GBrowse Details

Vigan.01G088600.01

Basic Information:
Name: Vigan.01G088600.01
Multiple alignment
Variant Information
Position: Chr01:7421066..7424606 (+ strand)
Length: 3541
Functional Information:
Description: Similar to Small GTP-binding protein. [Q39844, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:57.96,67.14,35.91,31.90,45.21,75.24,38.87,48.48
Automatic updates:
Name: NM_001317460 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ras-related protein Rab11A (LOC547878), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:7421066..7421396 (+ strand)
Length: 331
Type: five_prime_UTR
Position: Chr01:7421397..7421638 (+ strand)
Length: 242
Type: CDS
Position: Chr01:7423836..7424283 (+ strand)
Length: 448
Type: CDS
Position: Chr01:7424284..7424606 (+ strand)
Length: 323
Type: three_prime_UTR

>Vigan.01G088600.01 class=Sequence position=Chr01:7421066..7424606 (+ strand)
TTCCGCAACG CGTAAAATGG TGGTGGGATC AGAGGAAAGT AAGATAGAAG GAGCTGTCCT CAACAACCGT TTCACTCTTC
TTCAAACACT CTTTTATGAA ACCAAACCAA CTAACTTCTA ATTGGTGTGG GGAAACACGT CTCTACGCTT CCACCTCATT
CCAACACGTG TCACCTGACA CGTGTCCCTC CAAAAAATAC CAATAAATGT AAACGATGAA GAAATAAATT TCTCCTTTGA
TTGATGAAAA AAAAAAGGAA CAAAAAAGAT CGTCACCTTT TATTCGAGTT TTGAGGTGAA AGGGAAGGAG ACAGTTAGAA
AGAGAGTGGA AATGGCAGGT GCGGGTGCAG GAGGAGGGTA TGGGGACGCG AACCAGAGGA TAGATTACGT CTTCAAGGTG
GTGCTGATTG GTGACTCTGC GGTGGGGAAG TCACAGATTC TAGCGAGGTT TGCCAGGAAC GAGTTCAGCT TGGACTCAAA
GTCCACCATC GGTGTTGAAT TTCAGACGCG GACTTTGCTC ATCGATCACA AGACCGTTAA GGCTCAGATC TGGGACACGG
CTGGCCAAGA ACGGTACTCT AACTTCTCTT CCAGCTATCT CTTTTCCTTT TCCCTACTTT CTTCATTTTT AGCTTCGCTT
TCAATCTGTC ACCTGCACCA CCGCCTCGTT TCGCGCGTGA TCTCATCACC GCCGCCAGCG ATCCTCTATT AACTAAGCTT
ATCATCACGA TCAAGTTCTG GATTCGTGAT TGATGAGTGA CAGAAGCAGC AAAACGAATA GCACGCGGTA TTCCAGAGCA
TGTGCTAGGT TTAATAAGTA TCTGGAATTT ACCACGAAAC AAGGAAAACT GCTTATTCGA GAGAATTTGT GTTGTTGGAC
GAACACTTGA CATAACTCGT CACCGTGATT TTCGTTAATC ATAAAGAAAA CTTAATTTTC AATTTAGTTA ATTATATTAA
AATGTAAAAT ATAACCAAGA GTGTGTATTA ACTTGTGTGA AACATTATCA GTTAAACCGG TAGTTTGGAG TTATAGTTAT
GTTAGGCTAA CTTATGTTCG GAAAACCTTG ATATTGGGAT TGTAATTATG GTTACAATAG TAGCTGCGGT GTGGTCACCA
CTCTCGTTGA TACTGTCAAA AACTATGGAC AAATATTGTG ATATGGTTGC AAAGACCTGA AAATTCTTGA TTTTGTGGCT
AGATTTATAG TTTTGGTTGT GCATTAGAAT CAGTTATTTA TGTTGATGCT ATTGGTCGCC GAAATTGTGG GGTTGCTGTT
AGTTAATTAC CCCAGTGATT TTATTTCTTT TAAATTTGCA ACGGTATTTT TTTCGTGAAA AACTATTGTG GAACGAGTTT
ATGGCCACCA TGTCATAGTC TTGCAGCATT TGTTTTGTGA ATGTGTAGTT ATTATGCAAA ATTCAAAGCT ATATGTAATC
CTGGTAGATT TAGTTAAGTC TGCATTTCTC ATTGCTGCTT TTGTCTTTCT TCATTTTGGT CAATCGTCGC TGTTATGGTC
TAAGTATTGA TAAATTTATG GATCAACTTC ACCGGAATTG ATAGTTATGT TTGATTGATT GTTAGTTTCA TAAAGATGCT
GACTTTCTTC TTACTCCATT TCTAACATTT TATATTCTCG AACTATATAA AACCATAATT TTTTCTAAAG GAAAATGAAT
TCTGAATTTG GAACATATTT GGTATTATTG TGGGAGGGAT TCCAACTGAA TGGAGTGATT GTAGTGCATG AATTATTGCA
TAAGTTGTTT AATGTAATAC GATCTCATGT TTTACAGAGT TTAGAGAAAT ACGTTTGCTT AGATTTGTTT ATAAGACATA
GAAATAGAAT CTCGTTATAC TTCCCGCTCT CAACTAGTCA ACTAGATGTC AATATTCTCC ATTTATTGAG CTTTTACAAT
AACAACTGAT TTTTCCAATA TGAACTACAT CAAACCTCAG TTTTTAAACA TTGATATTTA CCACATACAT AAACACGGAA
GAACCGGCGA CAGACCATCC ATGGAAGTGG ATGCCAATGT TGTTGTAAAA TAAAGGGCTG CGAGTATATT GCAAAAGCTA
ACAAACAGTT AGTTGCAAAT TTTAAAACCC CTATTCTTGA TGTCGTGATT CATGGAAGCT ACGTCCGTGG AAGACCTTAG
TCCAACAGTT GTTGGATTCT TTTCTTCTTC TGCAAGTTGT GAACTTTGAG TTGTTGCTGG ATTTTTCTTC CAGCAAACCT
TGGGAATTTT GGACAATCAT GAACCACTCC GCTAATGCTT CCTTCAAAAT CACTCAACTC ATTTCTCTTC TATCTCTCCC
TCTCATAGCT CATTTCTTTT TTTCTTCTTC TAATATTCTG GGTATATTTA TTCTTTAAGA GTTTATCTTA TTAGATTCTA
AATATCTCAA AGAATGAGAA GTTTTTATTG TATCTTGATA GAATTGCACA ATACAGCAAC AAGTGTGTAC GCATCAGGAA
GTATTATTTT TTTCGTGATT TCGTCAGGTT TTTACAACAA ATGTTGGGTA CCGTATTACA TAAATTTTCC ACACTCTATA
AATTATACTG ACCAACATAT TTAGTTTGGA CATGTTTTCC TGTTTCTCAC ATATTTGTTA TGAAGCATGT AGATTAGAGA
TATATTTTCT TGCATGCAAA TTATATCTAT TTAGTGTTTC TTCTCGTTAT TTATTTATTG GTTGGAATGG TTGACTTACA
AGTACATCAA ATGTCAGTTT AGCCTCATAT ATGAATGGTT TATGATGCAG CTACAGAGCA GTTACAAGTG CATACTACAG
GGGTGCTGTG GGGGCAATGT TGGTTTATGA TATCACTAAA CGCCAAACCT TTGATCACAT ACCCCGGTGG TTAGAAGAGC
TGCGCAACCA TGCTGACAAG AACATAGTGA TAATTCTGAT AGGAAACAAA TGTGATCTTG AGAACCAGCG TGATGTACCC
ACCGAGGATG CAAAAGAATT TGCTGAGAAA GAAGGGTTGT TTTTCCTAGA GACCTCAGCA CTGGAAGCAA CTAATGTTGA
AACAGCCTTC GTAACTGTCT TGACAGAAAT ATACAACATC CTCAACAAGA AGAATCTAAC TGCTGATGAA AGTCAGGGAA
ATGGTAACTC CGCATCTTTG TCTGGCCAGA AGATTATCGT TCCAGGCCCT TCACAGGAAC TTCCTGCTAG GAGGAATATG
TGTTGTCAAG CATCTTGACT TATTTATAAT TAATTTCTAT AGTGTATCTC ATGCTTGTGT TCTTGTTACC AAATTTTAAA
GGTTTTGGCG CATTGCTTTT TGTACATTTA AATTTAATTT GTTTGGGTTG CCGAGTAAAC CACTAAAATG AACAATTGCG
TGGTTCAATA TATACGTGAT TTTTGTAGGT GAATTGGTGG AACTTGGAAC GTTCTCGCAC TTGATAATGT CATCACTCTT
GTTTGTAGTT TTGACATGGC TACATTTTGT TGGTACGGCA AAGCGATCAT GAGATACGTA TGTGCAGATA ATGGGTTTTT
CAATTATAGC TTCAACCGTC C

>Vigan.01G088600.01
TTCCGCAACG CGTAAAATGG TGGTGGGATC AGAGGAAAGT AAGATAGAAG GAGCTGTCCT CAACAACCGT TTCACTCTTC
TTCAAACACT CTTTTATGAA ACCAAACCAA CTAACTTCTA ATTGGTGTGG GGAAACACGT CTCTACGCTT CCACCTCATT
CCAACACGTG TCACCTGACA CGTGTCCCTC CAAAAAATAC CAATAAATGT AAACGATGAA GAAATAAATT TCTCCTTTGA
TTGATGAAAA AAAAAAGGAA CAAAAAAGAT CGTCACCTTT TATTCGAGTT TTGAGGTGAA AGGGAAGGAG ACAGTTAGAA
AGAGAGTGGA AATGGCAGGT GCGGGTGCAG GAGGAGGGTA TGGGGACGCG AACCAGAGGA TAGATTACGT CTTCAAGGTG
GTGCTGATTG GTGACTCTGC GGTGGGGAAG TCACAGATTC TAGCGAGGTT TGCCAGGAAC GAGTTCAGCT TGGACTCAAA
GTCCACCATC GGTGTTGAAT TTCAGACGCG GACTTTGCTC ATCGATCACA AGACCGTTAA GGCTCAGATC TGGGACACGG
CTGGCCAAGA ACGCTACAGA GCAGTTACAA GTGCATACTA CAGGGGTGCT GTGGGGGCAA TGTTGGTTTA TGATATCACT
AAACGCCAAA CCTTTGATCA CATACCCCGG TGGTTAGAAG AGCTGCGCAA CCATGCTGAC AAGAACATAG TGATAATTCT
GATAGGAAAC AAATGTGATC TTGAGAACCA GCGTGATGTA CCCACCGAGG ATGCAAAAGA ATTTGCTGAG AAAGAAGGGT
TGTTTTTCCT AGAGACCTCA GCACTGGAAG CAACTAATGT TGAAACAGCC TTCGTAACTG TCTTGACAGA AATATACAAC
ATCCTCAACA AGAAGAATCT AACTGCTGAT GAAAGTCAGG GAAATGGTAA CTCCGCATCT TTGTCTGGCC AGAAGATTAT
CGTTCCAGGC CCTTCACAGG AACTTCCTGC TAGGAGGAAT ATGTGTTGTC AAGCATCTTG ACTTATTTAT AATTAATTTC
TATAGTGTAT CTCATGCTTG TGTTCTTGTT ACCAAATTTT AAAGGTTTTG GCGCATTGCT TTTTGTACAT TTAAATTTAA
TTTGTTTGGG TTGCCGAGTA AACCACTAAA ATGAACAATT GCGTGGTTCA ATATATACGT GATTTTTGTA GGTGAATTGG
TGGAACTTGG AACGTTCTCG CACTTGATAA TGTCATCACT CTTGTTTGTA GTTTTGACAT GGCTACATTT TGTTGGTACG
GCAAAGCGAT CATGAGATAC GTATGTGCAG ATAATGGGTT TTTCAATTAT AGCTTCAACC GTCC

>Vigan.01G088600.01
ATGGCAGGTG CGGGTGCAGG AGGAGGGTAT GGGGACGCGA ACCAGAGGAT AGATTACGTC TTCAAGGTGG TGCTGATTGG
TGACTCTGCG GTGGGGAAGT CACAGATTCT AGCGAGGTTT GCCAGGAACG AGTTCAGCTT GGACTCAAAG TCCACCATCG
GTGTTGAATT TCAGACGCGG ACTTTGCTCA TCGATCACAA GACCGTTAAG GCTCAGATCT GGGACACGGC TGGCCAAGAA
CGCTACAGAG CAGTTACAAG TGCATACTAC AGGGGTGCTG TGGGGGCAAT GTTGGTTTAT GATATCACTA AACGCCAAAC
CTTTGATCAC ATACCCCGGT GGTTAGAAGA GCTGCGCAAC CATGCTGACA AGAACATAGT GATAATTCTG ATAGGAAACA
AATGTGATCT TGAGAACCAG CGTGATGTAC CCACCGAGGA TGCAAAAGAA TTTGCTGAGA AAGAAGGGTT GTTTTTCCTA
GAGACCTCAG CACTGGAAGC AACTAATGTT GAAACAGCCT TCGTAACTGT CTTGACAGAA ATATACAACA TCCTCAACAA
GAAGAATCTA ACTGCTGATG AAAGTCAGGG AAATGGTAAC TCCGCATCTT TGTCTGGCCA GAAGATTATC GTTCCAGGCC
CTTCACAGGA ACTTCCTGCT AGGAGGAATA TGTGTTGTCA AGCATCTTGA 

>Vigan.01G088600.01
MAGAGAGGGY GDANQRIDYV FKVVLIGDSA VGKSQILARF ARNEFSLDSK STIGVEFQTR TLLIDHKTVK AQIWDTAGQE
RYRAVTSAYY RGAVGAMLVY DITKRQTFDH IPRWLEELRN HADKNIVIIL IGNKCDLENQ RDVPTEDAKE FAEKEGLFFL
ETSALEATNV ETAFVTVLTE IYNILNKKNL TADESQGNGN SASLSGQKII VPGPSQELPA RRNMCCQAS*