GBrowse Details

Vigan.01G179300.01

Basic Information:
Name: Vigan.01G179300.01
Multiple alignment
Variant Information
Position: Chr01:21273983..21277339 (+ strand)
Length: 3357
Functional Information:
Description: Similar to Uncharacterized protein. [I1K377, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: polygalacturonase activity (GO:0004650)
InterPro: Glycoside hydrolase, family 28 (IPR000743)
Parallel beta-helix repeat (IPR006626)
Pectin lyase fold/virulence factor (IPR011050)
Pectin lyase fold (IPR012334)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.23,0.19,12.36,3.92,160.38,15.64,3. 34,15.15
Arabidopsis thaliana homolog: AT1G48100.1
Automatic updates:
Name: NM_001354181 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max polygalacturonase precursor (PG7), mRNA.
PubMed ID: 17916637 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:21273983..21274921 (+ strand)
Length: 939
Type: five_prime_UTR
Position: Chr01:21274922..21275359 (+ strand)
Length: 438
Type: CDS
Position: Chr01:21275542..21275709 (+ strand)
Length: 168
Type: CDS
Position: Chr01:21275833..21275877 (+ strand)
Length: 45
Type: CDS
Position: Chr01:21275960..21276167 (+ strand)
Length: 208
Type: CDS
Position: Chr01:21276270..21276351 (+ strand)
Length: 82
Type: CDS
Position: Chr01:21276509..21277013 (+ strand)
Length: 505
Type: CDS
Position: Chr01:21277014..21277339 (+ strand)
Length: 326
Type: three_prime_UTR

>Vigan.01G179300.01 class=Sequence position=Chr01:21273983..21277339 (+ strand)
GTCAAATTAA TATACTTGTT GTCTCTTTAT TACAAAAGAA CTATTTTTCT TTTTGTTCCT ATATTATTCT GTTATAGACT
AATTATACAT GGCATCATAT ATAAGAATCA TCAGTTATAT ATATATAACA CAAATAAACC AAGAAAATAT ATGTTAAGAA
TTCAAAATAG ATTCTTCTAT TGGATATGGC TTAAAGTAAA AGAAAATTTG CTTCACAATA GCCTAGTAAC TGAAAATTGT
TCAATGTATA AGATTGAGTA ATGTAAGTGA AAAGGACGTG GCATGGGGTA CCAGAAAAGA TGAACTTTTT CATCCACAAA
GGAAGAACAT AACGGATTGG TAAAAGTAGG AAATGGAAAA TCTTTGTGAA ATAATATTTA ATTATCTTAA TATATAAATA
AAAGGTATCC TCATTTCTTT CCCTCTCAAT CTAGCTCCCA AAACAACTTT TAAGCTTAAA ATGAAGGTTA AATATTGAGA
TAAAATTCAA TTTCAATTGA GGAAGAACAT GAAAAAGAAG CATGTAAATT GTTTTCCCTA ACTTTATCAA ACAAATAAAC
TTTTTGAATT TGAATGTAGT AGAGCTTTAA ACAGAATGCT TACCTCTAAA AGTACCTTTT AAAGTTTCTT TGACACTCTG
GCCTTTTCAA CCAACATGAA TTCTACACGT GGCATCCTTA TGGTTTGAGC ATTCCTTGTG TTCCATATCA TACAAGTTTT
CCAATATAAA TATGAGTGCT CTTTGCTAAG CTTCCTCTGG ATATGCATTA AACGTTTTCC ATTCTTCTAT TTCATTCTCA
TCCATTTATC TCAAGAACTA CAAATTCTGA ATTAGAAGTT TTGGTCTATT TACAGAAACA ACTTAGCATC ATTTTGTGGT
CCTTCCCACA TTGGCACACA CATTCACAGA GTGAAAATAT TCACAAACTA GAACCCCTCA TGGATCTCAC AGTTCGTGTA
TGTTCTACTC TATGGATCAT TGTGACCCTT TTGAACCATA ATTTTGGAAA TGTGGAGGGA AGATACCACC ATCACAGCAA
GCAGAGGAGA GTTTCTTCTG TTCCTACTGC TCCTTCTGAT TCTTCCACTG AGCCAGAGAA CCCAAACCCT TCAGTTCCAC
CCCCTGCTGA TTCTCCCACC GTTCCTTCTG ACCCTTATCC AAATGATAAC CAAACCTCCT CTTCTGACTG TGTTTTTGAT
GTGAGATCCT TTGGGGCAGT TGGAGATGGT TGTGCTGATG ACACACCTGC ATTCAGGGCA GCATGGAAAG CAGCATGTGC
TGTGGAGTCT GGAATTCTTC TTGCTCCAGA AGACTACATC TTTAAGATCA CTTCCACTAT TTTTTCAGGT CCATGCAAGC
CAGGATTGGT ATTCCAAGTA AGAATGCTTC TTAAATGCTC ACTTCACATA GTATTTTTGT TTCATGTGTG AGACATGAGA
GAAGTTAATA TTAGCCCTTC ATTCAACCTT GTACACAAGG TTAAGATCAT TTAACTTTAA CTGCCTATGT ATGATAATGA
AAGTATTTCA GTTTGCTAAA AAGTTAGACA AATAACCAGG TGGATGGAAC ACTGATGGCA CCAGATGGAC CAAATTCATG
GCCAGAAAAA GATAGTAGAA ACCAATGGCT TGTATTTTAC CGACTTGACC AAATGACTCT AAATGGTACT GGAACAATAG
AAGGGAATGG AGACAAATGG TGGGATCTCC CTTGCAAACC TCACAGGGTA AACATTTTGT CTTGTCACAA ACACAATCAA
TGTGTGCATT CTTCCCTCAA TTTGTGTTGG TGTGGTTATT TAAAGTTGAA CGGAAACATA TACTAAATGC TTAAAAAATG
GCACTTTCAG GGTCCCAATG GAAAAACTTT GTCAGGACCA TGTGGTAGTC CAGCTGTAAG TAAACTCAAC CAAGCTCGTC
CATTTACTAA CTGTTAAGGT ATCTATAAAT TTGGACTTAC CCTTCTTTTG TTTGTAGATG ATACGATTCT TCATGAGCTC
CAATTTGAAG GTGAATGGGC TTAAAATCCA AAACAGTCCT CAGTTTCACA TGAAGTTTGA TGGTTGCCAA GGAGTGCTGA
TTGATAAGCT CTACATTTCT TCACCAAAAC TGAGCCCCAA CACCGATGGA ATCCATGTAG AAAACTCCAA AGATGTGGGG
ATTTACAACT CCATGATAAG CAATGGTATT GACTATATTG CAATGTTCAC TCACCCCGTT TGATATATTG GTTCAACATT
TCACTGTTTT TTACTTATGC CATAACATAA TCACATGGTT TCAACAGGTG ACGATTGCAT TTCAGTTGGA CCCGGTTCCT
CAAACGTGGA TATAGCAGGT TTAACTTGTG GTCCTAGCCA CGGGATTAGG TACAATGCAG AACCACCACT TGAAAAAAAC
ATTGGAAATG TTATGTTGAA TTTGATAAAC ATCAGCAATT TTGAAACAAA AGTACATGAT TAAGACAAGC ATAGTTTTGG
AAGGAGTATG GCATAACTTT TGTGCGATGG TAATTTGTTT GTGCAGCATT GGAAGTCTTG GAGTGCACAA CTCTCAGGCA
TGTGTGTCAA ACCTGACAGT CCGTGACAGC ATCATAAGAG AATCAGACAA CGGACTAAGA ATCAAGACAT GGCAAGGGGG
AATGGGATCA GTGACAGGTC TGAGATTTGA TAGCATCCAA ATGGAAAACG TTGGGAACTG CATCATCATC GATCAATACT
ACTGTTTGTC AAAGGAATGC CTAAACCAGA GTTCAGCTGT GCACGTGAAT GATGTGTCGT ACAGCAACAT AAAGGGCACC
TATGATGTGA GAACAGCTCC TATTCACTTT GCTTGCAGTG ACAGTGTTGC TTGCACAAAC ATCACTCTGT CTGAGGTTGA
GCTTTTGCCA TTCGAAGGAG CATTGCTTGA TGACCCCTTT TGCTGGAATG CTTATGGGAC ACAGGAGACC TTGACTATAC
CTCCAATCAA TTGCTTAAGG GAAGGTGACC CTGAGACAGT GGGCGATCTT TCTGAATATC AATGCAGTTA AACCAGACAT
GTTACTTATA TCAAATATAT ATATATATAA GGTGGCTTAT AGATACAAGA TATTAGATGA AATATATATG ATATATGATA
TACTATACAT ATATGATAGA ACATTATTAT GTTGATGATG GTTCTCTGTG ATAATCTTTT AGGATTCGTC CCTATCTGGG
TACATTATTC CCATTTTGTG CGATGAGATG CAGAAATTGG TCTCTTTTGG GGCCTACACT CTGTAATAGC TTCATTCAAC
ATTTATATAT TACTACACCT TAATCTTCTT TTTGTGGTTG TAAAAATATT TTCATGCAAA GGTAAACATA ATCTTCT

>Vigan.01G179300.01
GTCAAATTAA TATACTTGTT GTCTCTTTAT TACAAAAGAA CTATTTTTCT TTTTGTTCCT ATATTATTCT GTTATAGACT
AATTATACAT GGCATCATAT ATAAGAATCA TCAGTTATAT ATATATAACA CAAATAAACC AAGAAAATAT ATGTTAAGAA
TTCAAAATAG ATTCTTCTAT TGGATATGGC TTAAAGTAAA AGAAAATTTG CTTCACAATA GCCTAGTAAC TGAAAATTGT
TCAATGTATA AGATTGAGTA ATGTAAGTGA AAAGGACGTG GCATGGGGTA CCAGAAAAGA TGAACTTTTT CATCCACAAA
GGAAGAACAT AACGGATTGG TAAAAGTAGG AAATGGAAAA TCTTTGTGAA ATAATATTTA ATTATCTTAA TATATAAATA
AAAGGTATCC TCATTTCTTT CCCTCTCAAT CTAGCTCCCA AAACAACTTT TAAGCTTAAA ATGAAGGTTA AATATTGAGA
TAAAATTCAA TTTCAATTGA GGAAGAACAT GAAAAAGAAG CATGTAAATT GTTTTCCCTA ACTTTATCAA ACAAATAAAC
TTTTTGAATT TGAATGTAGT AGAGCTTTAA ACAGAATGCT TACCTCTAAA AGTACCTTTT AAAGTTTCTT TGACACTCTG
GCCTTTTCAA CCAACATGAA TTCTACACGT GGCATCCTTA TGGTTTGAGC ATTCCTTGTG TTCCATATCA TACAAGTTTT
CCAATATAAA TATGAGTGCT CTTTGCTAAG CTTCCTCTGG ATATGCATTA AACGTTTTCC ATTCTTCTAT TTCATTCTCA
TCCATTTATC TCAAGAACTA CAAATTCTGA ATTAGAAGTT TTGGTCTATT TACAGAAACA ACTTAGCATC ATTTTGTGGT
CCTTCCCACA TTGGCACACA CATTCACAGA GTGAAAATAT TCACAAACTA GAACCCCTCA TGGATCTCAC AGTTCGTGTA
TGTTCTACTC TATGGATCAT TGTGACCCTT TTGAACCATA ATTTTGGAAA TGTGGAGGGA AGATACCACC ATCACAGCAA
GCAGAGGAGA GTTTCTTCTG TTCCTACTGC TCCTTCTGAT TCTTCCACTG AGCCAGAGAA CCCAAACCCT TCAGTTCCAC
CCCCTGCTGA TTCTCCCACC GTTCCTTCTG ACCCTTATCC AAATGATAAC CAAACCTCCT CTTCTGACTG TGTTTTTGAT
GTGAGATCCT TTGGGGCAGT TGGAGATGGT TGTGCTGATG ACACACCTGC ATTCAGGGCA GCATGGAAAG CAGCATGTGC
TGTGGAGTCT GGAATTCTTC TTGCTCCAGA AGACTACATC TTTAAGATCA CTTCCACTAT TTTTTCAGGT CCATGCAAGC
CAGGATTGGT ATTCCAAGTG GATGGAACAC TGATGGCACC AGATGGACCA AATTCATGGC CAGAAAAAGA TAGTAGAAAC
CAATGGCTTG TATTTTACCG ACTTGACCAA ATGACTCTAA ATGGTACTGG AACAATAGAA GGGAATGGAG ACAAATGGTG
GGATCTCCCT TGCAAACCTC ACAGGGGTCC CAATGGAAAA ACTTTGTCAG GACCATGTGG TAGTCCAGCT ATGATACGAT
TCTTCATGAG CTCCAATTTG AAGGTGAATG GGCTTAAAAT CCAAAACAGT CCTCAGTTTC ACATGAAGTT TGATGGTTGC
CAAGGAGTGC TGATTGATAA GCTCTACATT TCTTCACCAA AACTGAGCCC CAACACCGAT GGAATCCATG TAGAAAACTC
CAAAGATGTG GGGATTTACA ACTCCATGAT AAGCAATGGT GACGATTGCA TTTCAGTTGG ACCCGGTTCC TCAAACGTGG
ATATAGCAGG TTTAACTTGT GGTCCTAGCC ACGGGATTAG CATTGGAAGT CTTGGAGTGC ACAACTCTCA GGCATGTGTG
TCAAACCTGA CAGTCCGTGA CAGCATCATA AGAGAATCAG ACAACGGACT AAGAATCAAG ACATGGCAAG GGGGAATGGG
ATCAGTGACA GGTCTGAGAT TTGATAGCAT CCAAATGGAA AACGTTGGGA ACTGCATCAT CATCGATCAA TACTACTGTT
TGTCAAAGGA ATGCCTAAAC CAGAGTTCAG CTGTGCACGT GAATGATGTG TCGTACAGCA ACATAAAGGG CACCTATGAT
GTGAGAACAG CTCCTATTCA CTTTGCTTGC AGTGACAGTG TTGCTTGCAC AAACATCACT CTGTCTGAGG TTGAGCTTTT
GCCATTCGAA GGAGCATTGC TTGATGACCC CTTTTGCTGG AATGCTTATG GGACACAGGA GACCTTGACT ATACCTCCAA
TCAATTGCTT AAGGGAAGGT GACCCTGAGA CAGTGGGCGA TCTTTCTGAA TATCAATGCA GTTAAACCAG ACATGTTACT
TATATCAAAT ATATATATAT ATAAGGTGGC TTATAGATAC AAGATATTAG ATGAAATATA TATGATATAT GATATACTAT
ACATATATGA TAGAACATTA TTATGTTGAT GATGGTTCTC TGTGATAATC TTTTAGGATT CGTCCCTATC TGGGTACATT
ATTCCCATTT TGTGCGATGA GATGCAGAAA TTGGTCTCTT TTGGGGCCTA CACTCTGTAA TAGCTTCATT CAACATTTAT
ATATTACTAC ACCTTAATCT TCTTTTTGTG GTTGTAAAAA TATTTTCATG CAAAGGTAAA CATAATCTTC T

>Vigan.01G179300.01
ATGGATCTCA CAGTTCGTGT ATGTTCTACT CTATGGATCA TTGTGACCCT TTTGAACCAT AATTTTGGAA ATGTGGAGGG
AAGATACCAC CATCACAGCA AGCAGAGGAG AGTTTCTTCT GTTCCTACTG CTCCTTCTGA TTCTTCCACT GAGCCAGAGA
ACCCAAACCC TTCAGTTCCA CCCCCTGCTG ATTCTCCCAC CGTTCCTTCT GACCCTTATC CAAATGATAA CCAAACCTCC
TCTTCTGACT GTGTTTTTGA TGTGAGATCC TTTGGGGCAG TTGGAGATGG TTGTGCTGAT GACACACCTG CATTCAGGGC
AGCATGGAAA GCAGCATGTG CTGTGGAGTC TGGAATTCTT CTTGCTCCAG AAGACTACAT CTTTAAGATC ACTTCCACTA
TTTTTTCAGG TCCATGCAAG CCAGGATTGG TATTCCAAGT GGATGGAACA CTGATGGCAC CAGATGGACC AAATTCATGG
CCAGAAAAAG ATAGTAGAAA CCAATGGCTT GTATTTTACC GACTTGACCA AATGACTCTA AATGGTACTG GAACAATAGA
AGGGAATGGA GACAAATGGT GGGATCTCCC TTGCAAACCT CACAGGGGTC CCAATGGAAA AACTTTGTCA GGACCATGTG
GTAGTCCAGC TATGATACGA TTCTTCATGA GCTCCAATTT GAAGGTGAAT GGGCTTAAAA TCCAAAACAG TCCTCAGTTT
CACATGAAGT TTGATGGTTG CCAAGGAGTG CTGATTGATA AGCTCTACAT TTCTTCACCA AAACTGAGCC CCAACACCGA
TGGAATCCAT GTAGAAAACT CCAAAGATGT GGGGATTTAC AACTCCATGA TAAGCAATGG TGACGATTGC ATTTCAGTTG
GACCCGGTTC CTCAAACGTG GATATAGCAG GTTTAACTTG TGGTCCTAGC CACGGGATTA GCATTGGAAG TCTTGGAGTG
CACAACTCTC AGGCATGTGT GTCAAACCTG ACAGTCCGTG ACAGCATCAT AAGAGAATCA GACAACGGAC TAAGAATCAA
GACATGGCAA GGGGGAATGG GATCAGTGAC AGGTCTGAGA TTTGATAGCA TCCAAATGGA AAACGTTGGG AACTGCATCA
TCATCGATCA ATACTACTGT TTGTCAAAGG AATGCCTAAA CCAGAGTTCA GCTGTGCACG TGAATGATGT GTCGTACAGC
AACATAAAGG GCACCTATGA TGTGAGAACA GCTCCTATTC ACTTTGCTTG CAGTGACAGT GTTGCTTGCA CAAACATCAC
TCTGTCTGAG GTTGAGCTTT TGCCATTCGA AGGAGCATTG CTTGATGACC CCTTTTGCTG GAATGCTTAT GGGACACAGG
AGACCTTGAC TATACCTCCA ATCAATTGCT TAAGGGAAGG TGACCCTGAG ACAGTGGGCG ATCTTTCTGA ATATCAATGC
AGTTAA

>Vigan.01G179300.01
MDLTVRVCST LWIIVTLLNH NFGNVEGRYH HHSKQRRVSS VPTAPSDSST EPENPNPSVP PPADSPTVPS DPYPNDNQTS
SSDCVFDVRS FGAVGDGCAD DTPAFRAAWK AACAVESGIL LAPEDYIFKI TSTIFSGPCK PGLVFQVDGT LMAPDGPNSW
PEKDSRNQWL VFYRLDQMTL NGTGTIEGNG DKWWDLPCKP HRGPNGKTLS GPCGSPAMIR FFMSSNLKVN GLKIQNSPQF
HMKFDGCQGV LIDKLYISSP KLSPNTDGIH VENSKDVGIY NSMISNGDDC ISVGPGSSNV DIAGLTCGPS HGISIGSLGV
HNSQACVSNL TVRDSIIRES DNGLRIKTWQ GGMGSVTGLR FDSIQMENVG NCIIIDQYYC LSKECLNQSS AVHVNDVSYS
NIKGTYDVRT APIHFACSDS VACTNITLSE VELLPFEGAL LDDPFCWNAY GTQETLTIPP INCLREGDPE TVGDLSEYQC
S*