Variant information

Chr02:10118960 - 10123515

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
10119538TA511906.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10119620CG451709.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10120053TG501992.771.00INTRON(|||None|Vigan.02G119100.01), SPLICE_SITE_REGION(|||None|Vigan.02G119100.01)Vigna nepalensis
10120512TA602459.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10120672AT601990.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10120766GA662471.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10121065CT652478.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10121115CG602418.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10121564AG582437.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10121942GC411636.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10122203AG552211.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10122613GT652685.771.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10122862TC552133.771.00SYNONYMOUS_CODING(SILENT|gaA/gaG|E19|None|Vigan.02G119100.01)Vigna nepalensis
10123022CT682577.771.00UTR_5_PRIME(|104||None|Vigan.02G119100.01)Vigna nepalensis
10123381AG562143.770.98START_GAINED(|||None|Vigan.02G119100.01), UTR_5_PRIME(|463||None|Vigan.02G119100.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
10119395GGT651982.731.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10119649TTA401266.731.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10119899AATCTCTG452200.731.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10122436GGGATGTA622947.731.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis
10122590CCAT632455.731.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
10121462(AT)30(AT)9421745.731.00INTRON(|||None|Vigan.02G119100.01)Vigna nepalensis