Variant information

Chr06:35622159 - 35626576

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
35622196AC401609.771.00DOWNSTREAM(|4953||None|Vigan.06G225800.01), UTR_5_PRIME(|231||None|Vigan.06G225900.01)Vigna nepalensis
35622264AG441792.771.00UTR_5_PRIME(|163||None|Vigan.06G225900.01)Vigna nepalensis
35622482CG441814.771.00NON_SYNONYMOUS_CODING(MISSENSE|gCg/gGg|A19G|None|Vigan.06G225900.01)Vigna nepalensis
35622712CG351310.771.00NON_SYNONYMOUS_CODING(MISSENSE|Ctt/Gtt|L96V|None|Vigan.06G225900.01)Vigna nepalensis
35623062AG491794.771.00DOWNSTREAM(|4910||None|Vigan.06G226000.01), SYNONYMOUS_CODING(SILENT|ttA/ttG|L212|None|Vigan.06G225900.01)Vigna nepalensis
35623200GA271057.771.00DOWNSTREAM(|4772||None|Vigan.06G226000.01), SYNONYMOUS_CODING(SILENT|ctG/ctA|L258|None|Vigan.06G225900.01)Vigna nepalensis
35623392GC461830.771.00DOWNSTREAM(|4580||None|Vigan.06G226000.01), NON_SYNONYMOUS_CODING(MISSENSE|gaG/gaC|E322D|None|Vigan.06G225900.01)Vigna nepalensis
35623653TG491811.771.00DOWNSTREAM(|4319||None|Vigan.06G226000.01), NON_SYNONYMOUS_CODING(MISSENSE|gaT/gaG|D409E|None|Vigan.06G225900.01)Vigna nepalensis
35624025TA461839.771.00DOWNSTREAM(|3947||None|Vigan.06G226000.01), SYNONYMOUS_CODING(SILENT|ggT/ggA|G533|None|Vigan.06G225900.01)Vigna nepalensis
35624442GT391527.771.00DOWNSTREAM(|3530||None|Vigan.06G226000.01), SYNONYMOUS_CODING(SILENT|gtG/gtT|V672|None|Vigan.06G225900.01)Vigna nepalensis
35624835AG411535.771.00DOWNSTREAM(|3137||None|Vigan.06G226000.01), SYNONYMOUS_CODING(SILENT|ttA/ttG|L803|None|Vigan.06G225900.01)Vigna nepalensis
35625012CT361457.771.00DOWNSTREAM(|2960||None|Vigan.06G226000.01), SYNONYMOUS_CODING(SILENT|ccC/ccT|P862|None|Vigan.06G225900.01)Vigna nepalensis
35625110AT431742.771.00DOWNSTREAM(|2862||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625235GA462221.771.00DOWNSTREAM(|2737||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625250TA522356.771.00DOWNSTREAM(|2722||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625268CG512446.771.00DOWNSTREAM(|2704||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625354TC552482.771.00DOWNSTREAM(|2618||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625386TA462079.771.00DOWNSTREAM(|2586||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625387GA472079.771.00DOWNSTREAM(|2585||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625416GA482091.771.00DOWNSTREAM(|2556||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625421TC431947.771.00DOWNSTREAM(|2551||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625463GA482101.771.00DOWNSTREAM(|2509||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625475GC492307.771.00DOWNSTREAM(|2497||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625497TC522401.771.00DOWNSTREAM(|2475||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625499TC532356.771.00DOWNSTREAM(|2473||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625509CT472131.771.00DOWNSTREAM(|2463||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625575AG13646.771.00DOWNSTREAM(|2397||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625581GA11556.771.00DOWNSTREAM(|2391||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625601GA19826.771.00DOWNSTREAM(|2371||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625603TC19871.771.00DOWNSTREAM(|2369||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625612GC231051.771.00DOWNSTREAM(|2360||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625646GA291276.771.00DOWNSTREAM(|2326||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625650CT311338.771.00DOWNSTREAM(|2322||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625677CT281239.771.00DOWNSTREAM(|2295||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625682TG271317.771.00DOWNSTREAM(|2290||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625690CT281321.771.00DOWNSTREAM(|2282||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625694CT291366.771.00DOWNSTREAM(|2278||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625734GA431951.771.00DOWNSTREAM(|2238||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625764AT532385.771.00DOWNSTREAM(|2208||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625765AT542385.771.00DOWNSTREAM(|2207||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625792TC18826.771.00DOWNSTREAM(|2180||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625803AT281152.771.00DOWNSTREAM(|2169||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625837CT411590.771.00DOWNSTREAM(|2135||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625869CG431993.771.00DOWNSTREAM(|2103||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625876CG452124.771.00DOWNSTREAM(|2096||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625891AC542362.771.00DOWNSTREAM(|2081||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35626024GA602247.771.00DOWNSTREAM(|1948||None|Vigan.06G226000.01), SYNONYMOUS_CODING(SILENT|gaG/gaA|E913|None|Vigan.06G225900.01)Vigna nepalensis
35626154AG542053.771.00DOWNSTREAM(|1818||None|Vigan.06G226000.01), NON_SYNONYMOUS_CODING(MISSENSE|Att/Gtt|I957V|None|Vigan.06G225900.01)Vigna nepalensis
35626294CA652493.771.00DOWNSTREAM(|1678||None|Vigan.06G226000.01), UTR_3_PRIME(|9||None|Vigan.06G225900.01)Vigna nepalensis
35626431GC612460.771.00DOWNSTREAM(|1541||None|Vigan.06G226000.01), UTR_3_PRIME(|146||None|Vigan.06G225900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
35622438AAGT481925.730.94FRAME_SHIFT(|ata/GTata|I5V?|None|Vigan.06G225900.01)Vigna nepalensis
35622439AAG471925.730.94FRAME_SHIFT(|ata/aGta|I5S?|None|Vigan.06G225900.01)Vigna nepalensis
35625215TTAG512482.731.00DOWNSTREAM(|2756||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625227CCTACCGTACTACACTTTTATGTTAGGACA512932.731.00DOWNSTREAM(|2744||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625269TATTAGATTGT522437.731.00DOWNSTREAM(|2702||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625283ATTTTA522347.731.00DOWNSTREAM(|2688||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625288AAAATAGA522347.731.00DOWNSTREAM(|2683||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625304AAACA492446.731.00DOWNSTREAM(|2667||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625309TCTACTATGT492176.731.00DOWNSTREAM(|2662||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625343GTG502238.731.00DOWNSTREAM(|2628||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625360TCT542482.731.00DOWNSTREAM(|2611||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625566AAG231211.731.00DOWNSTREAM(|2405||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625567AAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG231211.731.00DOWNSTREAM(|2404||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625613TTAA231042.731.00DOWNSTREAM(|2358||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625622TTTGT241042.731.00DOWNSTREAM(|2349||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625628TCTCAT241087.731.00DOWNSTREAM(|2343||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625700AATTCTCTTCTTTC331672.731.00DOWNSTREAM(|2271||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625709CTC321537.731.00DOWNSTREAM(|2262||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625739AAC432032.731.00DOWNSTREAM(|2232||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis
35625802AAT241143.731.00DOWNSTREAM(|2169||None|Vigan.06G226000.01), INTRON(|||None|Vigan.06G225900.01)Vigna nepalensis