GBrowse Details

Vigan.01G281400.01

Basic Information:
Name: Vigan.01G281400.01
Multiple alignment
Variant Information
Position: Chr01:40120073..40123849 (- strand)
Length: 3777
Functional Information:
Description: Similar to Uncharacterized protein. [I1KLT6, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.44,0.29,4.43,11.80,7.36,1.73,29.76,3.86
Automatic updates:
Name: KT031111 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_47 bHLH transcription factor (Glyma07g32690.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:40120073..40120316 (- strand)
Length: 244
Type: three_prime_UTR
Position: Chr01:40120317..40120802 (- strand)
Length: 486
Type: CDS
Position: Chr01:40122793..40123113 (- strand)
Length: 321
Type: CDS
Position: Chr01:40123114..40123849 (- strand)
Length: 736
Type: five_prime_UTR

>Vigan.01G281400.01 class=Sequence position=Chr01:40120073..40123849 (- strand)
GTTGGTTTCC ACTACTCTGA ATGAATAATT CAGTAGTAAC AGTGTCAGCA GAGGAGGGTG GCTATAACAC ATTGACCAAA
TAATGAACAT AAATATAAAA TATTTAGTCA ACATTACGCA CCACATGGAT GTTTTGGTTC AAACTAGGCA TATATGAGTA
AGCTCAAAAC TCAAGATCAT TGTTCAGTGG TGATCCTCTT CTGAATTCTT TCTGCACTTT CAAGACATCA AGCATAGCAT
AACCTTTGTT TCTTGTCAGT ACTCAAACTC ACTGAAATCC AAGTCAGAGT CAAGTCTCAC TTCCCAAAGT TCTTCACCCT
TTTGGCCTTT TCTCATTTGG AAATGGTTGA GCTCAACACC ACCAAGATGA AAACGTGGAT GTTTTCACAC TGATCTTCCA
CCCCTTTAAC CCTTTCAACC CTTTTCCCTT GCCTAATGGA AGTTATGTCC AACACCATCA CCAAACAGAC CACAGTAACA
CCTTCTCAAG GCACCATCCA CTTCCAAAAG CTTTCTTTCT GGTTTGCTCC TCGAACTCGT CCACCCGGTT AACTTCTTTC
TTCTCTTTCT CCTGTGCCTC CACTCCCCTA AAAAGGGTTT TAACAAAAAC GGCTCATGAT CACAGTTTTG GTCCAAAAAT
CAAGCTTTTT AGAGTTTCCC TGATCGTAAT TTTCCTAACC ACTGCAATTC TATCTGCATA GACTGTGTTT GTCTGCAATT
TAAAACCTTT AATATTATGG TTCACTCCTT CTATGAGAAA AGCTCTCCTT CTGGCTCTGA TATTTCGGGG TTGTTCAATC
CCACTTTGCA AAGTGTTGGA GCTTCCAATG GTGAAGTTGC GAAGGGTGGC TTGTCATCGT CACATTCTTT GGTTTATGAG
AGTGAGAAGG GAGAGCTGGT GAAGTGCTCT TCAGCTGCAA AGGTAGGGAA GAATGAGATT TGTGAGGCCA AAGCTTTGGC
TGCTTTGAAG AATCACAGTG AAGCAGAGAG AAGAAGGAGG GAGAGAATAA ACGGTCATCT TGCAACACTA CGTGGCCTTG
TACCATCCAC TGAAAAGGTA TGTTTTTGTT CCTTCCTTTT CCTTCTGTTG GAAATTTGTT CTTTTATTGT GCATGCCTTA
TTACATCACT GAATTATTTC GGCTCTTTAC TTTCCTGATT TCACTTTGAT TCTATAATTG GACAGCGACT GATTCAGAAA
TTTTAAGTGA GAGGACTGTA ATCATATATA TAAATTTGTG GGGACAATAC AATACTCACT TTTTTGTGCT AAATGTGGGG
CAATATTTCA CTGCATTCAA ATTTAGGACG AGATTTGTTA TTATACATGT ATATTGGGAA CCTTAGTTAA TCTAAGTATG
ACTTTTTTAA AATTGCCCTA CTTATTCTAA AAATGGATTT AATCATATAG CATTTCTAAA TTTTTCTATC TAGCCAGTTC
TTTCATAAGA ACAGTGACAA GTTTCAATGA AACACGTATT CTGTTGGTGA TATGAAAAAG GAATAACAGA TTTGATAGAA
GGATGAAGCA GGGTGAAAAA CCATTATGCA GACTTCGTGT TACGTTGAAT CAGTTTAAGT TGAAGGAAGA TGGAAATGCA
AACTATTCTA CCGGGGAGAG TTGAAAATAA AAAATTAGAG TAAGAAAACA TATTTTGAGT TATCAATGAG CTACTTGACA
AAAACAAAAT ACTGACTTTT GACACATTAG GACAGTTTTA CACACAAAGT TCGCTTATGG TAATTTTATT TTCAGTTATG
TCATAATGCT TGTGGCTGTG AATGCACGTT TCCCTTTCAG GCTCCATGTT AATTTTGGAA ATAGAATGGA GCACAGAGTC
TGCTGTATAT AAACACCACA AGTTGAGATT TGAAGCACAT TATTGTAATT AAATAAAGGG CTTTTGATTG CATCATAGTT
GTCCTTATGT GGTCAACTAG GTGTATGGAA GTTGCTCCTT GCTAGAGTCA ACTACCAATA TGCATAAGTT GATTATGTAA
TGTGGAGTTA TTTATTATGA ATCCTCACTT ATTATACTTC ATGTTATAAT ATATTGTTTT AGGATTTCAT ATTCTATACG
TCTAAACCGA AAACCCTTCA TTTATTATTC TATAAGTTAT GTACATGCAA ACCAGATGTT TCCTCTCTGT GCACCGTGTC
ATTAGGTGAG TATTACTGCT GTAGATTATT CTTCATTTAC TTGTGCTAGG TGCCCAAATA TAGCTTCTGA TATTAATACT
ACTTTATTTG TTAAAAGGTT ACTGGTTTAG TTGGATTGCT CTTGGAAATA TTTTTATATA AAAGCCACTT TTTTCTGGGT
TTTTCCTTTA ACAAGTCATA TGAATCAAAT TATTAAACAT TAAACACAGT AGAATGTCAA TTTTGACCAA GTATTTTAAT
TTGATGGTCC TTATCAGAGG AAAATAAATA AAGGAGCATA AATGTCATCT CTCAATCAGA TTGATAGGAT ATTCCTATCA
AGTGTTGTCG TAGACGTGCC AGCTGTTCTT CTGGGTGTCA TATGGCAGAG TCAGTGTATT TAAATATTAT GTGATAGTTT
GTGTTTTGCA TGTTTTGTCT TGTTTTGTTG AACAGACATA TTCTTTTTGT TGGCTAACTG ATAATGGTGA TGCAGGACAT
GGAAGAAAAA CCATCATATG TTTTTTAAGC ATTGGTTAAC CAAAACTAGA GAGTAGTTAG AGACTTAGTT TAATCAAATC
CATAATTAGT ATAATTACTG GATTTGGCTT CATTTGTAAT GAAGTTATCA TACTTATTCA AGCCACCATC ACCACAGGAT
CAATCAACTT GAGTTATCAC TTATCACTCT AATTGGCTTA AGCTGAAGTC ATGTTGATAG GTACCAGAGG TGATAATGAA
AACAATAATG GCAGTAATTA ATCCATGAGG TCACAGTTTT TATTTTTTTA TTGTCTGACA AGAAAAATTA TTGTACTTTT
TATTTCTGAT CATCCTCTCT TTGCTTTAGT AAAACATTTG TTAAAATCTG TTGATTTTGA TTTTGTGGGT CAAATGTTAT
TCCTTAGATG GATAAAGCCA CTTTACTGGC TGAAGTGATA AAGCAAGTGA AGGAATTGAA GAAAACTGCA GTAGAAGTAA
GCAAGGGTTT TCCAATCCCA ATGGATGCAG ATGAAGTGAA AGTTGAACCA TGTGATGGAT CCATGTCTTA CAGTGCAACT
ATTTGCTGTG ATTTTCGACC TGAAATAATA TCTGACCTAA GACAAACCCT TGATTCTCTT CCACTGCATC TAGAGAAGGC
AGAAATTTCA ACTTTGGCAG GAAGAATGAA GAATGTATTC GTCTTCACAT GTTGCAAAGG GAACATTGAT ATTCATACTG
AAGCATGCCA AGCTCTTGCA AGAACTGTTC ATCAGGCACT GTGTTCTGTA CTGGAAAAGG CTTCTGCCTC ACTTGAGTTC
TCACCCAGAA CATCACATGC TAACAAGAGG AGAAGACTAT GCTTTATTGA AACATCCACT TCCTCATGCA ACCATGGATC
TTGTTCGTGT TGATGTCTAC AATTTCATGT GTTATGTTCT TTATTTCATG TGTTACAAAG TGTGGCATTA GTAGCATCAC
ACTTCACTGT ATGTTGTCAA ACATATTTTA TATTACTGGG TCAATCTCAT TAAGTGATAA ATGAGATTCA TTAAATAAGA
TGTGTTATAC CATCATGAAA ATCGCGTTTA TCCAATAATA GAAATTGTGT TATAGAGTTT ATAAGAAAAT GTATTATTAA
TATCTATCTG TTGTTCA

>Vigan.01G281400.01
GTTGGTTTCC ACTACTCTGA ATGAATAATT CAGTAGTAAC AGTGTCAGCA GAGGAGGGTG GCTATAACAC ATTGACCAAA
TAATGAACAT AAATATAAAA TATTTAGTCA ACATTACGCA CCACATGGAT GTTTTGGTTC AAACTAGGCA TATATGAGTA
AGCTCAAAAC TCAAGATCAT TGTTCAGTGG TGATCCTCTT CTGAATTCTT TCTGCACTTT CAAGACATCA AGCATAGCAT
AACCTTTGTT TCTTGTCAGT ACTCAAACTC ACTGAAATCC AAGTCAGAGT CAAGTCTCAC TTCCCAAAGT TCTTCACCCT
TTTGGCCTTT TCTCATTTGG AAATGGTTGA GCTCAACACC ACCAAGATGA AAACGTGGAT GTTTTCACAC TGATCTTCCA
CCCCTTTAAC CCTTTCAACC CTTTTCCCTT GCCTAATGGA AGTTATGTCC AACACCATCA CCAAACAGAC CACAGTAACA
CCTTCTCAAG GCACCATCCA CTTCCAAAAG CTTTCTTTCT GGTTTGCTCC TCGAACTCGT CCACCCGGTT AACTTCTTTC
TTCTCTTTCT CCTGTGCCTC CACTCCCCTA AAAAGGGTTT TAACAAAAAC GGCTCATGAT CACAGTTTTG GTCCAAAAAT
CAAGCTTTTT AGAGTTTCCC TGATCGTAAT TTTCCTAACC ACTGCAATTC TATCTGCATA GACTGTGTTT GTCTGCAATT
TAAAACCTTT AATATTATGG TTCACTCCTT CTATGAGAAA AGCTCTCCTT CTGGCTCTGA TATTTCGGGG TTGTTCAATC
CCACTTTGCA AAGTGTTGGA GCTTCCAATG GTGAAGTTGC GAAGGGTGGC TTGTCATCGT CACATTCTTT GGTTTATGAG
AGTGAGAAGG GAGAGCTGGT GAAGTGCTCT TCAGCTGCAA AGGTAGGGAA GAATGAGATT TGTGAGGCCA AAGCTTTGGC
TGCTTTGAAG AATCACAGTG AAGCAGAGAG AAGAAGGAGG GAGAGAATAA ACGGTCATCT TGCAACACTA CGTGGCCTTG
TACCATCCAC TGAAAAGATG GATAAAGCCA CTTTACTGGC TGAAGTGATA AAGCAAGTGA AGGAATTGAA GAAAACTGCA
GTAGAAGTAA GCAAGGGTTT TCCAATCCCA ATGGATGCAG ATGAAGTGAA AGTTGAACCA TGTGATGGAT CCATGTCTTA
CAGTGCAACT ATTTGCTGTG ATTTTCGACC TGAAATAATA TCTGACCTAA GACAAACCCT TGATTCTCTT CCACTGCATC
TAGAGAAGGC AGAAATTTCA ACTTTGGCAG GAAGAATGAA GAATGTATTC GTCTTCACAT GTTGCAAAGG GAACATTGAT
ATTCATACTG AAGCATGCCA AGCTCTTGCA AGAACTGTTC ATCAGGCACT GTGTTCTGTA CTGGAAAAGG CTTCTGCCTC
ACTTGAGTTC TCACCCAGAA CATCACATGC TAACAAGAGG AGAAGACTAT GCTTTATTGA AACATCCACT TCCTCATGCA
ACCATGGATC TTGTTCGTGT TGATGTCTAC AATTTCATGT GTTATGTTCT TTATTTCATG TGTTACAAAG TGTGGCATTA
GTAGCATCAC ACTTCACTGT ATGTTGTCAA ACATATTTTA TATTACTGGG TCAATCTCAT TAAGTGATAA ATGAGATTCA
TTAAATAAGA TGTGTTATAC CATCATGAAA ATCGCGTTTA TCCAATAATA GAAATTGTGT TATAGAGTTT ATAAGAAAAT
GTATTATTAA TATCTATCTG TTGTTCA

>Vigan.01G281400.01
ATGGTTCACT CCTTCTATGA GAAAAGCTCT CCTTCTGGCT CTGATATTTC GGGGTTGTTC AATCCCACTT TGCAAAGTGT
TGGAGCTTCC AATGGTGAAG TTGCGAAGGG TGGCTTGTCA TCGTCACATT CTTTGGTTTA TGAGAGTGAG AAGGGAGAGC
TGGTGAAGTG CTCTTCAGCT GCAAAGGTAG GGAAGAATGA GATTTGTGAG GCCAAAGCTT TGGCTGCTTT GAAGAATCAC
AGTGAAGCAG AGAGAAGAAG GAGGGAGAGA ATAAACGGTC ATCTTGCAAC ACTACGTGGC CTTGTACCAT CCACTGAAAA
GATGGATAAA GCCACTTTAC TGGCTGAAGT GATAAAGCAA GTGAAGGAAT TGAAGAAAAC TGCAGTAGAA GTAAGCAAGG
GTTTTCCAAT CCCAATGGAT GCAGATGAAG TGAAAGTTGA ACCATGTGAT GGATCCATGT CTTACAGTGC AACTATTTGC
TGTGATTTTC GACCTGAAAT AATATCTGAC CTAAGACAAA CCCTTGATTC TCTTCCACTG CATCTAGAGA AGGCAGAAAT
TTCAACTTTG GCAGGAAGAA TGAAGAATGT ATTCGTCTTC ACATGTTGCA AAGGGAACAT TGATATTCAT ACTGAAGCAT
GCCAAGCTCT TGCAAGAACT GTTCATCAGG CACTGTGTTC TGTACTGGAA AAGGCTTCTG CCTCACTTGA GTTCTCACCC
AGAACATCAC ATGCTAACAA GAGGAGAAGA CTATGCTTTA TTGAAACATC CACTTCCTCA TGCAACCATG GATCTTGTTC
GTGTTGA

>Vigan.01G281400.01
MVHSFYEKSS PSGSDISGLF NPTLQSVGAS NGEVAKGGLS SSHSLVYESE KGELVKCSSA AKVGKNEICE AKALAALKNH
SEAERRRRER INGHLATLRG LVPSTEKMDK ATLLAEVIKQ VKELKKTAVE VSKGFPIPMD ADEVKVEPCD GSMSYSATIC
CDFRPEIISD LRQTLDSLPL HLEKAEISTL AGRMKNVFVF TCCKGNIDIH TEACQALART VHQALCSVLE KASASLEFSP
RTSHANKRRR LCFIETSTSS CNHGSCSC*