Variant information

Chr04:15452149 - 15454926

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
15452279AT311175.771.00DOWNSTREAM(|2766||None|Vigan.04G129900.01), UTR_5_PRIME(|69||None|Vigan.04G129800.01)Vigna nepalensis
15452398AG281086.771.00DOWNSTREAM(|2647||None|Vigan.04G129900.01), SYNONYMOUS_CODING(SILENT|tcA/tcG|S17|None|Vigan.04G129800.01)Vigna nepalensis
15452413TA25955.771.00DOWNSTREAM(|2632||None|Vigan.04G129900.01), SYNONYMOUS_CODING(SILENT|ggT/ggA|G22|None|Vigan.04G129800.01)Vigna nepalensis
15452503GA441500.771.00DOWNSTREAM(|2542||None|Vigan.04G129900.01), SYNONYMOUS_CODING(SILENT|gcG/gcA|A52|None|Vigan.04G129800.01)Vigna nepalensis
15452611TG521876.771.00DOWNSTREAM(|2434||None|Vigan.04G129900.01), NON_SYNONYMOUS_CODING(MISSENSE|gaT/gaG|D88E|None|Vigan.04G129800.01)Vigna nepalensis
15452720AG662687.771.00DOWNSTREAM(|2325||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15452754TC773379.771.00DOWNSTREAM(|2291||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15452765GT783495.771.00DOWNSTREAM(|2280||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15453163AG612408.771.00DOWNSTREAM(|1882||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15453670CA582731.771.00DOWNSTREAM(|1375||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), SPLICE_SITE_REGION(|||None|Vigan.04G129800.01)Vigna nepalensis
15453724TC542150.771.00DOWNSTREAM(|1321||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15453884CG592264.771.00DOWNSTREAM(|1161||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15454310GC532105.771.00DOWNSTREAM(|735||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4847||None|Vigan.04G130000.01)Vigna nepalensis
15454342GT522431.771.00DOWNSTREAM(|703||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4815||None|Vigan.04G130000.01)Vigna nepalensis
15454357CA532401.771.00DOWNSTREAM(|688||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4800||None|Vigan.04G130000.01)Vigna nepalensis
15454373CA522235.771.00DOWNSTREAM(|672||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4784||None|Vigan.04G130000.01)Vigna nepalensis
15454476TC401560.771.00DOWNSTREAM(|569||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4681||None|Vigan.04G130000.01)Vigna nepalensis
15454589TG622371.771.00DOWNSTREAM(|456||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4568||None|Vigan.04G130000.01)Vigna nepalensis
15454609GA572101.771.00DOWNSTREAM(|436||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4548||None|Vigan.04G130000.01)Vigna nepalensis
15454625GA512017.771.00DOWNSTREAM(|420||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4532||None|Vigan.04G130000.01)Vigna nepalensis
15454652TG431868.771.00DOWNSTREAM(|393||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4505||None|Vigan.04G130000.01)Vigna nepalensis
15454660CT401837.771.00DOWNSTREAM(|385||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4497||None|Vigan.04G130000.01)Vigna nepalensis
15454709CT391763.771.00DOWNSTREAM(|336||None|Vigan.04G129900.01), NON_SYNONYMOUS_CODING(MISSENSE|Ctt/Ttt|L248F|None|Vigan.04G129800.01), UPSTREAM(|4448||None|Vigan.04G130000.01)Vigna nepalensis
15454711TG401763.771.00DOWNSTREAM(|334||None|Vigan.04G129900.01), SYNONYMOUS_CODING(SILENT|ctT/ctG|L248|None|Vigan.04G129800.01), UPSTREAM(|4446||None|Vigan.04G130000.01)Vigna nepalensis
15454758CA472057.771.00DOWNSTREAM(|287||None|Vigan.04G129900.01), UPSTREAM(|4399||None|Vigan.04G130000.01), UTR_3_PRIME(|23||None|Vigan.04G129800.01)Vigna nepalensis
15454765TG472068.771.00DOWNSTREAM(|280||None|Vigan.04G129900.01), UPSTREAM(|4392||None|Vigan.04G130000.01), UTR_3_PRIME(|30||None|Vigan.04G129800.01)Vigna nepalensis
15454803GA532107.771.00DOWNSTREAM(|242||None|Vigan.04G129900.01), UPSTREAM(|4354||None|Vigan.04G130000.01), UTR_3_PRIME(|68||None|Vigan.04G129800.01)Vigna nepalensis
15454857CG431822.771.00DOWNSTREAM(|188||None|Vigan.04G129900.01), UPSTREAM(|4300||None|Vigan.04G130000.01), UTR_3_PRIME(|122||None|Vigan.04G129800.01)Vigna nepalensis
15454908TC432012.771.00DOWNSTREAM(|137||None|Vigan.04G129900.01), UPSTREAM(|4249||None|Vigan.04G130000.01), UTR_3_PRIME(|173||None|Vigan.04G129800.01)Vigna nepalensis
15454925AG512354.771.00DOWNSTREAM(|120||None|Vigan.04G129900.01), UPSTREAM(|4232||None|Vigan.04G130000.01), UTR_3_PRIME(|190||None|Vigan.04G129800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
15452843CCTT552471.731.00DOWNSTREAM(|2201||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15452852GTTTTG582622.731.00DOWNSTREAM(|2192||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15452867TTAAAA542569.731.00DOWNSTREAM(|2177||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01)Vigna nepalensis
15453671AAATTAAT592722.731.00DOWNSTREAM(|1373||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), SPLICE_SITE_REGION(|||None|Vigan.04G129800.01)Vigna nepalensis
15454335TGT512332.731.00DOWNSTREAM(|709||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4821||None|Vigan.04G130000.01)Vigna nepalensis
15454665AAT341689.731.00DOWNSTREAM(|379||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4491||None|Vigan.04G130000.01)Vigna nepalensis
15454672TTTTATG311475.731.00DOWNSTREAM(|372||None|Vigan.04G129900.01), INTRON(|||None|Vigan.04G129800.01), UPSTREAM(|4484||None|Vigan.04G130000.01)Vigna nepalensis
15454835GGTGTAAGAACTTGTAGTCTGAGA432183.731.00DOWNSTREAM(|209||None|Vigan.04G129900.01), UPSTREAM(|4321||None|Vigan.04G130000.01), UTR_3_PRIME(|101||None|Vigan.04G129800.01)Vigna nepalensis