GBrowse Details

Vigan.01G300600.01

Basic Information:
Name: Vigan.01G300600.01
Multiple alignment
Variant Information
Position: Chr01:42656759..42661989 (+ strand)
Length: 5231
Functional Information:
Description: Similar to D-aminoacyl-tRNA deacylase. [G7LG90, Medicago truncatula]
GO: Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
Molecular Function: D-aminoacyl-tRNA deacylase activity (GO:0051499)
InterPro: D-aminoacyl-tRNA deacylase (IPR007508)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.79,5.92,4.81,4.91,6.95,4.93,5.37,2.70
Arabidopsis thaliana homolog: AT2G03800.1
Automatic updates:
Name: NM_001253198 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max D-aminoacyl-tRNA deacylase-like (LOC100808796), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:42656759..42656774 (+ strand)
Length: 16
Type: five_prime_UTR
Position: Chr01:42656775..42657053 (+ strand)
Length: 279
Type: CDS
Position: Chr01:42657138..42657321 (+ strand)
Length: 184
Type: CDS
Position: Chr01:42657406..42657548 (+ strand)
Length: 143
Type: CDS
Position: Chr01:42657792..42657855 (+ strand)
Length: 64
Type: CDS
Position: Chr01:42659134..42659186 (+ strand)
Length: 53
Type: CDS
Position: Chr01:42659395..42659450 (+ strand)
Length: 56
Type: CDS
Position: Chr01:42659735..42659809 (+ strand)
Length: 75
Type: CDS
Position: Chr01:42660405..42660590 (+ strand)
Length: 186
Type: CDS
Position: Chr01:42661716..42661803 (+ strand)
Length: 88
Type: CDS
Position: Chr01:42661804..42661989 (+ strand)
Length: 186
Type: three_prime_UTR

>Vigan.01G300600.01 class=Sequence position=Chr01:42656759..42661989 (+ strand)
AATAATTTGG TAAGTGATGT TAGCAGTGGG CAAGCTATTG CAGCTTCCAT TTCTTTCGCT TGTAAACCAT GGGCTCAGAT
CTTCAAAGCC AATTTCCATT CGCTGTCGTA TAAATACATC ATATTCCTCC CGAATTACCC CCAACGCATT TTCACAACAC
AAACACAAAC ACAAACATCT CTCCGACAAA GTAATGGTGG CGCTCCTTGT GGCAACCTCC TCCGACCCTG CTTCCATCAA
CCCGGCCAAT GCGCTGTTGG CCATGCCCGG GTGGCAACCC GGTCCCCATT TCCAGGTTCA AAGCAGCAAC CATTTATGGG
TACCCATCAT GCACCTTTGC TGTTTTAATT GTTATTTTTG GTTGTGTTTG GTCCACTAGG ATGATATGAA GAGCTTTGTG
AATGAAGGGG TGAGGGTGTT GCTGCATGCA AAGAGCATAG TGGAGGAGGA TGATTTAGAC AGGAGGTGGG AGGAGGTGAC
TGGGGAGGCT GTTAATGAGG TCATCTTCTT TAGCAAACAC ACTGCTGTGT CCAACAAACC TGCCCTCACT GTCCACCCCA
TTGGTAAGTC TTCACTTTCT CTCTGCTTCT TTTTGTTTGT GTGTCTTGTA ATGATTTTTT TGGTGCTGTA TGTCTGTGTG
TCTGCAGGCG TTCCTCATTT GCGTGAAGGT GACGTTCCAC CTCAAGGTGG AAGACCTGGA TGGGCAGCGC TGCCAAATCC
TAGGATGGGG CCTTGGCTTC GCCTTTTGAA AAACATGGCT CAGGCTCATA ATCTGGTCCC TGAATTCGAG GTTTGTTTGT
TTGTTTGTTT GATTGGTTGG TATTTAGACC GGTTTTCTTT ACTTGGCTTT TGATGTTGTT TCTTGCGTGA CGTTTTCTTT
GATTGGCTTT CGTTCGTTTC TCTAGTTATA TCTTCGGTAT TTCTGGTTTA GATTCAGCAT TCCTGCAATT GCATGGCTTG
TTTCCTGTTG AAGGAAGATG ATGATGTTAA ATTTTTAAAA GCAATTCTGC AGAATTTAAT TTTCTCAATG TAGATTACTT
TGGAGGCTAC TCACCATGGA CCGTTGACAA ATAAGCCGAC CATGTTTCTG GAGATTGGTG AGTGTTTTTT CCTTCCTTCT
AGACCTATTA TGCATTGATA GGTTATATAT ATTGTATTTT ACCAGCAAAT TGCATGATCG ATTAGTTAAG TACTCGGAAA
ATATTTTGTT GTCTCTGCAT CCTCCATCGT TTGTTTTTCA GATCAAGTGA GTCTTCATTT TGATGTTTAA TCCCCTTTTC
CATTTATATC CATTTTCTCC TTTTTTGAAA GTATTGCTTA CTTGCAAAGA AGGTTTGATC TTGTCTATGT TTTCCATATG
AGACAAAATA TTGTATGCTA AAGAGAGATA AAATGGAGTT TCTAGATCAG TGATGTTATT TTAGCTTATT TTTTCATTTG
AGTATATAGG GCATCTCTGC CCTTCCCTCT CTATGTTCCT TTGTTTAATT TAGGACATTG GTTCAATCGG TGAAATTTGT
TTCCACCTAA AGAAAGTTCC CTTAGCTTTT CTTTGGCATA AATTTTGGGT AAGATAGGTA TTTCTATCAC GTCTCACCTC
CTTGGACCAA GAACAGCACC ACTCTCACTC TTTTTTCTGT CCCATAGAGG TAAATGAAGA AGAGTTAGTC TGGCCAGGGA
TTTGAGAACT GGATCACTGG ATTGATCCAA GAAAAGGGAT CCTCTCTCTC AAACATGGAC ATTCCACCTC CTTGGTTGAC
ATTCGAGTTT TATTGAGATG GGTATCATTG GTCGAGTTCC CGGGAAATTC TGGTTGTCCA ACATCTTTCT TCCCCGCCAC
ATTCTTCAGT TCCAACAGTG TGGTATTCGG CTTTTGAAGC TGATCCATGC GAGTTTGGAT AGCTTCCTGG AAAGCAGCTT
CTATTGCTCT TTCAAGGTTC ATTTGAGCTT CCAAAAGGTC CACTTACCAA GTCATATTCA GTGGTATCTG GCAAGTTGAG
CCAATTGTTT GGTTTGGGAC TGTAAATGAC TAAAGATTGT ATCACTCACC CCAACACACA CCAGAGAAGA CTTTTGATGA
TCTTCAACTA CATATTATTG ATTCTCTCTC CTCCTCTTTA TTCCTTGTAG CTAACTCACT ACATGCCATT GTCTTCTTTT
CTTGCCCGCT CAACCCCCCC TATTTTTATG TTTTCTATAA TAAATGTGCC AAACTTGTGC TTATTTTCCA CATTTTGTAT
CAGCTGGCCC AAGTTTTCCT GTCTTATCAT ACCATAGTTT GTGGCTGATT AATTTCATGC TCAAGTTACA CTGGAAGCTG
CTACCAGTTA GATAGTACTG CTTAACACAA CAACTCTTTT TCTATTCTGG TATAGGTAGT ACTGAAGACT ACTGGAAGAG
ACAGGATGCT GCTCAAGTTA TGGCACAGGT TGGGCGGGGT TCTTAATAAT TTTTTTCATT ACTTTTCCAT CAATATCTGA
ATTTCCCTGT ATGGAGATCA TATTCTTTTA CACAATTTCT TCTGAGTGAA AAAAAACTTC CCTCTAACTG TCTATACCAT
AATAAATGCT TTAGTGACAA CTGATTGGTA ATATTTATTT AGTTGCTGAA ATGATATTTT GTTTGGGTTT TTTTAGTTAG
TCTGGGAAGG ACTTGGACTT GGAGGTGGGA CAGATGTAGG AAACTGGAGC AGGTAAATTT ATCAAGCCAA CTTAAACAAA
TGCAGTGACG ATAGTTTGCA TACTCATTTT ATTTGGCATA TACCTCCCGA GGTCTTCACA TCTTGCTCTA TTTCAGTATC
CTCAGATGCA ATATATGTTT AATATTTGGC TCTTTGATCT TACAATTCCT TTCTTGGTGG ACTGTATGTT TTCCTGAAAC
ATTTAAATTG TTTGTGTTAT TACATAATTA TCATTAAATC TTCCAACTAC AAATGGTGAT TTTTTTGTAA CCTGAACCTA
AATCTCACTC TTACAGGGAG AAGGATAACA AGAAAATTCT TCTTGGGATA GGTGGTGGAC ATTATGCGCC TCGACATATG
GATGTAGTAT TGTAAGTAAT CATATCAGTC ATAGCGGATC ATGTCTGTAT AATTTATGTT TTTGATATCA AAGAAACTGA
ACTATGCAGC TATTGGACGT TATTAACTTT TGGGTTATTC TGAAAACCTA ACTTAGTTTA TTCTGCAATT TGCTCCCTAT
ATTGGGAGTT CTCTTGCTTT TTAAGCTTTC CATTATTCAA ACTCACTCGC ATCATTCGTT TACTTGCTAT GCAATGAAGA
CTTTGTCATA GTATTAATAA AATTGATAAG TAAACATAGC TATTTGGTCT TCATCAACAT TTTTATCATT ACATTATCCA
TAAACTTCCA TCATCAAATT TAATGTCCCC CTGATGAAGG GATATAAATT GTACATTCAA ATATACTACG AAAATATAAT
GACTATAAAG CTTTGTATTA TTACATCATG ACTTAGGCTG AATAAACTTT TAAATCCATT TGAGAAGATA TATACATAAA
ATTTTATGAT CATGAAAAAG CTTTTTGTAC CTTGCCAGTT TAAAATTTTA TAATTTTTGT GTGCATTATA TTTTCTGTGT
TTTGCTCAAA TAAAATATGA ATACTTACTC TGCTTATCCA ATCTAGGAAA GATAATGTGT GGGTGGGTCA CCTACTTTCT
GGATATTCAG TGCCAATGGA AGATCCAAAG CAGTCAAAAG GAGAAAAAGA TGTGGAGATT GGTGGAACAT GGAGAGAGTC
TATAAAGGCT GCATATGAGG CCACTAAGTC TGCCTTTCCT GGTGGGGAAA TTCTTGCACA CCTAGACAAC AAGTGAGCTT
AATGAATATT GTCCTATGCA GTCAGAAATC TATTTGTATT GCTAATGCCA AAGCAAGAAT TGAATGATAT TTCTTGGATG
AGTGCTGAAC AGTTTATAAA AATATATTCC ATAGACCCAA CAATTTGCCA AAGGCTTCCA CCTGCCATTC TCTTACAGCA
ATAGATTGCA AAGAAAATGG TGGAACAGCC TTTGGGTTAG GGAAAAGTGG AAAAAAGTGA TAACTCCCTT TCCATCATCC
CTGACTCCCA CCTAGTTTGC GGACTTTTGG GCATTCTTCT TCACGGATTA ATGAAGGCCT ACTAAAGGAA AGTCACAAAA
CAAGTTTCTT GTAGAATCAA CCTGGACCCT TCCTAGTTCT TTCCGTTGGT TACAGTTTTC ACTTATCAAG AGTCATCTTC
ACTTCTTCTA ATGTCTTACG AGTAGCCAAT CAAGTGGCCG GCAAGCATGG TATGGAGCTT TAAACACAAA GTCGTAGCTT
TGAAGTTGAT CTGGATTTTA TTTCTGTACT GCTTGAGGAC AGAGTTATCA TGTACAAGTT TTCGTAGGGG TTTTTGGTGC
CTCAATTTGA TCACCAAAAA AAGGCAGTGA GCAAACTAGC CCCAAGGTTG CTCACTTTCC AAATTAGTGG TCATTCACAT
TCCCCACGCC TCCATTGCTG ACAGATTTTT ATTACTGGGT TTGCTTGTTA GTAGTTTAAG TTAACGCTCT GATAACATGC
TCATGTCAAC TGCAAAATTT TTTAGATTCA AATAAGTATA GATGAGGGTT TTCTGCACTA GGAAAAAAAC AAGAAAGAAG
AAAACACTCT ATGTGCAGGG CATGCTGCTG TCATTTGGAC CTTGTTTCTG TTCCCAAATT ACATATATTT TGTCCTTGAT
TACTAAAGTG ATGTTCTTAG GAGTACTTTC AATGTTTCCT GTGTCTGTCC TTTTTTAGCT TTTATGGTTT TACACGAAGA
AGGAAGTGGA ATATTATGGA CGTATATTGA AAATTAAGAT ATTTAAGTAT GATTTTAGCT GTGAAGGTGA TCCTGGCTTT
AACATCACAG ATAGACCTTA ATGTTTTTTC CTTTTACTCA AGTTAGTCTT TACTCTAAAC TAGTTTTTCT TCTGCAGGAG
TTTCAAGGGC TGGCAGAGGA ATGCTATAAC AGGATTCCTT GCGGAGCAGA ACATTAAAAT TGGAAAACCG AATAACTTCT
ATTGAGGGCT GGCTGACTTT GGATGATATT ATGTCATCAA CTCTGCAGAT TTTGACAGGC CATACTAGAA ATTTTATTCA
GTTCCCTTGA GAGCATTGTG ATAGTTAAAG AATAGCTGAA GTATGAGATG CACTGATAAA TTCCAATTCT TATGAAAAAC
AGTATTTACT TTATTTAAAA TCATATAGCA G

>Vigan.01G300600.01
AATAATTTGG TAAGTGATGT TAGCAGTGGG CAAGCTATTG CAGCTTCCAT TTCTTTCGCT TGTAAACCAT GGGCTCAGAT
CTTCAAAGCC AATTTCCATT CGCTGTCGTA TAAATACATC ATATTCCTCC CGAATTACCC CCAACGCATT TTCACAACAC
AAACACAAAC ACAAACATCT CTCCGACAAA GTAATGGTGG CGCTCCTTGT GGCAACCTCC TCCGACCCTG CTTCCATCAA
CCCGGCCAAT GCGCTGTTGG CCATGCCCGG GTGGCAACCC GGTCCCCATT TCCAGGATGA TATGAAGAGC TTTGTGAATG
AAGGGGTGAG GGTGTTGCTG CATGCAAAGA GCATAGTGGA GGAGGATGAT TTAGACAGGA GGTGGGAGGA GGTGACTGGG
GAGGCTGTTA ATGAGGTCAT CTTCTTTAGC AAACACACTG CTGTGTCCAA CAAACCTGCC CTCACTGTCC ACCCCATTGG
CGTTCCTCAT TTGCGTGAAG GTGACGTTCC ACCTCAAGGT GGAAGACCTG GATGGGCAGC GCTGCCAAAT CCTAGGATGG
GGCCTTGGCT TCGCCTTTTG AAAAACATGG CTCAGGCTCA TAATCTGGTC CCTGAATTCG AGATTACTTT GGAGGCTACT
CACCATGGAC CGTTGACAAA TAAGCCGACC ATGTTTCTGG AGATTGGTAG TACTGAAGAC TACTGGAAGA GACAGGATGC
TGCTCAAGTT ATGGCACAGT TAGTCTGGGA AGGACTTGGA CTTGGAGGTG GGACAGATGT AGGAAACTGG AGCAGGGAGA
AGGATAACAA GAAAATTCTT CTTGGGATAG GTGGTGGACA TTATGCGCCT CGACATATGG ATGTAGTATT GAAAGATAAT
GTGTGGGTGG GTCACCTACT TTCTGGATAT TCAGTGCCAA TGGAAGATCC AAAGCAGTCA AAAGGAGAAA AAGATGTGGA
GATTGGTGGA ACATGGAGAG AGTCTATAAA GGCTGCATAT GAGGCCACTA AGTCTGCCTT TCCTGGTGGG GAAATTCTTG
CACACCTAGA CAACAAGAGT TTCAAGGGCT GGCAGAGGAA TGCTATAACA GGATTCCTTG CGGAGCAGAA CATTAAAATT
GGAAAACCGA ATAACTTCTA TTGAGGGCTG GCTGACTTTG GATGATATTA TGTCATCAAC TCTGCAGATT TTGACAGGCC
ATACTAGAAA TTTTATTCAG TTCCCTTGAG AGCATTGTGA TAGTTAAAGA ATAGCTGAAG TATGAGATGC ACTGATAAAT
TCCAATTCTT ATGAAAAACA GTATTTACTT TATTTAAAAT CATATAGCAG 

>Vigan.01G300600.01
ATGTTAGCAG TGGGCAAGCT ATTGCAGCTT CCATTTCTTT CGCTTGTAAA CCATGGGCTC AGATCTTCAA AGCCAATTTC
CATTCGCTGT CGTATAAATA CATCATATTC CTCCCGAATT ACCCCCAACG CATTTTCACA ACACAAACAC AAACACAAAC
ATCTCTCCGA CAAAGTAATG GTGGCGCTCC TTGTGGCAAC CTCCTCCGAC CCTGCTTCCA TCAACCCGGC CAATGCGCTG
TTGGCCATGC CCGGGTGGCA ACCCGGTCCC CATTTCCAGG ATGATATGAA GAGCTTTGTG AATGAAGGGG TGAGGGTGTT
GCTGCATGCA AAGAGCATAG TGGAGGAGGA TGATTTAGAC AGGAGGTGGG AGGAGGTGAC TGGGGAGGCT GTTAATGAGG
TCATCTTCTT TAGCAAACAC ACTGCTGTGT CCAACAAACC TGCCCTCACT GTCCACCCCA TTGGCGTTCC TCATTTGCGT
GAAGGTGACG TTCCACCTCA AGGTGGAAGA CCTGGATGGG CAGCGCTGCC AAATCCTAGG ATGGGGCCTT GGCTTCGCCT
TTTGAAAAAC ATGGCTCAGG CTCATAATCT GGTCCCTGAA TTCGAGATTA CTTTGGAGGC TACTCACCAT GGACCGTTGA
CAAATAAGCC GACCATGTTT CTGGAGATTG GTAGTACTGA AGACTACTGG AAGAGACAGG ATGCTGCTCA AGTTATGGCA
CAGTTAGTCT GGGAAGGACT TGGACTTGGA GGTGGGACAG ATGTAGGAAA CTGGAGCAGG GAGAAGGATA ACAAGAAAAT
TCTTCTTGGG ATAGGTGGTG GACATTATGC GCCTCGACAT ATGGATGTAG TATTGAAAGA TAATGTGTGG GTGGGTCACC
TACTTTCTGG ATATTCAGTG CCAATGGAAG ATCCAAAGCA GTCAAAAGGA GAAAAAGATG TGGAGATTGG TGGAACATGG
AGAGAGTCTA TAAAGGCTGC ATATGAGGCC ACTAAGTCTG CCTTTCCTGG TGGGGAAATT CTTGCACACC TAGACAACAA
GAGTTTCAAG GGCTGGCAGA GGAATGCTAT AACAGGATTC CTTGCGGAGC AGAACATTAA AATTGGAAAA CCGAATAACT
TCTATTGA

>Vigan.01G300600.01
MLAVGKLLQL PFLSLVNHGL RSSKPISIRC RINTSYSSRI TPNAFSQHKH KHKHLSDKVM VALLVATSSD PASINPANAL
LAMPGWQPGP HFQDDMKSFV NEGVRVLLHA KSIVEEDDLD RRWEEVTGEA VNEVIFFSKH TAVSNKPALT VHPIGVPHLR
EGDVPPQGGR PGWAALPNPR MGPWLRLLKN MAQAHNLVPE FEITLEATHH GPLTNKPTMF LEIGSTEDYW KRQDAAQVMA
QLVWEGLGLG GGTDVGNWSR EKDNKKILLG IGGGHYAPRH MDVVLKDNVW VGHLLSGYSV PMEDPKQSKG EKDVEIGGTW
RESIKAAYEA TKSAFPGGEI LAHLDNKSFK GWQRNAITGF LAEQNIKIGK PNNFY*