Variant information

Chr04:38502826 - 38508092

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
38502832GT622448.771.00DOWNSTREAM(|508||None|Vigan.04G264600.01), UPSTREAM(|2781||None|Vigan.04G264500.01), UTR_5_PRIME(|178||None|Vigan.04G264700.01)Vigna nepalensis
38503399GA572234.771.00DOWNSTREAM(|1075||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|3348||None|Vigan.04G264500.01)Vigna nepalensis
38503742AG481953.771.00DOWNSTREAM(|1418||None|Vigan.04G264600.01), SYNONYMOUS_CODING(SILENT|ggA/ggG|G68|None|Vigan.04G264700.01), UPSTREAM(|3691||None|Vigan.04G264500.01)Vigna nepalensis
38503971GC391485.771.00DOWNSTREAM(|1647||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|3920||None|Vigan.04G264500.01)Vigna nepalensis
38504502AC431763.771.00DOWNSTREAM(|2178||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|4451||None|Vigan.04G264500.01)Vigna nepalensis
38504861AC441726.771.00DOWNSTREAM(|2537||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|4810||None|Vigan.04G264500.01)Vigna nepalensis
38504994TA391720.771.00DOWNSTREAM(|2670||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|4943||None|Vigan.04G264500.01)Vigna nepalensis
38505094GC642514.771.00DOWNSTREAM(|2770||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505192CG642836.771.00DOWNSTREAM(|2868||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505245CT532089.771.00DOWNSTREAM(|2921||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505419AG492177.771.00DOWNSTREAM(|3095||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505431CT472129.771.00DOWNSTREAM(|3107||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505434TC462086.771.00DOWNSTREAM(|3110||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505514TC471857.771.00DOWNSTREAM(|3190||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505602AG371534.771.00DOWNSTREAM(|3278||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505675CT431886.771.00DOWNSTREAM(|3351||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505676TC421886.771.00DOWNSTREAM(|3352||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505681TC401944.771.00DOWNSTREAM(|3357||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505704CG431902.771.00DOWNSTREAM(|3380||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505747TC462100.771.00DOWNSTREAM(|3423||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505764TC512286.771.00DOWNSTREAM(|3440||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505801TC542516.771.00DOWNSTREAM(|3477||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505802CT562516.771.00DOWNSTREAM(|3478||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505807AG552581.771.00DOWNSTREAM(|3483||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505851TG492311.771.00DOWNSTREAM(|3527||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505853TC512350.771.00DOWNSTREAM(|3529||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505863GA502234.771.00DOWNSTREAM(|3539||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505914GA401568.771.00DOWNSTREAM(|3590||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505930TC381518.771.00DOWNSTREAM(|3606||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505943AG452006.771.00DOWNSTREAM(|3619||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505953AG462129.771.00DOWNSTREAM(|3629||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505988AG452052.771.00DOWNSTREAM(|3664||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505996CT431931.771.00DOWNSTREAM(|3672||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506082CT431927.771.00DOWNSTREAM(|3758||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506093GT421882.771.00DOWNSTREAM(|3769||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506142GA451978.771.00DOWNSTREAM(|3818||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506258TC341546.771.00DOWNSTREAM(|3934||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506259GA351546.771.00DOWNSTREAM(|3935||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506264GA341585.771.00DOWNSTREAM(|3940||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506471GA542491.771.00DOWNSTREAM(|4147||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506515AG612392.771.00DOWNSTREAM(|4191||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506554GA482081.771.00DOWNSTREAM(|4230||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506572AG451928.771.00DOWNSTREAM(|4248||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506602CT401762.771.00DOWNSTREAM(|4278||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506608AG391715.771.00DOWNSTREAM(|4284||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506660TC341377.771.00DOWNSTREAM(|4336||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506701TC341542.771.00DOWNSTREAM(|4377||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506717TG361605.771.00DOWNSTREAM(|4393||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506758AG481923.771.00DOWNSTREAM(|4434||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506829CT391475.771.00DOWNSTREAM(|4505||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506863CT371539.771.00DOWNSTREAM(|4539||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507170GA582319.771.00DOWNSTREAM(|4846||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507205CA572536.771.00DOWNSTREAM(|4881||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507206TC572536.771.00DOWNSTREAM(|4882||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507299TA612617.771.00DOWNSTREAM(|4975||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507308CT562456.771.00DOWNSTREAM(|4984||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507325GA582320.771.00INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507379GT491927.771.00INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507678AG512014.771.00UTR_3_PRIME(|1||None|Vigan.04G264700.01)Vigna nepalensis
38507736TC622811.771.00UTR_3_PRIME(|59||None|Vigan.04G264700.01)Vigna nepalensis
38507908GT532506.771.00UTR_3_PRIME(|231||None|Vigan.04G264700.01)Vigna nepalensis
38507930GT502236.771.00UTR_3_PRIME(|253||None|Vigan.04G264700.01)Vigna nepalensis
38508030CT682652.771.00UTR_3_PRIME(|353||None|Vigan.04G264700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
38503250AGTA622562.731.00DOWNSTREAM(|927||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|3200||None|Vigan.04G264500.01)Vigna nepalensis
38504279TCGTTGTGGT381666.731.00DOWNSTREAM(|1956||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|4229||None|Vigan.04G264500.01)Vigna nepalensis
38504933CATC251085.731.00DOWNSTREAM(|2610||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|4883||None|Vigan.04G264500.01)Vigna nepalensis
38504947AATAATACCATCTACAAGTGATAGATGTTAACTCTGTTCGTTGCATATAATGGATCATTCTGTTGGTCTGGGGGAATCCTAGGAATGT212244.731.00DOWNSTREAM(|2624||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|4897||None|Vigan.04G264500.01)Vigna nepalensis
38504982TTTTCT25332.70.88DOWNSTREAM(|2659||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|4932||None|Vigan.04G264500.01)Vigna nepalensis
38504992TTAA361744.731.00DOWNSTREAM(|2669||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01), UPSTREAM(|4942||None|Vigan.04G264500.01)Vigna nepalensis
38505111CCT441218.731.00DOWNSTREAM(|2788||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505214AAACTTAG683062.731.00DOWNSTREAM(|2891||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505290CTC36977.731.00DOWNSTREAM(|2967||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38505825TGT562527.731.00DOWNSTREAM(|3502||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506134GGC431925.731.00DOWNSTREAM(|3811||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506181TTTGAAGGTTGATCTAAACTTCTCAGGGC221429.731.00DOWNSTREAM(|3858||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506443TGAGTTGGCTTGGT522347.731.00DOWNSTREAM(|4120||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506480TTG542340.731.00DOWNSTREAM(|4157||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506895TGT401236.731.00DOWNSTREAM(|4572||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38506915AGGTTGA381661.731.00DOWNSTREAM(|4592||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507134TCT511628.731.00DOWNSTREAM(|4811||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507269ATATGGTGATA612678.731.00DOWNSTREAM(|4946||None|Vigan.04G264600.01), INTRON(|||None|Vigan.04G264700.01)Vigna nepalensis
38507718TTAT592573.731.00UTR_3_PRIME(|42||None|Vigan.04G264700.01)Vigna nepalensis
38507828TTAC602701.731.00UTR_3_PRIME(|152||None|Vigan.04G264700.01)Vigna nepalensis
38507829CTTC602701.731.00UTR_3_PRIME(|153||None|Vigan.04G264700.01)Vigna nepalensis
38508067CAAC602511.731.00UTR_3_PRIME(|391||None|Vigan.04G264700.01)Vigna nepalensis