GBrowse Details

Vigan.01G015200.01

Basic Information:
Name: Vigan.01G015200.01
Multiple alignment
Variant Information
Position: Chr01:921789..924158 (- strand)
Length: 2370
Functional Information:
Description: Similar to Uncharacterized protein. [I1K5K3, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Cellular Component: small ribosomal subunit (GO:0015935)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S5 (IPR000851)
Ribosomal protein S5, C-terminal (IPR005324)
Ribosomal protein S5, eukaryotic/archaeal (IPR005711)
Ribosomal protein S5, N-terminal (IPR013810)
Double-stranded RNA-binding domain (IPR014720)
Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
Ribosomal protein S5, N-terminal, conserved site (IPR018192)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:35.77,102.39,42.65,25.42,70.66,116.61,57.88,40.08
Arabidopsis thaliana homolog: AT3G57490.1
Automatic updates:
Name: NM_001367946 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S2-like (LOC100784649), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:921789..922071 (- strand)
Length: 283
Type: three_prime_UTR
Position: Chr01:922072..922230 (- strand)
Length: 159
Type: CDS
Position: Chr01:923108..923764 (- strand)
Length: 657
Type: CDS
Position: Chr01:923765..924158 (- strand)
Length: 394
Type: five_prime_UTR

>Vigan.01G015200.01 class=Sequence position=Chr01:921789..924158 (- strand)
GTGTTAGTGT AACTAAACTT GGTAGTACGT CTATAAACAA TCTTGTAATT CTCCTTTTAT TTATTTTTTT CTTTCCCTTT
TCGGTTATTG TGAATTTGTG ATCTTATCAA GGACTTTTTA AGGCATTTTT CCTCTATTCA AGCTTGTATA ATCTTCTTCA
ATTGCTTTTT CTTCGTCTGT GTCCAATATT TGAAATAATA AGCCCAGAAA TAGTTGGGCC AGCCCATCAC ATCAAGTAAA
ACGAAAACCC TACGCTGACC CTTTCATTAT ATACTTAGAT ATATAGAACA ACACTCGAAC CAGAAACCCT ACAGAGAGAA
CCTTCTCCCA TTTTTCACAA GCGCAGTTAC ACCCTCACTC CTTCCCCTTC CCTCTCTCGT ACACCGCAAA CAACATGGCC
GAACGTGGAA GTGGAGACCG TGGTGGATTC GGTCGTGGCT TCGGCGGTCG CGGTCGCGGC GACAGGGGCC GTGGCGGACG
CCGTAGGGCC GGGCGCCGCG ATGAGGAGGA AAAATGGGTT CCTGTAACGA AACTTGGACG CCTCGTAAAG GATGGTAAAA
TCCGGAGCCT GGAACAGATC TACCTGCACT CACTCCCAAT TAAGGAGCAC CAAATAATCG ACACCCTCGT CGGTCCTACT
CTCAAAGACG AGGTCATGAA GATCATGCCT GTCCAGAAAC AGACTCGCGC CGGTCAGCGC ACGCGCTTCA AGGCCTTCGT
CGTCGTTGGT GACGGTAACG GCCACGTGGG TCTCGGTGTC AAGTGCAGCA AGGAAGTCGC CACCGCCATT CGTGGCGCCA
TTATCTTGGC TAAGCTATCT GTTATTCCCG TCAGGAGAGG GTATTGGGGA AACAAGATTG GAAAGCCCCA CACCGTTCCC
TGTAAGGTTA CCGGAAAGTG TGGTTCCGTC ACAGTTCGCA TGGTCCCTGC CCCTCGTGGG TCCGGTATCG TCGCTGCCAG
GGTCCCCAAA AAGGTATTGC AGTTCGCCGG TATCGATGAT GTTTTCACCT CCTCCAGAGG TTCAACCAAA ACCCTCGGAA
ACTTCGTCAA GGTTAACCCT TACCCTTATT ATATTTAGTT TTGTTTTTTT ATTGTTTGTT TCGTTTATTG GATAATGCTT
GATAACGATG ATTTATAATG GTTTTAACGA CTTCTCTCAA GTGTTTAAAT TTTACGAGCA ATTTATACAT GCTCCTTTTA
AAAGCCTTTG CCATGTTCAT TGCATTTGTA GGGTTTTTGT ATTCCAACCC TATGACCTTG TTTTTTTGTA ACTGGATGAT
GACATCGTTG AAGCTTAATT AATTGTATTG GTGGTTATTG TGTTTTGCTT ATTGGATCAA CTCTTGTAAT TGTGTATGAT
CTTACATTAC CCTTGGATGC ACGGAAATAC TATATGATTT ACTTTACATT TCTATTACGC GTTTGGTTGC TTTATGCTTA
ATTCTGGTTG TCTAATTTAG TACTACAAAT TGCTCTACGA AGACATATCA GTTCAGTGTA AAATTTAGTC AGTTTCTTTA
ATGAACTCAA TCAGTACTTT TACTTAATGG AAATAAGAGG AGAAAACCTA AGTGAATTAT TTTATATTTT ATGTTTAGTT
TATCAGTAAG CTAATATGTA AAATCTCTTT AGTAAGCTTC TTCGTAGATT GTTAACTTGT GTCGAGACTA ATTTGAACTA
AGTAGAGAAC TTTAATTAAT GTTACCTTTC CCATTGTTCT CCCTGAATGG GGTTATTATA AGTTTTTTGA AGTGGGGTAG
TATTTGTTTT TATTGCATCT GTCCCCATCC AATGTAGTAA CACCATTTTT AGTTTTTTAA ACCATTCGTA TGCATTTTGA
AATATTGAAT AACCAATAAG TAAATAGATC TGAGTCTTAG TTATTTGTTT ATTAGTCTGT TTTTCTAATT CCGGTTATCT
TTTTACAGGC CACTTTTGAT TGCCTGCTTA AAACCTACGG TTTTCTAACA CCCGAATTCT GGAAGGAAAC TCGCTTCTCT
AAATCACCAT TCCAAGAATA CACAGATCTA TTGGCAAAGC CAACAGGAAA GGCCCTTATC CTGGAAGAGG AAAGAGTTGA
AGCTTGATGC TTGAGCTAGC AATTTTGAAG TTATCTGTTG ATGAGTGTTT TAAGTATTTT GCTAGGACCT AGTAATTATG
TTTTGCAGGT TTTTGTTATT TCCTTTATTA TTGAGGTTAT TGGTTTTGAC CCTGTTTCAA ATACCAAAAT CTTCATGGAT
TTATAAAACT TTCACGCTGT CCTAACTTAA TGGCAGATTT CATAATTGAA AGAAAAGTGT GATCTGGGTT TAAGTTCCCA
TGAGATTTGA TTAAACGCAT CTCTGAAATT AATACGATTT ATTTGTTGTA 

>Vigan.01G015200.01
GTGTTAGTGT AACTAAACTT GGTAGTACGT CTATAAACAA TCTTGTAATT CTCCTTTTAT TTATTTTTTT CTTTCCCTTT
TCGGTTATTG TGAATTTGTG ATCTTATCAA GGACTTTTTA AGGCATTTTT CCTCTATTCA AGCTTGTATA ATCTTCTTCA
ATTGCTTTTT CTTCGTCTGT GTCCAATATT TGAAATAATA AGCCCAGAAA TAGTTGGGCC AGCCCATCAC ATCAAGTAAA
ACGAAAACCC TACGCTGACC CTTTCATTAT ATACTTAGAT ATATAGAACA ACACTCGAAC CAGAAACCCT ACAGAGAGAA
CCTTCTCCCA TTTTTCACAA GCGCAGTTAC ACCCTCACTC CTTCCCCTTC CCTCTCTCGT ACACCGCAAA CAACATGGCC
GAACGTGGAA GTGGAGACCG TGGTGGATTC GGTCGTGGCT TCGGCGGTCG CGGTCGCGGC GACAGGGGCC GTGGCGGACG
CCGTAGGGCC GGGCGCCGCG ATGAGGAGGA AAAATGGGTT CCTGTAACGA AACTTGGACG CCTCGTAAAG GATGGTAAAA
TCCGGAGCCT GGAACAGATC TACCTGCACT CACTCCCAAT TAAGGAGCAC CAAATAATCG ACACCCTCGT CGGTCCTACT
CTCAAAGACG AGGTCATGAA GATCATGCCT GTCCAGAAAC AGACTCGCGC CGGTCAGCGC ACGCGCTTCA AGGCCTTCGT
CGTCGTTGGT GACGGTAACG GCCACGTGGG TCTCGGTGTC AAGTGCAGCA AGGAAGTCGC CACCGCCATT CGTGGCGCCA
TTATCTTGGC TAAGCTATCT GTTATTCCCG TCAGGAGAGG GTATTGGGGA AACAAGATTG GAAAGCCCCA CACCGTTCCC
TGTAAGGTTA CCGGAAAGTG TGGTTCCGTC ACAGTTCGCA TGGTCCCTGC CCCTCGTGGG TCCGGTATCG TCGCTGCCAG
GGTCCCCAAA AAGGTATTGC AGTTCGCCGG TATCGATGAT GTTTTCACCT CCTCCAGAGG TTCAACCAAA ACCCTCGGAA
ACTTCGTCAA GGCCACTTTT GATTGCCTGC TTAAAACCTA CGGTTTTCTA ACACCCGAAT TCTGGAAGGA AACTCGCTTC
TCTAAATCAC CATTCCAAGA ATACACAGAT CTATTGGCAA AGCCAACAGG AAAGGCCCTT ATCCTGGAAG AGGAAAGAGT
TGAAGCTTGA TGCTTGAGCT AGCAATTTTG AAGTTATCTG TTGATGAGTG TTTTAAGTAT TTTGCTAGGA CCTAGTAATT
ATGTTTTGCA GGTTTTTGTT ATTTCCTTTA TTATTGAGGT TATTGGTTTT GACCCTGTTT CAAATACCAA AATCTTCATG
GATTTATAAA ACTTTCACGC TGTCCTAACT TAATGGCAGA TTTCATAATT GAAAGAAAAG TGTGATCTGG GTTTAAGTTC
CCATGAGATT TGATTAAACG CATCTCTGAA ATTAATACGA TTTATTTGTT GTA

>Vigan.01G015200.01
ATGGCCGAAC GTGGAAGTGG AGACCGTGGT GGATTCGGTC GTGGCTTCGG CGGTCGCGGT CGCGGCGACA GGGGCCGTGG
CGGACGCCGT AGGGCCGGGC GCCGCGATGA GGAGGAAAAA TGGGTTCCTG TAACGAAACT TGGACGCCTC GTAAAGGATG
GTAAAATCCG GAGCCTGGAA CAGATCTACC TGCACTCACT CCCAATTAAG GAGCACCAAA TAATCGACAC CCTCGTCGGT
CCTACTCTCA AAGACGAGGT CATGAAGATC ATGCCTGTCC AGAAACAGAC TCGCGCCGGT CAGCGCACGC GCTTCAAGGC
CTTCGTCGTC GTTGGTGACG GTAACGGCCA CGTGGGTCTC GGTGTCAAGT GCAGCAAGGA AGTCGCCACC GCCATTCGTG
GCGCCATTAT CTTGGCTAAG CTATCTGTTA TTCCCGTCAG GAGAGGGTAT TGGGGAAACA AGATTGGAAA GCCCCACACC
GTTCCCTGTA AGGTTACCGG AAAGTGTGGT TCCGTCACAG TTCGCATGGT CCCTGCCCCT CGTGGGTCCG GTATCGTCGC
TGCCAGGGTC CCCAAAAAGG TATTGCAGTT CGCCGGTATC GATGATGTTT TCACCTCCTC CAGAGGTTCA ACCAAAACCC
TCGGAAACTT CGTCAAGGCC ACTTTTGATT GCCTGCTTAA AACCTACGGT TTTCTAACAC CCGAATTCTG GAAGGAAACT
CGCTTCTCTA AATCACCATT CCAAGAATAC ACAGATCTAT TGGCAAAGCC AACAGGAAAG GCCCTTATCC TGGAAGAGGA
AAGAGTTGAA GCTTGA

>Vigan.01G015200.01
MAERGSGDRG GFGRGFGGRG RGDRGRGGRR RAGRRDEEEK WVPVTKLGRL VKDGKIRSLE QIYLHSLPIK EHQIIDTLVG
PTLKDEVMKI MPVQKQTRAG QRTRFKAFVV VGDGNGHVGL GVKCSKEVAT AIRGAIILAK LSVIPVRRGY WGNKIGKPHT
VPCKVTGKCG SVTVRMVPAP RGSGIVAARV PKKVLQFAGI DDVFTSSRGS TKTLGNFVKA TFDCLLKTYG FLTPEFWKET
RFSKSPFQEY TDLLAKPTGK ALILEEERVE A*