VIGGS:Variant information

Chr05:15658751 - 15664997

Filter

Species
- Vigna nepalensis
Effect
- INTRON
- UPSTREAM
- UTR_3_PRIME

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
15659050	G	C	53	2175.77	1.00	UPSTREAM(\|4120\|\|None\|Vigan.05G181800.01), UTR_3_PRIME(\|90\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15659545	C	T	47	1821.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4615\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15659635	T	C	49	1860.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4705\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15659709	A	T	35	1611.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4779\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15659737	G	A	38	1429.77	0.89	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4807\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15659750	G	A	42	1448.77	0.88	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4820\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15659805	G	A	44	1422.77	0.89	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4875\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15659862	C	T	54	2102.77	0.96	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4932\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15659885	A	G	48	2028.77	0.96	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4955\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15659953	T	C	36	1556.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15659970	A	G	36	1564.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15660001	T	C	31	1267.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15660038	G	A	39	1582.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15660073	G	A	41	1584.77	0.98	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15660258	C	T	67	2619.77	0.99	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15660493	T	C	55	2071.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15660943	C	T	66	2666.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15661284	A	G	54	2078.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15661421	T	C	59	2428.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15661953	T	C	50	2186.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15662242	C	G	46	1832.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15662384	A	T	54	2173.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15662484	T	G	83	3218.75	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15662569	G	A	78	3386.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15662614	C	T	69	2500.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15662750	C	T	56	2074.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15663091	G	A	54	2290.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15663166	A	G	65	2536.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15664470	A	G	62	2718.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4713\|\|None\|Vigan.05G182000.01)	Vigna nepalensis
15664476	A	G	59	2693.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4707\|\|None\|Vigan.05G182000.01)	Vigna nepalensis
15664494	G	A	48	2121.77	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4689\|\|None\|Vigan.05G182000.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
15658814	GA	G	77	2947.73	1.00	UPSTREAM(\|3885\|\|None\|Vigan.05G181800.01), UTR_3_PRIME(\|325\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15659706	A	ACAG	45	1690.73	0.98	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4777\|\|None\|Vigan.05G181800.01)	Vigna nepalensis
15661314	TAC	T	59	2533.73	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15661543	G	GTTT	26	1296.73	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15661959	C	CAT	47	2205.73	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15662548	GA	G	63	2889.73	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15664004	CT	C	63	2187.73	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01)	Vigna nepalensis
15664323	CA	C	49	1522.73	1.00	INTRON(\|\|\|None\|Vigan.05G181900.01), UPSTREAM(\|4859\|\|None\|Vigan.05G182000.01)	Vigna nepalensis