Variant information

Chr08:12263236 - 12268870

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12263261GA562242.771.00UPSTREAM(|3215||None|Vigan.08G138800.01), UTR_3_PRIME(|899||None|Vigan.08G138900.01)Vigna nepalensis
12263766AG602386.771.00UPSTREAM(|3720||None|Vigan.08G138800.01), UTR_3_PRIME(|394||None|Vigan.08G138900.01)Vigna nepalensis
12263858GA622422.771.00UPSTREAM(|3812||None|Vigan.08G138800.01), UTR_3_PRIME(|302||None|Vigan.08G138900.01)Vigna nepalensis
12263988AG672500.771.00UPSTREAM(|3942||None|Vigan.08G138800.01), UTR_3_PRIME(|172||None|Vigan.08G138900.01)Vigna nepalensis
12264025TC602388.771.00UPSTREAM(|3979||None|Vigan.08G138800.01), UTR_3_PRIME(|135||None|Vigan.08G138900.01)Vigna nepalensis
12264131TG572179.771.00UPSTREAM(|4085||None|Vigan.08G138800.01), UTR_3_PRIME(|29||None|Vigan.08G138900.01)Vigna nepalensis
12264171TG542419.771.00NON_SYNONYMOUS_CODING(MISSENSE|Att/Ctt|I469L|None|Vigan.08G138900.01), UPSTREAM(|4125||None|Vigan.08G138800.01)Vigna nepalensis
12264361TC562227.771.00INTRON(|||None|Vigan.08G138900.01), UPSTREAM(|4315||None|Vigan.08G138800.01)Vigna nepalensis
12264584GA521464.770.96INTRON(|||None|Vigan.08G138900.01), UPSTREAM(|4538||None|Vigan.08G138800.01)Vigna nepalensis
12264589TC522350.771.00INTRON(|||None|Vigan.08G138900.01), UPSTREAM(|4543||None|Vigan.08G138800.01)Vigna nepalensis
12264665CA441753.771.00INTRON(|||None|Vigan.08G138900.01), UPSTREAM(|4619||None|Vigan.08G138800.01)Vigna nepalensis
12264697AG351414.771.00INTRON(|||None|Vigan.08G138900.01), UPSTREAM(|4651||None|Vigan.08G138800.01)Vigna nepalensis
12264859CA471818.771.00INTRON(|||None|Vigan.08G138900.01), UPSTREAM(|4813||None|Vigan.08G138800.01)Vigna nepalensis
12264986GA773157.771.00INTRON(|||None|Vigan.08G138900.01), UPSTREAM(|4940||None|Vigan.08G138800.01)Vigna nepalensis
12265134GC462043.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12265137AG472045.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12265400TC552228.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12265422AG562267.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12265447CG501976.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12265542CG522084.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12265704GA632562.771.00NON_SYNONYMOUS_CODING(MISSENSE|aCa/aTa|T391I|None|Vigan.08G138900.01)Vigna nepalensis
12265957AC652628.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12266000CT592365.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12266172GC461777.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12266368AG552441.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12266597GA491808.771.00SYNONYMOUS_CODING(SILENT|ggC/ggT|G279|None|Vigan.08G138900.01)Vigna nepalensis
12266705AT401551.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12266971AC592297.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12267095CT572153.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12267198AG461854.771.00INTRON(|||None|Vigan.08G138900.01), SPLICE_SITE_REGION(|||None|Vigan.08G138900.01)Vigna nepalensis
12267300AC883470.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12267397AG582326.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12267443AG582595.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12267460AC592573.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12267962AG512100.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12267991CT612492.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12268487CA592633.771.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12263699ATA611940.731.00UPSTREAM(|3654||None|Vigan.08G138800.01), UTR_3_PRIME(|460||None|Vigan.08G138900.01)Vigna nepalensis
12263957TTCT662913.731.00UPSTREAM(|3912||None|Vigan.08G138800.01), UTR_3_PRIME(|201||None|Vigan.08G138900.01)Vigna nepalensis
12264172ATGTAACA552410.731.00CODON_CHANGE_PLUS_CODON_DELETION(|cagttacat/cat|QLH466H|None|Vigan.08G138900.01), UPSTREAM(|4127||None|Vigan.08G138800.01)Vigna nepalensis
12264889CTTGC492158.731.00INTRON(|||None|Vigan.08G138900.01), UPSTREAM(|4844||None|Vigan.08G138800.01)Vigna nepalensis
12265147TAGTACAAGACCACCCCCAACAT502213.731.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12266363CCA532392.731.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12266979AAGAAGTAGAATATG602954.731.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12267231TCT692318.731.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12268270TTA612407.731.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis
12268493ACCAAAAGA612626.731.00INTRON(|||None|Vigan.08G138900.01)Vigna nepalensis