GBrowse Details

Vigan.11G200200.01

Basic Information:
Name: Vigan.11G200200.01
Multiple alignment
Variant Information
Position: Chr11:32551839..32555309 (- strand)
Length: 3471
Functional Information:
Description: Similar to Uncharacterized protein. [I1L3L1, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Band 7 protein (IPR001107)
Stomatin family (IPR001972)
Hypersensitive-induced response protein (IPR028512)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:151.91,49.17,24.47,39.15,35.30,61.34,44.98,26.57
Arabidopsis thaliana homolog: AT5G51570.1
Automatic updates:
Name: NM_001254549 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max hypersensitive-induced response protein 4-like (HIR4), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:32551839..32552163 (- strand)
Length: 325
Type: three_prime_UTR
Position: Chr11:32552164..32552537 (- strand)
Length: 374
Type: CDS
Position: Chr11:32552733..32552829 (- strand)
Length: 97
Type: CDS
Position: Chr11:32554464..32554555 (- strand)
Length: 92
Type: CDS
Position: Chr11:32554655..32554775 (- strand)
Length: 121
Type: CDS
Position: Chr11:32554975..32555169 (- strand)
Length: 195
Type: CDS
Position: Chr11:32555170..32555309 (- strand)
Length: 140
Type: five_prime_UTR

>Vigan.11G200200.01 class=Sequence position=Chr11:32551839..32555309 (- strand)
CCAATTAACA TTTTTGTATT ACACGTTTAC TTTTCTTCTG AATATGGAAG TATATAACAT GTTTACTTCG AAGAAGATAT
TTTCGTTAAG GCAGTGTTGA TTTGTTGTTG TTCAGTGCTT TTGATTCTAC AGTAGCAAGG ATGGGAAACA CGTTCTGTTT
CTTCTGTGGA TGCGTTGCTC AATCGAGCGT CGGCGTCGTC GAACAGTGGG GTCGCTTCCA CCGCCTCGCG CAACCCGGTT
GCCACTTTTT CAACCCTCTC GCCGGCGAAT GCCTCGCCGG AATCCTCTCC ACCAGAATCT CCTCCCTCGA CGTCCGCATC
GAGACCAAAA CCAAGGTCCC CAATCAATTA CGTTTCAATT CCCAATTATT TTTATCTTTT TTTTTAATTT TGTCAGATTT
TATGTCACAA TCGTGTAATT TTTTTAATTT GTTGGCATGG TGTGTGATTT TTAGTTAGTG CAGACTATGA CCTATTAATG
ATAATGGAGA AAGGAGGCAT TGTGAGTGAT TTGTAATTTT GAATTGTGGG GCAGGACAAT GTGTTTGTGC AGTTGCTGTG
TTCAATTCAG TACCGAGTGA TTAAGGAAAA CGCGGATGAT GCTTTCTATG AATTGCAGAA TCCTCAGGAG CAGATCCAGG
CTTATGTTTT CGATGGTTGT GTTTGTTAAT GGTTATTTTT TTCTGCACAA TTGTGTGAAT TTTTATTTAT TTATTGTTTT
GACTGTTTGT TGTGTGGTTT GATTGGTGGT TCAGTGACAC GTGCTATTGT TCCGAGAATG AACTTGGATG AGCTCTTTGA
GCAGAAGGGC GAGGTTGCTA GAGCTGTCTT GGAGGAACTT GAAAAGGTAA CTTCTTTTTT GTAAGTAGTA GGTATTATTT
CGATAAACTT GCCCACGAAC ACTGGTATAA GAAGACTCGA ATTTAGAGTA AAATCTGTGA GCTATTGTTC TCAGTTGATG
TATTTTATAC ATATATAAGA AAGAGAAGAG TACAATAAAT GGAATAGCTT CAACCTATAA CACTCAATCC TAGGCTAGGT
ATATATACAA AAAATAAAAG CATATGATAC AATAAAATGA TAATCACAAT TCTAACGCTC CCCTCAAGCC AACTTGGAAT
ATTTAAACTA AATTATAGGT CCTCTCAAAG AAGTTAGAAT AGCGGTAAGC TGGTCATTAG ATCTCATAAA ACCAGTAATT
TCCTTGGACA ACAAACTTCT GGACAAAATT GCAATCAATC TCTTATGAAA CTGGAGGCAA TTGAAGGAAT ACCTTATTAT
CCCAATACAA CTTCACCTAC TCAACATCTC AAAATTTCAA CCCATGAAGG AGTTACTTAA TCCACTCAAG TTCAGAAATG
GCCAAAGCTA TAGATGTATA TTTAATTTTT CAGTGGATTG AGAAACAACA TTTTGTTAAG AGACAATATT TCCTCATGAA
GACACAGTAT TTTGTGGTGG ATCTCCTGTC AATGGGACAA CTAACTCAAT CTGCATTACA ATAACCTATA ATTTCAGTAT
ACCCCTTGTC CTCATATAAC AATCCTTGTT CTGGATTTTT TTTTATATAT TTGGGAATGT GAATTAGAAC ATCCCAATGG
TCAATGTAAA AATTTTGCAT TAATTGACAA CGTAATAGAT AGATAACTAA GTTCCTTCCG CTCCTTCCCA CCCGTACCCC
CCTCCCCCCC TGCAGCCTCT TATTGAGTCA CTTCAACACC CAACAAGTAT TTCAGATAGC CAAGATTTTT GGTCTAAACA
TGGCTAAATA AGTGCTCCTT TAGTTGAGAA ATCCTAGTGG TATCATTTCC TATAATAATT ATATTGTCAA CATAGACTAT
TAGATAAACA CACTTTCTGG GAGAAGGATA ACAATAGAAA ACTAAATGAT CTGTTCCAAT CCAAAAATCT ACATAGTATG
ACTAAATTTA GCTCTGGGAT AACTGCTTTA GTCCTTAGAG AGAGCAATGT AATTTACACA CTAGACCATA CTCCACTTGA
GCAACACATT CGGGACACAT GGAGTGAAAA TCGTAATTCG TGAGGAAAGA GACTTTACCG ACTGTGCAAG GATGTTGAAA
TTGAGAACCA AGGGCAAAAA CATGTCAGAA GACATCTATG AGGCAACCAC GATGGCCCAC TGTGATTCTG ACCATGGGAA
GGTGGCACAT GAGACACATT CGCTTGGTTT TTAATGGTGA CAGAGGTCAG TGCGTGGTGG CACATCTAGA GGCATGTGGT
CACGCAAACA CTGAAGTTCG GTTGTGCTCC TTAAGGTGCA CACAACTCTG ACTTTTCCAG ATGAATAAGA CAGCGAACAA
CAATAGTAGC AACCGGAGAC AGCAAACATC TAAGAAAGTT TTTATGTATA AGCATGTGTT TTGAAATATG ATAACTTGAT
AAGATTTTTC TTTGCTTGTC CGCTCATCCT TGATTAATTA TTTTTCTGAA TACCAATGGT CTTTATCTCC TGAATATCAG
GTGATGGGAG AGTATGGGTA TAATATAGAG CACATTCTCA TGGTTGATAT TATACCCGAT CCTTCTGTGC GTAAGGCAAT
GAATGAGATC AATGCAGGTA AAACAATGAA ATAAATTTCA TGGCTTTCAT TATTTTTCAT ATTTGTTTTA TCAATTAAAA
AAATGGAGCA TGATACCATT AATATTCTAT TCCATCCTTT TCCGCCAATC CAAGTATTAG TGGGTTAATT AAGATTATGA
TACGCTCAAT TCTACGCCAC GGTATTTAGC GAGGATGGAT TTTATTTGAC AGCTCAAAGG ATGCAACTTG CAAGTGAGTA
CAAAGGAGAA GCTGAAAAGA TATTGCTAGT TAAAAAGGCA GAAGCTGAAG CTGAGGCCAA GTATTTGGGT GGGGTTGGTG
TGGCTAGGCA ACGGCAAGCT ATTACAGATG GCTTGAGAGA GAACATCCTG AATTTCTCTC ACAAAGTAGA AGGCACTAAT
GCTAAGGAGG TGATGGATCT TATCATGATA ACTCAGTACT TTGACACAAT CAAAGACCTT GGGAATTCAT CAAAGAATAC
CACTGTTTTT ATACCCCACG GACCTGGCCA TGTTAGGGAT ATTGGAGAGC AGATACGCAA CGGACTGATG GAAGCAGCCA
GTGCTCAAGT AAATGTGGAG GAGTGATTTT GTAATATTGC CTTCGAAGGT ATAGCCCTTT ACAGTCACAC ACATAGTCCA
ATTATACTGG TATTACTCGT GTAATTAATA AGTGTCTGTT TAGTTTTGTG GAATAAAAGT TTTTGGTCAG CTGGATGTAA
AATCAGATGT TTTTCAGTCG TATTATGTAA AGTTTGCTGT CATGCTATAT TTTAGAAATT CGAAAGGTAA TATAGAACCG
AATTCATATG AATTAAATGA AATAGTTTGT GGCTTTCCTT TTTATGGAGT GTATAGGGTA AATTACCTTT TTGAAATATG
ACCTATTGTA ATTTTTATAT ATGAACATAT T

>Vigan.11G200200.01
CCAATTAACA TTTTTGTATT ACACGTTTAC TTTTCTTCTG AATATGGAAG TATATAACAT GTTTACTTCG AAGAAGATAT
TTTCGTTAAG GCAGTGTTGA TTTGTTGTTG TTCAGTGCTT TTGATTCTAC AGTAGCAAGG ATGGGAAACA CGTTCTGTTT
CTTCTGTGGA TGCGTTGCTC AATCGAGCGT CGGCGTCGTC GAACAGTGGG GTCGCTTCCA CCGCCTCGCG CAACCCGGTT
GCCACTTTTT CAACCCTCTC GCCGGCGAAT GCCTCGCCGG AATCCTCTCC ACCAGAATCT CCTCCCTCGA CGTCCGCATC
GAGACCAAAA CCAAGGACAA TGTGTTTGTG CAGTTGCTGT GTTCAATTCA GTACCGAGTG ATTAAGGAAA ACGCGGATGA
TGCTTTCTAT GAATTGCAGA ATCCTCAGGA GCAGATCCAG GCTTATGTTT TCGATGTGAC ACGTGCTATT GTTCCGAGAA
TGAACTTGGA TGAGCTCTTT GAGCAGAAGG GCGAGGTTGC TAGAGCTGTC TTGGAGGAAC TTGAAAAGGT GATGGGAGAG
TATGGGTATA ATATAGAGCA CATTCTCATG GTTGATATTA TACCCGATCC TTCTGTGCGT AAGGCAATGA ATGAGATCAA
TGCAGCTCAA AGGATGCAAC TTGCAAGTGA GTACAAAGGA GAAGCTGAAA AGATATTGCT AGTTAAAAAG GCAGAAGCTG
AAGCTGAGGC CAAGTATTTG GGTGGGGTTG GTGTGGCTAG GCAACGGCAA GCTATTACAG ATGGCTTGAG AGAGAACATC
CTGAATTTCT CTCACAAAGT AGAAGGCACT AATGCTAAGG AGGTGATGGA TCTTATCATG ATAACTCAGT ACTTTGACAC
AATCAAAGAC CTTGGGAATT CATCAAAGAA TACCACTGTT TTTATACCCC ACGGACCTGG CCATGTTAGG GATATTGGAG
AGCAGATACG CAACGGACTG ATGGAAGCAG CCAGTGCTCA AGTAAATGTG GAGGAGTGAT TTTGTAATAT TGCCTTCGAA
GGTATAGCCC TTTACAGTCA CACACATAGT CCAATTATAC TGGTATTACT CGTGTAATTA ATAAGTGTCT GTTTAGTTTT
GTGGAATAAA AGTTTTTGGT CAGCTGGATG TAAAATCAGA TGTTTTTCAG TCGTATTATG TAAAGTTTGC TGTCATGCTA
TATTTTAGAA ATTCGAAAGG TAATATAGAA CCGAATTCAT ATGAATTAAA TGAAATAGTT TGTGGCTTTC CTTTTTATGG
AGTGTATAGG GTAAATTACC TTTTTGAAAT ATGACCTATT GTAATTTTTA TATATGAACA TATT

>Vigan.11G200200.01
ATGGGAAACA CGTTCTGTTT CTTCTGTGGA TGCGTTGCTC AATCGAGCGT CGGCGTCGTC GAACAGTGGG GTCGCTTCCA
CCGCCTCGCG CAACCCGGTT GCCACTTTTT CAACCCTCTC GCCGGCGAAT GCCTCGCCGG AATCCTCTCC ACCAGAATCT
CCTCCCTCGA CGTCCGCATC GAGACCAAAA CCAAGGACAA TGTGTTTGTG CAGTTGCTGT GTTCAATTCA GTACCGAGTG
ATTAAGGAAA ACGCGGATGA TGCTTTCTAT GAATTGCAGA ATCCTCAGGA GCAGATCCAG GCTTATGTTT TCGATGTGAC
ACGTGCTATT GTTCCGAGAA TGAACTTGGA TGAGCTCTTT GAGCAGAAGG GCGAGGTTGC TAGAGCTGTC TTGGAGGAAC
TTGAAAAGGT GATGGGAGAG TATGGGTATA ATATAGAGCA CATTCTCATG GTTGATATTA TACCCGATCC TTCTGTGCGT
AAGGCAATGA ATGAGATCAA TGCAGCTCAA AGGATGCAAC TTGCAAGTGA GTACAAAGGA GAAGCTGAAA AGATATTGCT
AGTTAAAAAG GCAGAAGCTG AAGCTGAGGC CAAGTATTTG GGTGGGGTTG GTGTGGCTAG GCAACGGCAA GCTATTACAG
ATGGCTTGAG AGAGAACATC CTGAATTTCT CTCACAAAGT AGAAGGCACT AATGCTAAGG AGGTGATGGA TCTTATCATG
ATAACTCAGT ACTTTGACAC AATCAAAGAC CTTGGGAATT CATCAAAGAA TACCACTGTT TTTATACCCC ACGGACCTGG
CCATGTTAGG GATATTGGAG AGCAGATACG CAACGGACTG ATGGAAGCAG CCAGTGCTCA AGTAAATGTG GAGGAGTGA

>Vigan.11G200200.01
MGNTFCFFCG CVAQSSVGVV EQWGRFHRLA QPGCHFFNPL AGECLAGILS TRISSLDVRI ETKTKDNVFV QLLCSIQYRV
IKENADDAFY ELQNPQEQIQ AYVFDVTRAI VPRMNLDELF EQKGEVARAV LEELEKVMGE YGYNIEHILM VDIIPDPSVR
KAMNEINAAQ RMQLASEYKG EAEKILLVKK AEAEAEAKYL GGVGVARQRQ AITDGLRENI LNFSHKVEGT NAKEVMDLIM
ITQYFDTIKD LGNSSKNTTV FIPHGPGHVR DIGEQIRNGL MEAASAQVNV EE*