GBrowse Details

Vigan.11G193500.01

Basic Information:
Name: Vigan.11G193500.01
Multiple alignment
Variant Information
Position: Chr11:31733559..31735241 (- strand)
Length: 1683
Functional Information:
Description: Similar to ATP-dependent Clp protease ATP-binding subunit clpX. [XP_007038578.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.29,0.15,5.32,73.12,0.00,1.29,0.22,9.04
Arabidopsis thaliana homolog: AT5G62140.1
Automatic updates:
Name: BT091925 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-9K11 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:31733559..31733998 (- strand)
Length: 440
Type: three_prime_UTR
Position: Chr11:31733999..31734274 (- strand)
Length: 276
Type: CDS
Position: Chr11:31734706..31735161 (- strand)
Length: 456
Type: CDS
Position: Chr11:31735162..31735241 (- strand)
Length: 80
Type: five_prime_UTR

>Vigan.11G193500.01 class=Sequence position=Chr11:31733559..31735241 (- strand)
AAGAGCTTAT GATTTTTGTA ATTCCATTCT CATCTAGAGT CCCACCTTAT CTTTGAGCAA GTAAATCACA CAAACTATAG
ATGAGTTGCA AGATAAACTC CATAAGCTCA CCATTACTGT GCAAATTGTG CACCAAAAAA CCAAAGCTAA GAAGAAGAAA
CATTATCTTA TTTTCCTTTT CCTCAAGTGG GAAAGAGCAG AAAACCATTT CCACCAGAAC AAGGATTGAA AATCCAACAT
CTCAGGCTTA CACTGTCAGT TTCAAGACAG AAAAGGGTTG CAAGCTTTCC ATTTCAAGGT ATCCTGACTT TGAATATGAT
GCAGAGGGGG GAATGGGAAC TGGAGTTGCT GCAAAGGTTA CAGAGAATGG TCCGGCCAAC AATGACCTTC CTGTTTTATT
TGATCTTGAA AGTTTGTATA TTCCATCATT AACAAGTTCT ACTGCCAAGT TTCTTGGATT GCCATTGCCA CCGTTTTTGA
AGATTGATAT AGTTCCAGAA GCATTACATG GAAATATTAA CCAAGAATCT GGCAAGGTAA AACATTTAAG TTCTGAAGAT
TTTTGCTTCA AATTGAAAGG ATTGTGCATT ATGTGTACAA CTTTTAGTGA GCTTTAATAC CTAGGTTGTG TTTGTTTCAA
ACAAAAGTTA TGAAATACCA AGATTGAATA TGCATATACA ATCTTTACTA AAAAATTTTA TACTGTCAAA ATAAGAAATG
ATCTTTGATA CGATTTTTGG AACAGTTATT AAAAATTAAC CAATTTATCA TATAAATGAT AATTGGTGAT TAAATGATAT
TGCAAAGAAT CTTTCTCCCT CTCTCTATAT ATTTATATAA AAGTTATTTA GAGAAGCTAT TTTGTAAAGA GATGAGGTCA
TTTGAACTTG CCATAAGTGT CTCTCTAGTT AGTTTTGTGC AAGTACTACT CAATTGATGA TATGATTGTT TTGGTATTTA
TAACAAGGTT GATCTTGAGT TCAAGGCCAA GTTTTTGTTT TCTGCTGGTA GTCTCTATAA GGCTCCTCCA CTGTTGGTGA
AGACAGTGTT GACATCTGAA GAAACAAAAG GCACTATGAA GAGTGGAAGA GGCAGGAGAA TGGATGAAGA GGGGAAATGC
AAACTGGTTG GTGTAGCAAC AGTTGACCCT ATTGATGATT TCTTTATGAA TTCCTTCCTT GGCCTTCCAA CTGAGTGCCT
TGCTGAGTTA AAGGCTGTAA TCTCCATATC TTCCTCATCT TAAGATCTCA TCACAAAATT TGGACATTTG TTGAAAGTTG
AAACCGATGC AGACTCATAA TATCCAAGTT GGAAGATGAA TGTGAAATAG TAGAAGATGG TATACATAGC AGAAACTAGA
AATAAGTTAA ACTTGAACTA GTTTACCCAT TCAGCCTTGT AGAACACACA ATAGGTAAAG CAAGTATAAT GTATTAAGAA
AAGAAGAGTG AAGTCAAATA CAATATTCAT AAACATTTAT TATCCCAATG TGTTTTTAAC CTCTATTGTC ACACAAGTAT
ATTTCCATGT TGATTTTTTC TATATATTAA TTAACCTTTG GAATGTTTTA GTTTACCTGG TTTTATACAT TTGGACCCCA
AATTTTGCAA AGCTAGTTCG TAACTTTTGC ATGAGAATAT TGTTGTAATG CATCCTTTAT TGGATTAAAA TTCAGAATTT
GGC

>Vigan.11G193500.01
AAGAGCTTAT GATTTTTGTA ATTCCATTCT CATCTAGAGT CCCACCTTAT CTTTGAGCAA GTAAATCACA CAAACTATAG
ATGAGTTGCA AGATAAACTC CATAAGCTCA CCATTACTGT GCAAATTGTG CACCAAAAAA CCAAAGCTAA GAAGAAGAAA
CATTATCTTA TTTTCCTTTT CCTCAAGTGG GAAAGAGCAG AAAACCATTT CCACCAGAAC AAGGATTGAA AATCCAACAT
CTCAGGCTTA CACTGTCAGT TTCAAGACAG AAAAGGGTTG CAAGCTTTCC ATTTCAAGGT ATCCTGACTT TGAATATGAT
GCAGAGGGGG GAATGGGAAC TGGAGTTGCT GCAAAGGTTA CAGAGAATGG TCCGGCCAAC AATGACCTTC CTGTTTTATT
TGATCTTGAA AGTTTGTATA TTCCATCATT AACAAGTTCT ACTGCCAAGT TTCTTGGATT GCCATTGCCA CCGTTTTTGA
AGATTGATAT AGTTCCAGAA GCATTACATG GAAATATTAA CCAAGAATCT GGCAAGGTTG ATCTTGAGTT CAAGGCCAAG
TTTTTGTTTT CTGCTGGTAG TCTCTATAAG GCTCCTCCAC TGTTGGTGAA GACAGTGTTG ACATCTGAAG AAACAAAAGG
CACTATGAAG AGTGGAAGAG GCAGGAGAAT GGATGAAGAG GGGAAATGCA AACTGGTTGG TGTAGCAACA GTTGACCCTA
TTGATGATTT CTTTATGAAT TCCTTCCTTG GCCTTCCAAC TGAGTGCCTT GCTGAGTTAA AGGCTGTAAT CTCCATATCT
TCCTCATCTT AAGATCTCAT CACAAAATTT GGACATTTGT TGAAAGTTGA AACCGATGCA GACTCATAAT ATCCAAGTTG
GAAGATGAAT GTGAAATAGT AGAAGATGGT ATACATAGCA GAAACTAGAA ATAAGTTAAA CTTGAACTAG TTTACCCATT
CAGCCTTGTA GAACACACAA TAGGTAAAGC AAGTATAATG TATTAAGAAA AGAAGAGTGA AGTCAAATAC AATATTCATA
AACATTTATT ATCCCAATGT GTTTTTAACC TCTATTGTCA CACAAGTATA TTTCCATGTT GATTTTTTCT ATATATTAAT
TAACCTTTGG AATGTTTTAG TTTACCTGGT TTTATACATT TGGACCCCAA ATTTTGCAAA GCTAGTTCGT AACTTTTGCA
TGAGAATATT GTTGTAATGC ATCCTTTATT GGATTAAAAT TCAGAATTTG GC

>Vigan.11G193500.01
ATGAGTTGCA AGATAAACTC CATAAGCTCA CCATTACTGT GCAAATTGTG CACCAAAAAA CCAAAGCTAA GAAGAAGAAA
CATTATCTTA TTTTCCTTTT CCTCAAGTGG GAAAGAGCAG AAAACCATTT CCACCAGAAC AAGGATTGAA AATCCAACAT
CTCAGGCTTA CACTGTCAGT TTCAAGACAG AAAAGGGTTG CAAGCTTTCC ATTTCAAGGT ATCCTGACTT TGAATATGAT
GCAGAGGGGG GAATGGGAAC TGGAGTTGCT GCAAAGGTTA CAGAGAATGG TCCGGCCAAC AATGACCTTC CTGTTTTATT
TGATCTTGAA AGTTTGTATA TTCCATCATT AACAAGTTCT ACTGCCAAGT TTCTTGGATT GCCATTGCCA CCGTTTTTGA
AGATTGATAT AGTTCCAGAA GCATTACATG GAAATATTAA CCAAGAATCT GGCAAGGTTG ATCTTGAGTT CAAGGCCAAG
TTTTTGTTTT CTGCTGGTAG TCTCTATAAG GCTCCTCCAC TGTTGGTGAA GACAGTGTTG ACATCTGAAG AAACAAAAGG
CACTATGAAG AGTGGAAGAG GCAGGAGAAT GGATGAAGAG GGGAAATGCA AACTGGTTGG TGTAGCAACA GTTGACCCTA
TTGATGATTT CTTTATGAAT TCCTTCCTTG GCCTTCCAAC TGAGTGCCTT GCTGAGTTAA AGGCTGTAAT CTCCATATCT
TCCTCATCTT AA

>Vigan.11G193500.01
MSCKINSISS PLLCKLCTKK PKLRRRNIIL FSFSSSGKEQ KTISTRTRIE NPTSQAYTVS FKTEKGCKLS ISRYPDFEYD
AEGGMGTGVA AKVTENGPAN NDLPVLFDLE SLYIPSLTSS TAKFLGLPLP PFLKIDIVPE ALHGNINQES GKVDLEFKAK
FLFSAGSLYK APPLLVKTVL TSEETKGTMK SGRGRRMDEE GKCKLVGVAT VDPIDDFFMN SFLGLPTECL AELKAVISIS
SSS*