTCGTGAAGA GATGGACCGT CGTCAGTTGC
TTTACAGCCT TCTGATGCCA GTGATGAGCC AATACGTGCC TGGGTTGGAC AAGGGTAAGG CGCTCCTGTT TCTGTTCATC
AAAGCGGAGA CGAAGACGCC AAGTGGGTTA GTGGCACGTC CCGTGCTGAC CAGCTACTAC AAGAGCGAGC AATTCAAAAA
CAGACCCCAC GACCCATACA ACGTGTATAC AAGCCCCGAT GAAGCAATCC TCTGCCCCGA TTCCTTCCAG AGCATGTACA
CGCAAATGCT ATGCGGCCTC ATCATGCGCC ATGAGGTTCT CAGAGTCGGT GCCATTTTCG CATCAGGCCT TCTTCGAGCT
ATCCGCTTCC TACAGCTCAA TTGGGCGCAA TTAGCCCACG ACATCTCCAC CGGAACCCTA AACCCAAAAA TCACCGATCC
TGCCATCACT GAACGCATGG CTCAAATCCT GAAACCAAAC CCGGAACTTG CCAATTTCAT TACCAAAGAA TGTTCTGGAG
AAAACTGGGA ACGCATAATC ACCAGAATCT GGCCAAACAC GAAGTATCTG GATGTGATTG TGACAGGTGC CATGGCGCAG
TATATTCCAA CTCTCGAATA TTACAGCGGA GGCCTACCTC TCGCTTGCAC CATGTACGCC TCCTCGGAGT GTTACTTTGG
CCTTAATCTA AACCCGATCT GCAACCCCTC TGATGTATCA TATACCATCA TGCCAAACAT GGGTTACTTC GAGTTCTTGC
CTCACGACGA TTCCTCTTCA ACTTCATCTT CCACCTTGCT GTCACGTGAC TCGCCACCGC CTTTAGTCGA CCTTGCTGAC
GTCGAAGTCG GTAAATCCTA CGAACTCGTT CTTACTGGAT ACTCTGGCCT GTGCCGCTAC CGCGTGGGCG ACGTGCTCCA
GGTGACGGGG TTCCACAACA ACGCCCCGCA GTTCCACTTC GTGAGGAGAA AGAACGTGCT TCTGAGCATT GACTCCGATA
AAACGGACGA GGCTGAGCTG CAGAACGCCG TGGAGAACGC CTCGGTGCTG TTGAAGGAAT TCAACACGAG CGTGGTGGAG
TACACGAGCT TCGCGGACAC GAAGTCGATC CCGGGGCACT ACGTGATTTA CTGGGAGCTG TTGATGAAGG ACTCGAGCCA
CGCTCCCTCA GGCGACGTGC TGGAGAAGTG CTGTTTGACT ATGGAGGAGT CGCTGAACGC CGTGTATAGA CAAGGGAGAG
TCTCGGACCG TTCTATTGGC CCGCTGGAGA TTCGTGTGGT GAAGAACGGA ACCTTTGAAG AGCTTATGGA CTACGCCATC
TCCCGAGGCG CCTCGATTAA CCAGTACAAG GTGCCACGCT GCGTCACCTT CACTCCCATA ACCGAGTTGT TGGATTCCAG
GGTAGAGTCC GTTCACTTTA GCCCCGCAGA ACCTCATTGG ACTCCGGAAC GTCGTTGTTG A

>Vigan.01G353800.01
MAIAADLSPS PPALPPTCDD KNAKALRFIE EMTRNTVLVQ EKVLAEILSQ NAQTEYLKRF QLNEATDRHT FKSKVPVVSY
EDLKNDIQRI ANGDRSPILC ARPISEFLTS SGTSAGERKL MPTIREEMDR RQLLYSLLMP VMSQYVPGLD KGKALLFLFI
KAETKTPSGL VARPVLTSYY KSEQFKNRPH DPYNVYTSPD EAILCPDSFQ SMYTQMLCGL IMRHEVLRVG AIFASGLLRA
IRFLQLNWAQ LAHDISTGTL NPKITDPAIT ERMAQILKPN PELANFITKE CSGENWERII TRIWPNTKYL DVIVTGAMAQ
YIPTLEYYSG GLPLACTMYA SSECYFGLNL NPICNPSDVS YTIMPNMGYF EFLPHDDSSS TSSSTLLSRD SPPPLVDLAD
VEVGKSYELV LTGYSGLCRY RVGDVLQVTG FHNNAPQFHF VRRKNVLLSI DSDKTDEAEL QNAVENASVL LKEFNTSVVE
YTSFADTKSI PGHYVIYWEL LMKDSSHAPS GDVLEKCCLT MEESLNAVYR QGRVSDRSIG PLEIRVVKNG TFEELMDYAI
SRGASINQYK VPRCVTFTPI TELLDSRVES VHFSPAEPHW TPERRC*