VIGGS:GBrowse

Vigan.01G026900.01

Basic Information:

Name:	Vigan.01G026900.01 Multiple alignment Variant Information
Position:	Chr01:1856060..1857848 (+ strand)
Length:	1789

Functional Information:

Description:	Similar to Cytoplasmic dynein light chain, putative. [B9RQL2, Ricinus communis]
GO:	Biological Process: microtubule-based process (GO:0007017)
GO:	Cellular Component: microtubule associated complex (GO:0005875)
InterPro:	Dynein light chain, type 1/2 (IPR001372)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.08,0.32,2.20,0.59,2.35,11.90,2.03,2.56

Automatic updates:

Name:	NM_001248781 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max dynein light chain 1-like (LOC100500277), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001351529 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max dynein light chain type 1-like protein (LOC100499739), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:1856060..1856359 (+ strand)
Length:	300
Type:	five_prime_UTR

Position:	Chr01:1856360..1856497 (+ strand)
Length:	138
Type:	CDS

Position:	Chr01:1856634..1856777 (+ strand)
Length:	144
Type:	CDS

Position:	Chr01:1856778..1857848 (+ strand)
Length:	1071
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.01G026900.01 class=Sequence position=Chr01:1856060..1857848 (+ strand)
ATTTTTTTGT ATTTTTGTTG GAGAGAGAGA GAGAGAGGAG CAGATGGAGA CAAGAGATAG GTGAAAATAA AGGTGGTGTA
AGGATACGTG TATGTTTTGA AGTAGTGTCA GCCCATCAAT AATAAGATCA CTCAAATCAG CAATGCTGTT GGAACCAAAG
CTGGATTAAG TTGGAACTGG GCCTTCTTCA TTCTTCTGTT CTGCTGCCAC AATCTCAGCC ATAGGTCACA GATTGTTACA
CTACAAAAAC CCTGTTACAA AGAAGAACAA CCGAGAAGAA CCATCATCAC TCAATTAAGG ATGTTGGAAG GCAAAGCTTT
GGTGAAAGAA ACAGACATGT CACCCAAGAT GCAGATCCAT GCCATGGCCG CTGCTTCTCA TGCCCTTGAT CTCTACGATG
TTTCTGATTG CATTTCTGTT GCTGCCCATA TCAAGAAGGT GCCTCTCTTT CATCTTTCTT TCCGTTTCTC ATATTTTCTC
TTCTCCAATC ATTTTATATC TCAAGACTAG TTTTTGTTCC GTGGGATGTT GTGTTATTTT GTATTGATTA TTTGTTTGTG
CGTTTGATTT TCAGGAATTT GATAGTGTGT ATGGGAATGG ATGGCAATGC GTGGTGGGAT CGAATTTTGG GTGCTATTTC
ACCCATTCAT CGGGGACTTT CATCTATTTT GCTCTGGAGA CTCTTAATTT TCTTATCTTT AAGGGGACAT CTTCTTGATT
TATGCTATGT ACAATCTGAG ATAGAATCCT GGGTTTGGTT ATGAGAGAAG GAATAGGTTT TTGATTCTTC ATCTGGTTAT
GGTTCCATGC AGTAGCAGAA TATTTGAGAT GCGAGAGCAT GGAACAAACT ATGTATGGAT GACTCATGAC ATGTCTCCAT
CATCTGGCCT CTCAAATCGA CCATTTCGAT CACTCTGGAT TCTCCTATGT AAATGCATGT ATCGCTCCAA CTATGATTAA
AATGCTGTCT CTGCTTTATG TAAAACAAAC AGAAATAAAA CTGTCTCAGC TTTATTATTT GTGGGAGAGT GCTTATGTTT
TGAACGAGTG TCCGTATATT TAGCAAATAA GAATATAAAG AGAAATGAAA AGTTTGTGAA AGGAAAAAGG TACTAAAATT
AGACAATAAT TTTTCCGAAT TATTTGAGTA AATATTTAAT TAAGCTAATA AATTGATCAC AAGGTCCTCA ATTAATCCAC
TTATAAGCAG GCTCTCTATT TTATTGACAA CCAGTTGAGC CTCGTCTGCA CAAAAGCCTG TTCTCCAACC AGTTTCCCAC
ATTCCATTTA TCTCTCGCTT GCACTTCATG TCTTTCTCCA TCATTGCAAA GGTGTCATTG TATGCAAAAT CTTCCTCTCT
ACAATCATAA TCTTCTCTGT AAAATTTCAG ATTCTCAATG CCATCACAGA TTTCTTCCAC CAACTTGCAT AAGGAGATGC
GTAATCTTGA GTTTCCCCCA CATGCCAGCA AGAGAGAACG AACGACTTCG GAGTCTTGAA GACTCTTACG TTCTGTCAGT
TCGTAAGCGC AATCCAAGTA AAGCCTCATG TTTGTAATGC TGTAAATGGT TTCATCCTTT TCTAGGGTGT TGTGACGATC
CACATCAAGA TTGAAGAGCT TCTTTGCATG TCCTATGAAT GATGGACTCG TTAGAAGAAA ATGTTTCAGC TCTGTCCCTT
CTCTGTCACC GTCGATGCTA TAAGCATTGA TATCATCATT TCTATGTTCA GATTTGAGCA GCGTAATGAC CTCATCGCCT
GAAGAACTCT TCCTCATCTT GCATTTTTC

[show][hide][copy]TRANSCRIPT

>Vigan.01G026900.01
ATTTTTTTGT ATTTTTGTTG GAGAGAGAGA GAGAGAGGAG CAGATGGAGA CAAGAGATAG GTGAAAATAA AGGTGGTGTA
AGGATACGTG TATGTTTTGA AGTAGTGTCA GCCCATCAAT AATAAGATCA CTCAAATCAG CAATGCTGTT GGAACCAAAG
CTGGATTAAG TTGGAACTGG GCCTTCTTCA TTCTTCTGTT CTGCTGCCAC AATCTCAGCC ATAGGTCACA GATTGTTACA
CTACAAAAAC CCTGTTACAA AGAAGAACAA CCGAGAAGAA CCATCATCAC TCAATTAAGG ATGTTGGAAG GCAAAGCTTT
GGTGAAAGAA ACAGACATGT CACCCAAGAT GCAGATCCAT GCCATGGCCG CTGCTTCTCA TGCCCTTGAT CTCTACGATG
TTTCTGATTG CATTTCTGTT GCTGCCCATA TCAAGAAGGA ATTTGATAGT GTGTATGGGA ATGGATGGCA ATGCGTGGTG
GGATCGAATT TTGGGTGCTA TTTCACCCAT TCATCGGGGA CTTTCATCTA TTTTGCTCTG GAGACTCTTA ATTTTCTTAT
CTTTAAGGGG ACATCTTCTT GATTTATGCT ATGTACAATC TGAGATAGAA TCCTGGGTTT GGTTATGAGA GAAGGAATAG
GTTTTTGATT CTTCATCTGG TTATGGTTCC ATGCAGTAGC AGAATATTTG AGATGCGAGA GCATGGAACA AACTATGTAT
GGATGACTCA TGACATGTCT CCATCATCTG GCCTCTCAAA TCGACCATTT CGATCACTCT GGATTCTCCT ATGTAAATGC
ATGTATCGCT CCAACTATGA TTAAAATGCT GTCTCTGCTT TATGTAAAAC AAACAGAAAT AAAACTGTCT CAGCTTTATT
ATTTGTGGGA GAGTGCTTAT GTTTTGAACG AGTGTCCGTA TATTTAGCAA ATAAGAATAT AAAGAGAAAT GAAAAGTTTG
TGAAAGGAAA AAGGTACTAA AATTAGACAA TAATTTTTCC GAATTATTTG AGTAAATATT TAATTAAGCT AATAAATTGA
TCACAAGGTC CTCAATTAAT CCACTTATAA GCAGGCTCTC TATTTTATTG ACAACCAGTT GAGCCTCGTC TGCACAAAAG
CCTGTTCTCC AACCAGTTTC CCACATTCCA TTTATCTCTC GCTTGCACTT CATGTCTTTC TCCATCATTG CAAAGGTGTC
ATTGTATGCA AAATCTTCCT CTCTACAATC ATAATCTTCT CTGTAAAATT TCAGATTCTC AATGCCATCA CAGATTTCTT
CCACCAACTT GCATAAGGAG ATGCGTAATC TTGAGTTTCC CCCACATGCC AGCAAGAGAG AACGAACGAC TTCGGAGTCT
TGAAGACTCT TACGTTCTGT CAGTTCGTAA GCGCAATCCA AGTAAAGCCT CATGTTTGTA ATGCTGTAAA TGGTTTCATC
CTTTTCTAGG GTGTTGTGAC GATCCACATC AAGATTGAAG AGCTTCTTTG CATGTCCTAT GAATGATGGA CTCGTTAGAA
GAAAATGTTT CAGCTCTGTC CCTTCTCTGT CACCGTCGAT GCTATAAGCA TTGATATCAT CATTTCTATG TTCAGATTTG
AGCAGCGTAA TGACCTCATC GCCTGAAGAA CTCTTCCTCA TCTTGCATTT TTC

[show][hide][copy]CDS

>Vigan.01G026900.01
ATGTTGGAAG GCAAAGCTTT GGTGAAAGAA ACAGACATGT CACCCAAGAT GCAGATCCAT GCCATGGCCG CTGCTTCTCA
TGCCCTTGAT CTCTACGATG TTTCTGATTG CATTTCTGTT GCTGCCCATA TCAAGAAGGA ATTTGATAGT GTGTATGGGA
ATGGATGGCA ATGCGTGGTG GGATCGAATT TTGGGTGCTA TTTCACCCAT TCATCGGGGA CTTTCATCTA TTTTGCTCTG
GAGACTCTTA ATTTTCTTAT CTTTAAGGGG ACATCTTCTT GA

[show][hide][copy]PROTEIN

>Vigan.01G026900.01
MLEGKALVKE TDMSPKMQIH AMAAASHALD LYDVSDCISV AAHIKKEFDS VYGNGWQCVV GSNFGCYFTH SSGTFIYFAL
ETLNFLIFKG TSS*