Variant information

Chr08:8386146 - 8390725

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 [SNPs] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
8386381TC552149.771.00NON_SYNONYMOUS_CODING(MISSENSE|gTt/gCt|V8A|None|Vigan.08G099700.01)Vigna nepalensis
8387326TC572256.771.00INTRON(|||None|Vigan.08G099700.01)Vigna nepalensis
8388213TG803174.771.00INTRON(|||None|Vigan.08G099700.01)Vigna nepalensis
8389004GT662769.771.00INTRON(|||None|Vigan.08G099700.01), UPSTREAM(|4559||None|Vigan.08G099800.01)Vigna nepalensis
8389783CT662705.771.00INTRON(|||None|Vigan.08G099700.01), UPSTREAM(|3780||None|Vigan.08G099800.01)Vigna nepalensis
8389866AT582308.771.00INTRON(|||None|Vigan.08G099700.01), UPSTREAM(|3697||None|Vigan.08G099800.01)Vigna nepalensis
8390428AC492151.771.00NON_SYNONYMOUS_CODING(MISSENSE|gAc/gCc|D428A|None|Vigan.08G099700.01), UPSTREAM(|3135||None|Vigan.08G099800.01)Vigna nepalensis
8390429CA482151.771.00NON_SYNONYMOUS_CODING(MISSENSE|gaC/gaA|D428E|None|Vigan.08G099700.01), UPSTREAM(|3134||None|Vigan.08G099800.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
8390724(AT)9(AT)6411809.731.00DOWNSTREAM(|0||None|Vigan.08G099700.01), INTERGENIC(||||), INTRAGENIC(|||None|), UPSTREAM(|2838||None|Vigan.08G099800.01), UTR_3_PRIME(|284||None|Vigan.08G099700.01)Vigna nepalensis