GBrowse Details

Vigan.01G147600.01

Basic Information:
Name: Vigan.01G147600.01
Multiple alignment
Variant Information
Position: Chr01:15793612..15798223 (+ strand)
Length: 4612
Functional Information:
Description: Similar to Vacuole. [XP_007042836.1, Theobroma cacao]
InterPro: Golgi apparatus membrane protein TVP15 (IPR013714)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.37,13.82,5.14,3.07,3.52,6.72,2.81,4.23
Arabidopsis thaliana homolog: AT4G33625.1
Structure :
Position: Chr01:15793612..15794026 (+ strand)
Length: 415
Type: five_prime_UTR
Position: Chr01:15794027..15794317 (+ strand)
Length: 291
Type: CDS
Position: Chr01:15794394..15794489 (+ strand)
Length: 96
Type: CDS
Position: Chr01:15794599..15794639 (+ strand)
Length: 41
Type: CDS
Position: Chr01:15795509..15795626 (+ strand)
Length: 118
Type: CDS
Position: Chr01:15797039..15797119 (+ strand)
Length: 81
Type: CDS
Position: Chr01:15797892..15797948 (+ strand)
Length: 57
Type: CDS
Position: Chr01:15797949..15798223 (+ strand)
Length: 275
Type: three_prime_UTR

>Vigan.01G147600.01 class=Sequence position=Chr01:15793612..15798223 (+ strand)
ATCTAACAAG AACCATATAT TATTATTGTT TTAAAGTATA GTTACAAGAC TCTCGCAATC CATTTTTGAC ACACTAGATG
CAAGACAAAA GCCGTTAGAC GTAGTATACG GAAAATGATA CTTGAACAAC CATTTTTGAC AACATTTAGA CACGCGCACA
CGTGTCTAAA TTTGAGTGGT CCAGTTGGAA AAATTAAATG AAAATGGACC ACTCAAATTT AGACACGTGT GCGCGTGTCT
AAATGTTGTC AAAAATGGTT GTTCAAGTGT CATTTTCCGT AGTATAAAGG TAGAACATAC TTTTGTTTTT CCCAAACTTT
TAATTTGTTA ACAAGTGTAC ATAGTGATTG TTTTTTCATT AGGAGACGTA ATTAAGTGTT AATCCCAATG TTTGAATCGC
CACGTGTTCC TCTTGATGTG GAAGAAGCAG AGAAAAGCAA AAGCAAAAGC AAATCAAAAA CAGATTCCAT ACCCGTTTTC
AACTCCACCC TTCTGTCTGT TGCCTCCGAT AACGAACTCC CACTGTTCCA CAAAAATGTC CCGAAACGGC GACGTAGAGG
AAGAGAGCGT CGTCACTAGA ACAAACAGAC CAGACCCTTT CTTGGTAGCA TGCCGCTGCT TCAGCTTCCT CACCTCGCTC
GCCGCCATTC TCTGCATCGC CGTCAATGTT CTCTCCGCCG TCCGTTCCTT CAAACACGCA TCCGACGTAA CACCTCTTCT
CTCTCTCAAT TTTATTCTTC GCTTCTCACT TTCCGTTACC TTCTTACACG AGCGCGTTTC AGATTTTCGA CGGCATATTC
CGCTGTTACG CTGTTATCAT AGCGGCTTTT GTGGTCCTCG CTGAGACCGA ATGGAGTTTC ATCCTCAAGT TCTCTAAGGT
TCCGTTTGAC CATCATTCTT GCGGTTATTC GATTAGTTGT TAACACTCTT GTGTTGTTAC GCGGTGCATG CTCTGTTGTG
ATCTAATTGA ACGGTGGTCC TTTTTAGGTT TTGGAGTATT GGGCTGCCAG GGGTATGCTG CAGATCTTGT GCGTGTTCCT
TTCGATTTAC TCACATTTAT TATACCTTAT GCTCTTTAAC TTGACTTACC TGTGCTTATT AAATCATTTG ATCTCATATC
ATGTCATAAA ATATGTTTAT AGTACTTCCT AGCATTCATA ATTTTTTAAT ACGCCTCTGT TGACCATTTC CTTAATCTTT
GGGTTCATTT GTTTGATATG TAATAAAGAA GCATGTGAGA AAAAACATAG ATGCAAATAA AGAAGGTATA TGAAAATATG
GAAGAAATAG AACGAAATTA AAGTGTTTGA TTTAGAGAAA CCGGTAAGAA ATGAAGAAGA GTTAAACGAG TGAATAGACA
TAATTGATAA ATAAGATGAA AATAATTGGT GAGTTCCATA CTTTTTTGTT TAAAATTTTA CCGTCTCATT TTCTTTCTTC
TAAGCACTTT CACCTTTTAG TTTTTACTCT ATTTCTCTTT CACCAAAGAG AGGTAAATGA TGTTTCGTCA AAGAATAGGT
GCACACCTTG TTAAATACCC TTTATACTAA AAGACACGTG TTGAATCACT TTTATATTTT GGATCACTGA ATGCCTTTTT
CTGTAATATT GTTTTTGTTT CTTGTCCTTG GTCTATGGTT AGCAAAGCCA TCTTCAGTAT TAGATGTTTA GCTGTAAAGT
TTAAGCTGCA ATAATGATAT TTAAGTGCAC TTTGTTGGAG GAATGGAATA GTGTCCATTA GGAAATGTCA GTGGTATGTT
GTTGACTAGG AAGTAGTATT TAGAATAGAG TAAACTGTTG TGAGAGTAGC TAGCACTAGT ACTCACCGTG ATTTTTATTT
TCTTCGTCAT GATAGACTTT GTGGCTTGGT TTCTGAATAG TGGTTTTATT TGTGCAGTGT TGCTGTCATG ACAAGGGCTT
TTCCTGACAT TACTGGGGAG CGAAGGAACC TTTTTCTTCT TCAGAGCATA GCAAGTTATT TGCTACTTGG CTGTGGCGTT
ATTTATGTTG TTTCAGTAAG AGATCATTGA AGAGAAATAA TATATTTAGT CATATAATTT GTTTATTACT TCAATTTAGT
GTTATGCATA AAAAAAGTAT GGTTATAGTT ATTGGTGTTA GTTTTATAGG CTTAGTTCAA GATAGGGTGA ACTGAACTAT
CTCACTAATT CTTTAAATTT CAGAATTTGG TTACTTTAAA TTAATGCACA CAACGTTTAA GAGTGAGTTA GTTTAGGTTG
GGTTGGGTAG GGTTTAATCA TAAATGAAAC TCAACCCAAT CTAACTGAGT TGGATTGGGT CGAGTTGGGT CATCGGTAAC
CCGGCTCAAG GAACACCCCT AGAGAGAGTG AATGATCAAG ACATTAAATT TTTATACTAG TTCATTTTAT AGTAAGAACT
ACATCCAATT GCTCAACCAT ACCAACTAAG CTCATAATAA AATATCAGAG TTTTTACAAA CACAACCAAA TACTTACATT
AATGTTCTAA TCAACACTAA AGAACCTAAA ATACTTCTAG GTCTTCATGA ATCTTCAAAA TCTTCATGGG AATGGTTGGA
TTCATAAATG GTTGGATTCA TCAAATATAT GAAACATTAG CTTCAACACT TGGCAATGCT AGTACAAAAT TATTATTTTT
CATTTTTATG TAAGTTTGTT AACATAAATA TTTGTAATTC TTCAGTTGAC TTGGAAAAGT ATTGGGTAGT CTATATAGTA
TTATCAGAGT GAGGTCATAC GAGTTAAACA TTTCCTTTTC TTTCTGTTCT ATTTTTTCCT AAATACTTTT TATTCTCGGA
TATCTTGAGC TTGCTTGTAG TTCTGTTGCC AAGTAGACTA CGTGTTTTAT TTCAGTTCCT ACTCTTTACT ATGATTTTCC
TCAATGAACC TTGTAATAAT AAATATTTTC TCCTTGGAAA GGGAAATTGA TAGAGAAAAT TGGCATTCTT TTTTTGCTTT
CATTAGGTTA ATTTCTTCTC TCTTCAATGA TGGCATGCTT TGCATGATTG GGAAAACCTG CATACTATCG TACTGTAGAG
ATGTAAGATG AATGAATATC ATCACAATCT GAATAAGCCG TTGGCATTTT CAGATTCCCT AAGACTATGT GAACTGTGAC
TATATGATTT GAAAATATTG TGTAAAGTAT AGTACGTACT CAAAACTTCA GACATATAAT TCATGGGAGG TTTGCATGTT
AGATTGTTAT AGTCATATTG CAATAGGGAA GTTTCCTTTT CATGTCCATT ATCATTGGTG GGATTGATAC AAAGATCAAT
AGCTTTGGCT TGTTTTTCAA TCTTACGTCT CAACTGAGGT TTTAGACTTA TTTTTATCCA TAAATTTTTA TCTGCTTCTG
ATCTTACCAA AATTTATTTT TTATTAATCT TAATATCATT TTTTTTTAAT TTCTCTTCTT AATGAAGGGT ATCATGTGCA
TTGGTTTTCT TAAACGTGCC CGCCAGAAAC AGGAGATTAC AAGAGAGCAA GCAACCAAGG ATCTCGAGGT ATGCTTCTAT
TTTCAGATGT TACAATTTAA TCTGATTCAT ATATATTATA TGCGGTTACA TAGTTACGAT GACACACTCT TCCCGTCGTA
CAATGGTTGT CATTTTAGCC ATTTAAAGCA GTTTCAAATT GACTAATGTT TTCACCTTAT ACTTGTCCTC AAATTAATGT
CTCTCTATCA TTAAGTAACG CATTTATTTC AATAAATTTT TAGAAAGTGG CATATCTATT GTTTTCCTTA ATCTATATGA
AAAAACCTTA AATTGTAGTC ATTGTAAGAT GAAGAGAGTG ATGAAGTTCT GATTTTGACC TGATGCTGAT CTTGATAACA
TGCTTTGCAT GATTGGGAAA ACTGACAACT GACGTGCTAT ACAAATCTAA GATGGATTAA TCATATCAAA ATCTGAATAT
GCTGTTGGCA GCTTCCGTTA CACTGAATAG TGACTATATG ATTTGAAAAT ACTGTGTAAT GTTTAAGGTT TTTTTCATAT
AGATTAAGAA AATACCTACT CAACTTCAAA TATTCATGGG AGGCTTGCAT CTTTGCATGT TAGATCATTG TAGCCAGATT
GCACTAGCGC TTTCTCCTCC TTTTAATGTC CATGATCATT AGTGGAGATT GGATACAAAG ATCAATAACT TAGGCTTGTT
TTCAGTCTTA AGTCCTAACT GGGAGGATTG AGACTTTTAT TTCTGAGTAA ATTATGAAAA TTTGATTTTT TATTACCAAG
AAAACCTGCT GTATTTACTT GTTTTTATGG ATACATGCAG GAATTGGAAC GGCGCAGGGA AGAACTTGAA CAACTACTCC
TTTCCGAAAG AGTTTAAAGC ATTTTAAAGT TGTGGTGAGC TGATATAAAT CGGTAGTGAT GATTAATCTA CGGCAAACCA
ATGAACCTCT GTTTATCAGT ATTGTTTACA AAATTGTTTG TTCATTCTTT GTAACCGAGT TATATTCTTA GATATAGGCT
TATTAAAGGT GGGCTGTTGG CATATTCTTT GTAAATATAT AAAGCAGTAT TTAAAATTGT CTCAGTTTTT ATAGAGACTT
GAATCCAATT ATAACTGACG ATATATAATA AACTCTCCAC TTTGTTAGAG CA

>Vigan.01G147600.01
ATCTAACAAG AACCATATAT TATTATTGTT TTAAAGTATA GTTACAAGAC TCTCGCAATC CATTTTTGAC ACACTAGATG
CAAGACAAAA GCCGTTAGAC GTAGTATACG GAAAATGATA CTTGAACAAC CATTTTTGAC AACATTTAGA CACGCGCACA
CGTGTCTAAA TTTGAGTGGT CCAGTTGGAA AAATTAAATG AAAATGGACC ACTCAAATTT AGACACGTGT GCGCGTGTCT
AAATGTTGTC AAAAATGGTT GTTCAAGTGT CATTTTCCGT AGTATAAAGG TAGAACATAC TTTTGTTTTT CCCAAACTTT
TAATTTGTTA ACAAGTGTAC ATAGTGATTG TTTTTTCATT AGGAGACGTA ATTAAGTGTT AATCCCAATG TTTGAATCGC
CACGTGTTCC TCTTGATGTG GAAGAAGCAG AGAAAAGCAA AAGCAAAAGC AAATCAAAAA CAGATTCCAT ACCCGTTTTC
AACTCCACCC TTCTGTCTGT TGCCTCCGAT AACGAACTCC CACTGTTCCA CAAAAATGTC CCGAAACGGC GACGTAGAGG
AAGAGAGCGT CGTCACTAGA ACAAACAGAC CAGACCCTTT CTTGGTAGCA TGCCGCTGCT TCAGCTTCCT CACCTCGCTC
GCCGCCATTC TCTGCATCGC CGTCAATGTT CTCTCCGCCG TCCGTTCCTT CAAACACGCA TCCGACATTT TCGACGGCAT
ATTCCGCTGT TACGCTGTTA TCATAGCGGC TTTTGTGGTC CTCGCTGAGA CCGAATGGAG TTTCATCCTC AAGTTCTCTA
AGGTTTTGGA GTATTGGGCT GCCAGGGGTA TGCTGCAGAT CTTTGTTGCT GTCATGACAA GGGCTTTTCC TGACATTACT
GGGGAGCGAA GGAACCTTTT TCTTCTTCAG AGCATAGCAA GTTATTTGCT ACTTGGCTGT GGCGTTATTT ATGTTGTTTC
AGGTATCATG TGCATTGGTT TTCTTAAACG TGCCCGCCAG AAACAGGAGA TTACAAGAGA GCAAGCAACC AAGGATCTCG
AGGAATTGGA ACGGCGCAGG GAAGAACTTG AACAACTACT CCTTTCCGAA AGAGTTTAAA GCATTTTAAA GTTGTGGTGA
GCTGATATAA ATCGGTAGTG ATGATTAATC TACGGCAAAC CAATGAACCT CTGTTTATCA GTATTGTTTA CAAAATTGTT
TGTTCATTCT TTGTAACCGA GTTATATTCT TAGATATAGG CTTATTAAAG GTGGGCTGTT GGCATATTCT TTGTAAATAT
ATAAAGCAGT ATTTAAAATT GTCTCAGTTT TTATAGAGAC TTGAATCCAA TTATAACTGA CGATATATAA TAAACTCTCC
ACTTTGTTAG AGCA

>Vigan.01G147600.01
ATGTGGAAGA AGCAGAGAAA AGCAAAAGCA AAAGCAAATC AAAAACAGAT TCCATACCCG TTTTCAACTC CACCCTTCTG
TCTGTTGCCT CCGATAACGA ACTCCCACTG TTCCACAAAA ATGTCCCGAA ACGGCGACGT AGAGGAAGAG AGCGTCGTCA
CTAGAACAAA CAGACCAGAC CCTTTCTTGG TAGCATGCCG CTGCTTCAGC TTCCTCACCT CGCTCGCCGC CATTCTCTGC
ATCGCCGTCA ATGTTCTCTC CGCCGTCCGT TCCTTCAAAC ACGCATCCGA CATTTTCGAC GGCATATTCC GCTGTTACGC
TGTTATCATA GCGGCTTTTG TGGTCCTCGC TGAGACCGAA TGGAGTTTCA TCCTCAAGTT CTCTAAGGTT TTGGAGTATT
GGGCTGCCAG GGGTATGCTG CAGATCTTTG TTGCTGTCAT GACAAGGGCT TTTCCTGACA TTACTGGGGA GCGAAGGAAC
CTTTTTCTTC TTCAGAGCAT AGCAAGTTAT TTGCTACTTG GCTGTGGCGT TATTTATGTT GTTTCAGGTA TCATGTGCAT
TGGTTTTCTT AAACGTGCCC GCCAGAAACA GGAGATTACA AGAGAGCAAG CAACCAAGGA TCTCGAGGAA TTGGAACGGC
GCAGGGAAGA ACTTGAACAA CTACTCCTTT CCGAAAGAGT TTAA

>Vigan.01G147600.01
MWKKQRKAKA KANQKQIPYP FSTPPFCLLP PITNSHCSTK MSRNGDVEEE SVVTRTNRPD PFLVACRCFS FLTSLAAILC
IAVNVLSAVR SFKHASDIFD GIFRCYAVII AAFVVLAETE WSFILKFSKV LEYWAARGML QIFVAVMTRA FPDITGERRN
LFLLQSIASY LLLGCGVIYV VSGIMCIGFL KRARQKQEIT REQATKDLEE LERRREELEQ LLLSERV*