GBrowse Details

Vigan.01G116800.01

Basic Information:
Name: Vigan.01G116800.01
Multiple alignment
Variant Information
Position: Chr01:11151132..11155524 (+ strand)
Length: 4393
Functional Information:
Description: Similar to constitutive photomorphogenesis protein 10-like. [XP_004504327.1, Cicer arietinum]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:39.95,30.14,20.62,29.23,22.76,29.36,21.88,16.98
Arabidopsis thaliana homolog: AT3G13550.1
Automatic updates:
Name: NM_001249342 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max constitutive photomorphogenesis protein 10 (COP10), mRNA.
PubMed ID: 11877375 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:11151132..11151336 (+ strand)
Length: 205
Type: five_prime_UTR
Position: Chr01:11151337..11151538 (+ strand)
Length: 202
Type: CDS
Position: Chr01:11151633..11151706 (+ strand)
Length: 74
Type: CDS
Position: Chr01:11154503..11154650 (+ strand)
Length: 148
Type: CDS
Position: Chr01:11155243..11155340 (+ strand)
Length: 98
Type: CDS
Position: Chr01:11155341..11155524 (+ strand)
Length: 184
Type: three_prime_UTR

>Vigan.01G116800.01 class=Sequence position=Chr01:11151132..11155524 (+ strand)
CTTGTTACAT TATTATGATA TAAAAGTATA GTAACTGGCA TCATATTAAT CCAAATAACA TTGGAGTTGA AATTCTTGAG
ATAAAAATGT AGTGCTAGTG GGAAGCAAAA GATGGGAGAG GATGAAATGA AACACTCTGG TCCTTGGTTG TGGAAAGTTT
GAAGAAGAAG AAAATTGTCG AGTTTGTTTG GGGTTTGAGA GATTGATGAT GATATCAGGA GGGGGAGGAA AATCATCGTG
GAGTTCTTCA ACATCGTCAT GGATACCCAC AACCTCCGTG TCGGCTTCAG GAAAGAGGAT TCAGAGGGAA ATGGTGGAAC
TCAACAACGA CCCTCCTCCC GATTGCTCCG CTGGCCCTAA GGGCGATAAC CTATATCACT GGATTGCCAC CATTATTGGA
ACCCCAGGTA GCTACACATT CCCAATTCTA TTTATTAACC CTATTACTGT CCTATCATCT TCTTAACTTT CATTTTTCCT
TTATCAACTT CTTCTCTTTA GGAACACCCT ACCAAGGTGG AATCTTTTTC CTTGACATCA AATTTCCTAG TGATTATCCC
TTCAAGCCTC CCCAGGTACA TTCTTCATGT TGCTTGCACC ATTCTTTTTT GTTTTCTACA AAGGAGTGAA CATGTACTTC
TTTTGAGTAA TCCGTTTCAT CTTTTTTAGT GTCAAAAATG TTTCAATTTC CCTTGTATTC CGCTATATGT GTTTGTTATT
TTGTTTTAGG GGTACGTATC TGCAAAGTTA ACTCTCTTTG AACTAGTGTT GTTTTCATTT TTCCTTATTC TTTTTCTTCT
AATTAAGAAA TTTAGCCAAA CAGCCGCATT AACCACTACC TGACTTATTA GTGTGACAAC TTATTATTTA GCGAGTGGTA
ACGTCTTTTT TCAGTTTTCT TTCTCATAAT TTAGTGTTTT GATTGGCGTT TGGAAGAATT TTGCTAGCCG TCTGCTGGAC
TGGATCTGAT AATTTTGTTG CTAGTTCTGA TAGAAGTGCT TCTATCCTTT ACTTTATAAG TTATGTTGTT ATACAACCAG
AAAAGTGTAT GAACTGGGTA AATAAAATGT CGACTATGTT CTAACTTTTT CCCTTTTGGA ACATGTGTTT TCTTTCTTTT
CATAAGTAAA GGTGAAAAAT TTGCATTATT GAACATGATA AAAAATAGGT TTAGGATTAA TCTCCTTACA CATAGGGTAC
TTTATTTATT ATAATAAAGA AAATATGAAT TAAACTCAAT CCTTGGATCA GAACTAGACT TTGGTACCAT GTTAAGAAAT
AAAGTTTAAA CCTAACTCAA TCCTATGGCT TGTAAGGTGA GGTTTGCATC CACTTATATA TTGTGCATTG ACCTTATTTC
TAGTTTATGT GGAACTTCCA ACAAATTTCC TCATGTCGAG GTATATACAT CTTGTGTGTG AGATTAAACA TTAATGGGTG
ATCCGATAGT GGGTGGAAGA ATAAACCAAA CAAACATCAA ATTTTGCTAG TATTAACTCT AAATTATGAT TCTGATACCA
TATTGAACAT AATGAAAAAT AGGTTTGAGA TTAATCTCCC TTGTGTAAAA AATACACATA TAGTACTTTA TTTATAATAA
AGGAAATATG GACTAAGTCC ATAATACAAA TAAAAAATAA TAACAAAGTA ACAGAAAATA AATTATTGAA GATAAAAGAT
AAATATAAGA TTTCTAAGAA TCTGAGATAT CTAACATGCA TGTAGTTGCA TGCGTGTGGG TGTGTATGAA TCTTTAGCCA
CTGGTTTTTA TTTTATCTTA AAAACTACAT CTCATAGGGT GTGTCTCTTT CTGATCATAA GATAACATGT GTAGTTTTTG
AAATATCTTT TCATTGAATT CCTTCCATTT TCACTTCTGT CAAGTTGGAT ATGTGGTTTT ATCTGTCATT GAATTAAGAA
CTCAAGGGGA TCCGCACGCA TTCATTTCTA CAATTACTAC AACAATGAGC CCAATCCGGA AAATGAAGCA TAATAAACTG
ATCATAGTAA TATTAGTTAC AATACCTATT ATCCAAAGAG TTTTGGTTCG GTCAACTCTT TAGTCGAGTT TATTGGCATG
CCTGCTAGGT GAATCAAGAA CCAGGAGGGC TAGAGATTGT CTGACAATGT AGTTAGTAAG CCAAAAGGAA GTAAGGGGTT
TAGATTGAGA CTAGGATTTT AGGTAGAAGA AAGGTTACTG TTGAGCTTAA ATGCGCATTC TGACATGTTG TATACACGCT
TGGCATGGAG CTGTATTTTA TACAATGACT GGATTGAATT CCTTGAAATC CATTCTAATT GTTGACCAGA ATAAAGTTGT
TTATGGATCA TGTTGATATT TATTATTAGG ATTAGTTGTG GATCAAGACA GGCTTTATCA ATTTGCACAT AGGTTGCACA
TTTGGACCAT GATTCCTCTC AATCATTTGA GTCATTCAAG CAGACAGTAC ATATGACTTA CTCCATCAGT CACTAGTTCG
GTTTTAAGGC GATGAACTTG TCTTTGTCTG ATATAACGTT CCGTATTGAG TATAGGTGCT CAATGTGGCA CTTGAGCCAT
GAGGCTCATT ACCCAACAAA CTAATTTTAT GGAATTCATG TGCAAGGGTG ACTTGAAAAG AAGCAGCTAG GGAAGTGCAT
ACATATACAT GTGCTTAAAG AGTTAGAATG AAAATCATTT AATGAGTGGT TGGGTACAGT GTTCTCTCAC TTAACAGAGC
AGTCTTTTGG GATGGGTTTT CTCATGGGCT TGAGTAGGAA ATCTTAAAGT CAAGACCGGG GTAGAGTGAC AATGTGTTTA
GATTGTTACA TTTGATTAAT CTTGTTTGTA GATGATTTTT GATATATAAA TCTTGATTGT CAGTTTAATT AATTCTTAAT
GATGTTCAAT ATATATATAA AGGTTTTTCA TTTGCTTGAA TGCACATATT TTTGGATTTT GATCTGGAAA ATGGAAAGTT
TGCTTTCTGG CTGTGCTGTT TTAGGGAGAC GACTGGGTCA GTGTGAACTT CCAGCTGCCT TCTGAATTCT AGTTTCTTAA
ATTGAAATTT GGAGCAGTTT ACTTTTTTTT TCTTCCTTTT TGAGTATGTC ACTGTTACCT CTTCTATTTT TGCAGTTTTT
AAAAGTATAT CACCTTTGTT TTGAAATCCT GCACAACCCT TCTGTGAAAT GTTCAAAATA TTTTATGAAC AGACTAAATT
ATCCTCCTTC TGTTTTTCTT GATTTTCATA AACTTCCCCT GATCAAGGAA GAGTGGTATT GGTTTTGGAA ACGAAGGAGC
GATATGCACA AACAAACCAC AAAATAATGT GTAGGGCTGT TGAAGTGATT TCAGTGTTTT ACTATTTTAA ATTAAAGAAA
TGAGATTGCA GGTGGTATTC AAAACACGCA TTTACCACTG CAATGTAGAC CCTGACGGCC TTGTAAGTAT GGGAATATTG
AAGGATGATT GGAGTCCAGC ACTAACAATT ACTAAGGTGC TACGAGAAGT TAGATCAATT TTCACAAATC CTGATCATTG
TAAGTTCTTC CAACTCCTTA AAATAAAATA CTTATTGATA TGACTATTTT GGTCATTGTA TTGTATTGTC TTCATTTTCA
ATTTTGTTTC TATAAATGGC GGTTGATGGT GGCTTGTATG TCAGTTCATT CTTCAACCTT GCCTTGTATT GGAGATGTAG
TACGTTGTAA CAGGGACACC AACTAATTTA TGTTTTTTGA CACTTGGGAT TCAACCAATT TAGAGGTTGC TTGATTTGAC
AATAGGATTT CTGCTTTCAT TTTTTGCTCT TACAAATAAT GACATGCATG TTACCTGGCT AATGCTTGGT TTCTTATTTT
TAAAGATTTA CCAAGAAACA ACTCCTTTTA ATCTGTTTTG TTTTCATGTT TCCCAAGTAT TTAAAAATGA GAAATTAAAG
TACTATAAAA ATAGAAAAGC TTTTTGTTCT CATCATATCA ACCATCTTAT CTCATACTTC TCTTCCTTAA TTGTTGTGGC
TGTAGAACTT TTGTTTCCAA ACATCTAATA TTAATAACGC CAACACTTTA CATCAGCATA CCAAGTAGGC ATTTATGATC
TTGGAGTGTA AAGTTGTAAT CTTTTTTGCA GATAATGCTG TTGTCCCTGG CATTGCTCAC TTGTATTCGG GAGACAGAGC
AAAACATGAT GGTATTGCTG CAGAGTGGAC TGTTCGATTT GCCAAGTGAA TGTAACTGTC CTTTTATTAA CTTACATCTT
ATGCAGTGTT CCAGTATTTA TGTAAATGAG AATGATAGTT TATAATTCAA TAGTAACTCC TACTTGCTCG TTCTTCAAGA
TAGTGCCTTA GTTGATTCTT CAATAATTGT ACCTGGATAA TGGTTATTTA TCATCACATG TTTTTAATTG TTT

>Vigan.01G116800.01
CTTGTTACAT TATTATGATA TAAAAGTATA GTAACTGGCA TCATATTAAT CCAAATAACA TTGGAGTTGA AATTCTTGAG
ATAAAAATGT AGTGCTAGTG GGAAGCAAAA GATGGGAGAG GATGAAATGA AACACTCTGG TCCTTGGTTG TGGAAAGTTT
GAAGAAGAAG AAAATTGTCG AGTTTGTTTG GGGTTTGAGA GATTGATGAT GATATCAGGA GGGGGAGGAA AATCATCGTG
GAGTTCTTCA ACATCGTCAT GGATACCCAC AACCTCCGTG TCGGCTTCAG GAAAGAGGAT TCAGAGGGAA ATGGTGGAAC
TCAACAACGA CCCTCCTCCC GATTGCTCCG CTGGCCCTAA GGGCGATAAC CTATATCACT GGATTGCCAC CATTATTGGA
ACCCCAGGAA CACCCTACCA AGGTGGAATC TTTTTCCTTG ACATCAAATT TCCTAGTGAT TATCCCTTCA AGCCTCCCCA
GGTGGTATTC AAAACACGCA TTTACCACTG CAATGTAGAC CCTGACGGCC TTGTAAGTAT GGGAATATTG AAGGATGATT
GGAGTCCAGC ACTAACAATT ACTAAGGTGC TACGAGAAGT TAGATCAATT TTCACAAATC CTGATCATTA TAATGCTGTT
GTCCCTGGCA TTGCTCACTT GTATTCGGGA GACAGAGCAA AACATGATGG TATTGCTGCA GAGTGGACTG TTCGATTTGC
CAAGTGAATG TAACTGTCCT TTTATTAACT TACATCTTAT GCAGTGTTCC AGTATTTATG TAAATGAGAA TGATAGTTTA
TAATTCAATA GTAACTCCTA CTTGCTCGTT CTTCAAGATA GTGCCTTAGT TGATTCTTCA ATAATTGTAC CTGGATAATG
GTTATTTATC ATCACATGTT TTTAATTGTT T

>Vigan.01G116800.01
ATGATGATAT CAGGAGGGGG AGGAAAATCA TCGTGGAGTT CTTCAACATC GTCATGGATA CCCACAACCT CCGTGTCGGC
TTCAGGAAAG AGGATTCAGA GGGAAATGGT GGAACTCAAC AACGACCCTC CTCCCGATTG CTCCGCTGGC CCTAAGGGCG
ATAACCTATA TCACTGGATT GCCACCATTA TTGGAACCCC AGGAACACCC TACCAAGGTG GAATCTTTTT CCTTGACATC
AAATTTCCTA GTGATTATCC CTTCAAGCCT CCCCAGGTGG TATTCAAAAC ACGCATTTAC CACTGCAATG TAGACCCTGA
CGGCCTTGTA AGTATGGGAA TATTGAAGGA TGATTGGAGT CCAGCACTAA CAATTACTAA GGTGCTACGA GAAGTTAGAT
CAATTTTCAC AAATCCTGAT CATTATAATG CTGTTGTCCC TGGCATTGCT CACTTGTATT CGGGAGACAG AGCAAAACAT
GATGGTATTG CTGCAGAGTG GACTGTTCGA TTTGCCAAGT GA

>Vigan.01G116800.01
MMISGGGGKS SWSSSTSSWI PTTSVSASGK RIQREMVELN NDPPPDCSAG PKGDNLYHWI ATIIGTPGTP YQGGIFFLDI
KFPSDYPFKP PQVVFKTRIY HCNVDPDGLV SMGILKDDWS PALTITKVLR EVRSIFTNPD HYNAVVPGIA HLYSGDRAKH
DGIAAEWTVR FAK*