GBrowse Details

Vigan.UMG068200.01

Basic Information:
Name: Vigan.UMG068200.01
Multiple alignment
Variant Information
Position: Scaffold_0171:36824..38924 (+ strand)
Length: 2101
Functional Information:
Description: Similar to Uncharacterized protein. [M5WJN3, Prunus persica]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Rad60/SUMO-like domain (IPR022617)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:350.03,297.82,92.08,118.35,159.41,19 5.41,185.32,94.34
Automatic updates:
Name: NM_001248279 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max small ubiquitin-like modifier (LOC100500241), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248279 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500241 (LOC100500241), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Scaffold_0171:36824..37021 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Scaffold_0171:37022..37111 (+ strand)
Length: 90
Type: CDS
Position: Scaffold_0171:38321..38470 (+ strand)
Length: 150
Type: CDS
Position: Scaffold_0171:38548..38607 (+ strand)
Length: 60
Type: CDS
Position: Scaffold_0171:38608..38924 (+ strand)
Length: 317
Type: three_prime_UTR

>Vigan.UMG068200.01 class=Sequence position=Scaffold_0171:36824..38924 (+ strand)
TAAGCATTGG GCTTATGGGT CCAAAGGCCC ATCAATCCGA TAGGCCCAGT AATGTCACAT GTTAAGGAAG GAATTTGAAC
GGTCCAAAGG GAATTGTATA AGAAACGTTT TTGCAATCTC AACGTCAAAG AGAGCGTAGA CGCAGCTGTT GTCGGCGGTA
ACCAAAGGAA GAAGAAGAGT TTGTCAGGAG AGTTAAAGAT GTCTGGTGTT GCCAACAACA ACAATAACGA GGAAGACAAG
AAGCCCAGCG AGCAAGGGGC ACACATCAAT CTTAAAGTCA AAGGGCAGGT TTGTATGATA TTTTCGTTTT CTCTATTTCT
AGGGTTTTTG TTTTCTTATG GATCGTGTGA ATTGCATGTC CTAGATCTTC GATTTTGTAC CCTGATTAGT TAGAGATCGT
TTGGCTGTGT TTACTGTATC ACGATATTGT GTCAAAGTAT GTCCTAATCT TTCTCTTTTT TACTGAATTG GGGTTTCATT
GTTGGGGATG ACTTTGTTTT TGTTTGTGAT TTCCTGCGTT GGTTAAAAAT TAAAACTTGA CGATTTTCTT TTAAAAGTTT
GGATTTGGGT TTACTTTATG TTTTTGTTTT TTTTTATTGT TGATCATGTT TTTGTTGTGA TGATTTATTT TCTTTAGTGT
TTGCTATCGG TTACGTGTTT CTGATGAAAT TCGCGCACTG GAAAATTGAT TTTTGATGAT CATGATAAAC TGATGATGAC
GTTATCTCGT GGAGTAAATT ATGTCAGGGT TTGACTTTGT TAATATTCCT GAAGGATTTC TGCTCTGTGA ATTTCGATGA
TGTTTTCCTG TCATTGATTT ATGGTTTTCG TTTACATTGT TTTTAATTTG TTTTTCTTCT ATTTTGGGGC CTTGGTATTT
GAATTTTCCG ATAGTATGTT TTGCATCTGA ATACATATTT TATCGAAGGA AATGGGTTTC GGTTTTCATC ATGCAAAGAA
ATTTGGGGCA AACTATTTAT CTGGGTTTTC TTGTTGTATA TCGTTTGTCC TCAAATCGAA TCGATTTCTC TGTCTGGTGG
TTTGATATTT ATCACAGGAT ACGCAAATCC AACTGTTACA ATGCTAAACT AAGGTTTCTC TTCTCTTATT TATGAATTTG
TATTTTGTTT CTTTTACAAC ATTTGATAAG CTGTTGCATG GATGCTCAAT CTGTTGTTGA TTATAGTGAT TTTTAACTGG
TTACAGTTTT GAAGATATAC ATCCATGGCC TAACAAAGAA AACGATGCCC AATTTAACAG TGTACATTTC ACTTTCTAAT
ATTCATTTAT TCTTGTTGAA TTGGTTATGA AAACTAATTG TATCCAATAA ACATACAGTG GATGGTGTTA GCGATTATTC
TTGGAAAATT GAATGTTACA GAGTGAAGTG AATTTGTTTT TAGTTTTCTT TGTTGGTGTC TTCCTGTAAC ATGTTTAAAC
ATATATCATC ACGTAAACAT CTTAAATTGA AGCTAATTTG TTAACTGGGT GTTGTAGGAT GGGAACGAAG TGTTCTTCAG
GATCAAGAGG AGCACTCAAT TGAAAAAACT TATGAATGCT TATTGTGACC GACAGTCGGT TGATTTCAAC TCCATTGCTT
TTCTCTTTGA TGGTCGCCGC CTTCGTGCTG AGCAGACTCC TGATGAGGTT TGTGTTTTCT TCTTTTTTGG TCATTTTCTT
ATCTCTGCCG ATTTTGGTTT TGACTTGTAC TTTTATTATT GCAGTTGGAA ATGGAGGATG GTGATGAAAT CGATGCCATG
CTTCATCAGA CTGGAGGCTT CTGAAGGGTT TCATCCTTAA GGAATTATAA GTAGAATTAG TTTAACATAG AGATCTAGGT
GAGACATAAG ATACATATTT TATTATCTCC TATACAGCTT TTGCTGCAGG ATCTTCAAGT CATTGTGGTG CTTCTTTTGT
CAATATCATT GTGGATGGAT TGTTTTATTT CTGCTTTGTT TATCTTGATT TGCATACCTT TCAGTGTTTC TTATATTTTT
CCATTTCTGA AGTTGAGTGC TGTTCCGATG TTCTCACTTA AAAGTGAATC ATACATCAAT AACATGTGAA TGGAATTGCG
AGTTATAGAT TTAGTTTTAT C

>Vigan.UMG068200.01
TAAGCATTGG GCTTATGGGT CCAAAGGCCC ATCAATCCGA TAGGCCCAGT AATGTCACAT GTTAAGGAAG GAATTTGAAC
GGTCCAAAGG GAATTGTATA AGAAACGTTT TTGCAATCTC AACGTCAAAG AGAGCGTAGA CGCAGCTGTT GTCGGCGGTA
ACCAAAGGAA GAAGAAGAGT TTGTCAGGAG AGTTAAAGAT GTCTGGTGTT GCCAACAACA ACAATAACGA GGAAGACAAG
AAGCCCAGCG AGCAAGGGGC ACACATCAAT CTTAAAGTCA AAGGGCAGGA TGGGAACGAA GTGTTCTTCA GGATCAAGAG
GAGCACTCAA TTGAAAAAAC TTATGAATGC TTATTGTGAC CGACAGTCGG TTGATTTCAA CTCCATTGCT TTTCTCTTTG
ATGGTCGCCG CCTTCGTGCT GAGCAGACTC CTGATGAGTT GGAAATGGAG GATGGTGATG AAATCGATGC CATGCTTCAT
CAGACTGGAG GCTTCTGAAG GGTTTCATCC TTAAGGAATT ATAAGTAGAA TTAGTTTAAC ATAGAGATCT AGGTGAGACA
TAAGATACAT ATTTTATTAT CTCCTATACA GCTTTTGCTG CAGGATCTTC AAGTCATTGT GGTGCTTCTT TTGTCAATAT
CATTGTGGAT GGATTGTTTT ATTTCTGCTT TGTTTATCTT GATTTGCATA CCTTTCAGTG TTTCTTATAT TTTTCCATTT
CTGAAGTTGA GTGCTGTTCC GATGTTCTCA CTTAAAAGTG AATCATACAT CAATAACATG TGAATGGAAT TGCGAGTTAT
AGATTTAGTT TTATC

>Vigan.UMG068200.01
ATGTCTGGTG TTGCCAACAA CAACAATAAC GAGGAAGACA AGAAGCCCAG CGAGCAAGGG GCACACATCA ATCTTAAAGT
CAAAGGGCAG GATGGGAACG AAGTGTTCTT CAGGATCAAG AGGAGCACTC AATTGAAAAA ACTTATGAAT GCTTATTGTG
ACCGACAGTC GGTTGATTTC AACTCCATTG CTTTTCTCTT TGATGGTCGC CGCCTTCGTG CTGAGCAGAC TCCTGATGAG
TTGGAAATGG AGGATGGTGA TGAAATCGAT GCCATGCTTC ATCAGACTGG AGGCTTCTGA 

>Vigan.UMG068200.01
MSGVANNNNN EEDKKPSEQG AHINLKVKGQ DGNEVFFRIK RSTQLKKLMN AYCDRQSVDF NSIAFLFDGR RLRAEQTPDE
LEMEDGDEID AMLHQTGGF*