Variant information

Chr04:26844577 - 26848310

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
26845031CT461771.771.00SYNONYMOUS_CODING(SILENT|ggG/ggA|G253|None|Vigan.04G185300.01), UPSTREAM(|311||None|Vigan.04G185400.01)Vigna nepalensis
26845329CG441677.771.00INTRON(|||None|Vigan.04G185300.01), UPSTREAM(|13||None|Vigan.04G185400.01)Vigna nepalensis
26845648CT582344.771.00INTRON(|||None|Vigan.04G185300.01), UTR_5_PRIME(|797||None|Vigan.04G185400.01)Vigna nepalensis
26845766GA602301.771.00INTRON(|||None|Vigan.04G185300.01), UTR_5_PRIME(|679||None|Vigan.04G185400.01)Vigna nepalensis
26845927GA592331.771.00INTRON(|||None|Vigan.04G185300.01), UTR_5_PRIME(|518||None|Vigan.04G185400.01)Vigna nepalensis
26846113AT572487.771.00INTRON(|||None|Vigan.04G185300.01), UTR_5_PRIME(|332||None|Vigan.04G185400.01)Vigna nepalensis
26846144GA642478.771.00INTRON(|||None|Vigan.04G185300.01), UTR_5_PRIME(|301||None|Vigan.04G185400.01)Vigna nepalensis
26846177AC682611.771.00INTRON(|||None|Vigan.04G185300.01), START_GAINED(|||None|Vigan.04G185400.01), UTR_5_PRIME(|268||None|Vigan.04G185400.01)Vigna nepalensis
26846304CG471945.771.00INTRON(|||None|Vigan.04G185300.01), UTR_5_PRIME(|141||None|Vigan.04G185400.01)Vigna nepalensis
26846853GA712793.771.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|187||None|Vigan.04G185400.01)Vigna nepalensis
26846935AG682725.771.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|269||None|Vigan.04G185400.01)Vigna nepalensis
26846973AG642819.771.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|307||None|Vigan.04G185400.01)Vigna nepalensis
26846982CA652853.771.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|316||None|Vigan.04G185400.01)Vigna nepalensis
26847127AT632440.771.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|461||None|Vigan.04G185400.01)Vigna nepalensis
26847196AG622548.771.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|530||None|Vigan.04G185400.01)Vigna nepalensis
26847263AG542045.771.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|597||None|Vigan.04G185400.01)Vigna nepalensis
26847464GA411619.771.00SYNONYMOUS_CODING(SILENT|ggC/ggT|G42|None|Vigan.04G185300.01), UTR_3_PRIME(|798||None|Vigan.04G185400.01)Vigna nepalensis
26847824AC491833.771.00INTRON(|||None|Vigan.04G185400.01), UTR_5_PRIME(|235||None|Vigan.04G185300.01)Vigna nepalensis
26848264GT682603.771.00UTR_3_PRIME(|1598||None|Vigan.04G185400.01), UTR_5_PRIME(|675||None|Vigan.04G185300.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
26844699AAAACA552403.731.00UPSTREAM(|642||None|Vigan.04G185400.01), UTR_3_PRIME(|310||None|Vigan.04G185300.01)Vigna nepalensis
26846105TAT532412.731.00INTRON(|||None|Vigan.04G185300.01), UTR_5_PRIME(|339||None|Vigan.04G185400.01)Vigna nepalensis
26847008GAG512320.731.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|343||None|Vigan.04G185400.01)Vigna nepalensis
26847026TTTAGAGCATCA612940.731.00INTRON(|||None|Vigan.04G185300.01), UTR_3_PRIME(|361||None|Vigan.04G185400.01)Vigna nepalensis
26847698AAG501675.731.00UTR_3_PRIME(|1033||None|Vigan.04G185400.01), UTR_5_PRIME(|110||None|Vigan.04G185300.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
26847606(AG)9(AG)628870.730.96UTR_3_PRIME(|941||None|Vigan.04G185400.01), UTR_5_PRIME(|18||None|Vigan.04G185300.01)Vigna nepalensis