Variant information

Chr01:55346814 - 55348266

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 [SNPs]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
55346942AC632443.771.00DOWNSTREAM(|2993||None|Vigan.01G418000.01), DOWNSTREAM(|3486||None|Vigan.01G417700.01), UPSTREAM(|3486||None|Vigan.01G417800.01), UTR_3_PRIME(|108||None|Vigan.01G417900.01)Vigna nepalensis
55347011CA622573.771.00DOWNSTREAM(|2924||None|Vigan.01G418000.01), DOWNSTREAM(|3555||None|Vigan.01G417700.01), UPSTREAM(|3555||None|Vigan.01G417800.01), UTR_3_PRIME(|39||None|Vigan.01G417900.01)Vigna nepalensis
55347065GA562199.771.00DOWNSTREAM(|2870||None|Vigan.01G418000.01), DOWNSTREAM(|3609||None|Vigan.01G417700.01), SYNONYMOUS_CODING(SILENT|tcC/tcT|S253|None|Vigan.01G417900.01), UPSTREAM(|3609||None|Vigan.01G417800.01)Vigna nepalensis
55347287AT672655.770.99DOWNSTREAM(|2648||None|Vigan.01G418000.01), DOWNSTREAM(|3831||None|Vigan.01G417700.01), DOWNSTREAM(|4858||None|Vigan.01G418100.01), INTRON(|||None|Vigan.01G417900.01), UPSTREAM(|3831||None|Vigan.01G417800.01)Vigna nepalensis
55347364AC702713.771.00DOWNSTREAM(|2571||None|Vigan.01G418000.01), DOWNSTREAM(|3908||None|Vigan.01G417700.01), DOWNSTREAM(|4781||None|Vigan.01G418100.01), INTRON(|||None|Vigan.01G417900.01), UPSTREAM(|3908||None|Vigan.01G417800.01)Vigna nepalensis
55347408CA672748.771.00DOWNSTREAM(|2527||None|Vigan.01G418000.01), DOWNSTREAM(|3952||None|Vigan.01G417700.01), DOWNSTREAM(|4737||None|Vigan.01G418100.01), INTRON(|||None|Vigan.01G417900.01), UPSTREAM(|3952||None|Vigan.01G417800.01)Vigna nepalensis
55347546GT743008.771.00DOWNSTREAM(|2389||None|Vigan.01G418000.01), DOWNSTREAM(|4090||None|Vigan.01G417700.01), DOWNSTREAM(|4599||None|Vigan.01G418100.01), INTRON(|||None|Vigan.01G417900.01), UPSTREAM(|4090||None|Vigan.01G417800.01)Vigna nepalensis
55347817AG592321.771.00DOWNSTREAM(|2118||None|Vigan.01G418000.01), DOWNSTREAM(|4328||None|Vigan.01G418100.01), DOWNSTREAM(|4361||None|Vigan.01G417700.01), SYNONYMOUS_CODING(SILENT|gaT/gaC|D149|None|Vigan.01G417900.01), UPSTREAM(|4361||None|Vigan.01G417800.01)Vigna nepalensis
55348037GT502071.771.00DOWNSTREAM(|1898||None|Vigan.01G418000.01), DOWNSTREAM(|4108||None|Vigan.01G418100.01), DOWNSTREAM(|4581||None|Vigan.01G417700.01), NON_SYNONYMOUS_CODING(MISSENSE|aCg/aAg|T76K|None|Vigan.01G417900.01), UPSTREAM(|4581||None|Vigan.01G417800.01)Vigna nepalensis
55348076CT582387.771.00DOWNSTREAM(|1859||None|Vigan.01G418000.01), DOWNSTREAM(|4069||None|Vigan.01G418100.01), DOWNSTREAM(|4620||None|Vigan.01G417700.01), NON_SYNONYMOUS_CODING(MISSENSE|cGt/cAt|R63H|None|Vigan.01G417900.01), UPSTREAM(|4620||None|Vigan.01G417800.01)Vigna nepalensis
55348175GA462036.771.00DOWNSTREAM(|1760||None|Vigan.01G418000.01), DOWNSTREAM(|3970||None|Vigan.01G418100.01), DOWNSTREAM(|4719||None|Vigan.01G417700.01), NON_SYNONYMOUS_CODING(MISSENSE|tCg/tTg|S30L|None|Vigan.01G417900.01), UPSTREAM(|4719||None|Vigan.01G417800.01)Vigna nepalensis
55348198AG482078.771.00DOWNSTREAM(|1737||None|Vigan.01G418000.01), DOWNSTREAM(|3947||None|Vigan.01G418100.01), DOWNSTREAM(|4742||None|Vigan.01G417700.01), SYNONYMOUS_CODING(SILENT|tcT/tcC|S22|None|Vigan.01G417900.01), UPSTREAM(|4742||None|Vigan.01G417800.01)Vigna nepalensis