GBrowse Details

Vigan.11G142400.01

Basic Information:
Name: Vigan.11G142400.01
Multiple alignment
Variant Information
Position: Chr11:22599200..22603207 (- strand)
Length: 4008
Functional Information:
Description: Similar to Holocarboxylase synthetase. [K0A0U9, Elaeis guineensis var. tenera]
InterPro: Uncharacterised conserved protein UCP009193 (IPR016549)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:60.88,49.61,10.61,13.20,15.19,15.29, 14.06,11.26
Arabidopsis thaliana homolog: AT4G09830.1
Automatic updates:
Name: NM_001255221 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100796484 (LOC100796484), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:22599200..22599583 (- strand)
Length: 384
Type: three_prime_UTR
Position: Chr11:22599584..22599964 (- strand)
Length: 381
Type: CDS
Position: Chr11:22601995..22602075 (- strand)
Length: 81
Type: CDS
Position: Chr11:22602891..22603049 (- strand)
Length: 159
Type: CDS
Position: Chr11:22603050..22603207 (- strand)
Length: 158
Type: five_prime_UTR

>Vigan.11G142400.01 class=Sequence position=Chr11:22599200..22603207 (- strand)
CTGCATGTAG CTTTTCTTCT CTCTCCTTCC CAACCTTTTC TTTTCTTCCT CTGTAAAACC CAAACACTTC CTTCCTCTGC
CACCGCTAAC ACCAACCCTT GTCACCCAAA TCTCCAATCT CAAAGAACCA CCCTAACGCT CTCTCCACCG ATTCCGCCAT
GGCCAAGAAG CGCAAGTCCA TTACCACCAG CCTCGACGAG GTCGATCGGA CCCTCTACGC CTCATTCTGT ACCGCCGCCA
ATTCCCTCTC CCAGCTCTAC ACGCACACCA TGAACCACCA GAAGCTCTCC TTCAACGCCG GCGAACGCCA CGCCCTCGTA
ATAAAGCCCG CCCCTTTTTC GTTGTTTCTT CTCCTTTTCC ATTTTGCTAA GAAAGAAAAA GGGGCTTTTT TGTTGTTGGA
AGAGTGGAAT TTGGATTTGA TTTGATTTTC CCTTTTTGGG TCTTCTTTTG ACCGGTTTTT GGGAGTTTAG ATTGTTGGGA
TTTTGTGTTG GTTGGTTAAA TAGAGAACAT GGTATTTATT TTGGTGCTTT TTAAAATTTA AATGTTTTTG TGTTTGATTT
TGAATTCAGG AAGATTGGAT TTGGATGAAA AATCTTTGTT TTTTGTTGTT CTTTGTGTGT TATGAGAGCT ATTGTGGGGG
ATTTGAAGAT GTGGAATGGT TTTTTTTCCT GACATGCTTG TATCAGAGTT TGTTCATTTT AGTTAAACTA TTTGAGTACA
CATTATTTGA ACAAGTTGGA GCTGCTTTTG ATATCTTTGC ATTTGGGAAA TTGTGTTACA GTTTAAACTA TTAATTTTTT
GTTGTTGTTG TTGTTGAGTA CTGGTTCTCT TTTTTTAACT AACGTTTTCT TATTGACCGT TGGAATTGTT TTGACTCCAT
TATTTGACCT CATTTTAGTG ATATCCGTCG TGCTGTTTAT CTCATCTTTC ATGTATGTCG ATTGGTTGTT CAGCTGCAAG
TAGGTATGGT TATATATGTT TCTTTCGTGT TGTGAATAAA AACTTTTGCT GGTTCCACTT TTCGAGTTGT AACTGCAGCA
TAATTATTCG TGTGTCTAGT ATATGCTTCG CTCTTGTGTT TGGGGTCTTG ACCATGCGTT TATATTTTCG CTGCGGGATG
TTCTGATTTC AGGAAAATCT TTATGAGTGG ATTTGGAGAC AACAAGAAGG AGGATCAAGG GTTGCAACAA TTGATGTGCT
CAACTACATA CAGGTTGGTT TGGCATTTAC TCCTTTTGCA TATAATATAG TATTATTGTG CATGCTTGTA CTGTTGGGAT
TGGGGATTGT TCTGTAGCAA ACAGAGATAA TGACTTATGA AAGGCCAACA GATCAGAAAA ACTGGTTTAG TTCAGACTTT
ATTTCTTATA TCAATGTTTT TAAAGTTGTG GTTGTGGTAG CATTGCAATT ACATGCACAA TAAATACAAA ATTGCAGGGA
TATATGGCCA ATGCAACAAC ATGTGGGATT GTGGATAGAC TGCTTCTTAT AACCTTGTAA TGGACTATTG GCTGGATCAT
GGGCTAAATT TTTCACTTGA GGTTGTCAAT TTATAAGCTT TCTGAACCAA GCCTCACAAA ACAAAAGGCT TTATATAGTC
AGTCTATAAA CCAGCTAGGA TCAGCAGAGT GTTATTTTGC ACACAGGGAA AGAAACTGGT AGAGATGCTT GCTTAATTAT
TCAATTTGGT CTCCATAGCC AGGGTCAGTG TCATTGACCT CTCTCTGGCA ACTTTCTTTC TCTCTCTGTT CTTTTTGGCA
TTTCAAGCTT GAGCATTGAA TGAATGCTAA TTGTTAATTT GTTAAATTCT TGAGATTACT CATTAATATT TTTTATAATA
TCAAATCATG GTAGTTGAAT TGAGGTACAA ATTATGTATC GGAAAGTTTG AGAATAGTAA GATTAATGAT TCACAAACAC
TAAAAAAATG TAAGATATAC TTAAATATAT AATATTTATA AACATGCAAA GATACAATTA ATAACAAAAC AAACTCAGTC
AAAAAGAGTG GTTGTATTCG TGTATTTATT TACTACACAA TTTCAGTAAC ACAGCCTTAA AAAAAATGTG GTATGAAGAT
TCCTATAACC ATTGTTGTTC CACAGCTCTT CTGTTTCCTC ATTCCCCTAT CTTGCTGTCC ACAATCTTCC ACCGCTCTTC
CCACTGTCCC GGTCCTCCTG TTGTCGCATT GCAGTTCCTG CTCTTTTACT CAGTTTGTTC TAATCATTGG AGAAGCACAG
AGGAACCATT ACCACCTATT TTTTTGTTTA TTTCATGGTT TAAAAGAAAC TAAATTTATG TTTTTTACCA AACCAGTTTG
CATGACCCAA CCCATTTCAA GTAAAACCCA AATGCAAATT TACCATGATT TAGGGCACGA AAGAAACCAG AATTGCAATT
CATGCGAACT ATTCGAATGA TACAAGAGTG ATGCAAGAGT AAAAACAATA AAGTGGATCC CCTGTGATAT TTTGAGCAGC
GGTGTAGTAG TATCAAATCC CAAAAATAGA AAATATTTTC CTTTACTTGC AAGAACTAAG ATAAGAAAGA AAAAACTTTT
ACCAAGATTC TATAAAAATG AATCTATCAT ATATTTTTGT ATATGATATA TAAAATTGAG ATATTTACTT TTCCAAAAAT
TATAATTAGG GTGTTAATGC CAATGCTTTA TTCCCTTTTC TGATGGTAGG AGAAAAGATA AAACTAAAAA AAAGATGAAA
TTCTTTATTT ATTAGTATGG TGAGGGAAAA GAATAGTATC GGATTGTAGA ATTCATATCA TGTATGGTAC TTTTTGCATG
GTGTGTATCA CAGTATACTT ACTACCATGA AATAGTCTAG TTTATTCATT TGTTTAAAAT GTTGCTTATT AAGATGTATT
AATAAAAGCT GTTTTGCTCC CGGCATATTT CATCTTCTGT ACTTATATAA CAGGAGGTGA AGTGTATTAG TATACATATG
CTATTTCAAA TATTCAAGCA CAATTGTATA AATTCTGTTA ATGCACCTGT AGGCTTTAGA AGGTCTGTGA TTACAAAGTA
GCCTATAAAC TCAAAGGAGA GTTTTATCAT ACTGATGTAG TCCTAGTTAT ACTCCATGGT TGTGAATATT GAACTTCAAC
GGCACAACAA GAGTCACATT GTAAATAACA TTTGGTGTCA AATTTGCCAT TTGTAATACA CACTTTTTCA AAATTATTGA
TGATTTGGGT TGTGAAATAT ATGAAAGTCC ATTCTTCTTG CAGAATGAGC TGGATTATTG TGAAGAGCCA TCTATGTCAC
CTAGAGCACC ACTGCAACAC CACCAGTCAC AACCAACATT GCATATGCCC AGCTTGGGCT TTCCTGTCAC TTCAGCGTCT
TCTGGCCAAA CTATAGCTGC ACAAGGACTT CGTGCCGAAC CTGATGAAAA TCAACAGAAA AATTCTGTGT TTTCGAATGC
CTTGTCAAGT CCAATACGCC GAAGCCTTCA ACATTATCAA ATTGGTGAGG GAGGATGCTA CAGCAATGGT CCCTTCATGG
GGAATGGAAA CCGGAACACT GAACTTGGCT TTCTTTCTCA GCATGGCAGG GAATCAATAG TAATGAGCTC CAATGATTCT
GCCATGGATA TGCATGCAGA CTAGTCCTGT ATATTGGTTT ATCAATTGGG AATTCTTAAC TCAGCAGCCT TCTGCAACAG
CTACAACAGA AGCCAACAAC CTTGGAAATT CCATTTCTGG ATTTTCTCAT TGGATCTTGC AAGAAACGAC AGGCGGAAGG
AACTAATTAT GTTAACCTTT TACTATGCTT ATGTCAACCG GGTGATCGGT TTGGGGTTCT TAGTGGTTTT TGTAAAGTTT
TTAAGAGTTT TAAGAGTTGT TTTAGTGGTT TGGGGTTTTT AAGTTTTATG TCAACCAATT CTGTTGATCA GCTTTTAAGA
GTTTTATTTT GTACCTTGAA TTGTTTCACT CCTCGCCCTT TCACCAAAAA AGCTGTCTTT TCAGTGTACG GCTGATTCTA
TCTGAAGT

>Vigan.11G142400.01
CTGCATGTAG CTTTTCTTCT CTCTCCTTCC CAACCTTTTC TTTTCTTCCT CTGTAAAACC CAAACACTTC CTTCCTCTGC
CACCGCTAAC ACCAACCCTT GTCACCCAAA TCTCCAATCT CAAAGAACCA CCCTAACGCT CTCTCCACCG ATTCCGCCAT
GGCCAAGAAG CGCAAGTCCA TTACCACCAG CCTCGACGAG GTCGATCGGA CCCTCTACGC CTCATTCTGT ACCGCCGCCA
ATTCCCTCTC CCAGCTCTAC ACGCACACCA TGAACCACCA GAAGCTCTCC TTCAACGCCG GCGAACGCCA CGCCCTCGAA
AATCTTTATG AGTGGATTTG GAGACAACAA GAAGGAGGAT CAAGGGTTGC AACAATTGAT GTGCTCAACT ACATACAGAA
TGAGCTGGAT TATTGTGAAG AGCCATCTAT GTCACCTAGA GCACCACTGC AACACCACCA GTCACAACCA ACATTGCATA
TGCCCAGCTT GGGCTTTCCT GTCACTTCAG CGTCTTCTGG CCAAACTATA GCTGCACAAG GACTTCGTGC CGAACCTGAT
GAAAATCAAC AGAAAAATTC TGTGTTTTCG AATGCCTTGT CAAGTCCAAT ACGCCGAAGC CTTCAACATT ATCAAATTGG
TGAGGGAGGA TGCTACAGCA ATGGTCCCTT CATGGGGAAT GGAAACCGGA ACACTGAACT TGGCTTTCTT TCTCAGCATG
GCAGGGAATC AATAGTAATG AGCTCCAATG ATTCTGCCAT GGATATGCAT GCAGACTAGT CCTGTATATT GGTTTATCAA
TTGGGAATTC TTAACTCAGC AGCCTTCTGC AACAGCTACA ACAGAAGCCA ACAACCTTGG AAATTCCATT TCTGGATTTT
CTCATTGGAT CTTGCAAGAA ACGACAGGCG GAAGGAACTA ATTATGTTAA CCTTTTACTA TGCTTATGTC AACCGGGTGA
TCGGTTTGGG GTTCTTAGTG GTTTTTGTAA AGTTTTTAAG AGTTTTAAGA GTTGTTTTAG TGGTTTGGGG TTTTTAAGTT
TTATGTCAAC CAATTCTGTT GATCAGCTTT TAAGAGTTTT ATTTTGTACC TTGAATTGTT TCACTCCTCG CCCTTTCACC
AAAAAAGCTG TCTTTTCAGT GTACGGCTGA TTCTATCTGA AGT

>Vigan.11G142400.01
ATGGCCAAGA AGCGCAAGTC CATTACCACC AGCCTCGACG AGGTCGATCG GACCCTCTAC GCCTCATTCT GTACCGCCGC
CAATTCCCTC TCCCAGCTCT ACACGCACAC CATGAACCAC CAGAAGCTCT CCTTCAACGC CGGCGAACGC CACGCCCTCG
AAAATCTTTA TGAGTGGATT TGGAGACAAC AAGAAGGAGG ATCAAGGGTT GCAACAATTG ATGTGCTCAA CTACATACAG
AATGAGCTGG ATTATTGTGA AGAGCCATCT ATGTCACCTA GAGCACCACT GCAACACCAC CAGTCACAAC CAACATTGCA
TATGCCCAGC TTGGGCTTTC CTGTCACTTC AGCGTCTTCT GGCCAAACTA TAGCTGCACA AGGACTTCGT GCCGAACCTG
ATGAAAATCA ACAGAAAAAT TCTGTGTTTT CGAATGCCTT GTCAAGTCCA ATACGCCGAA GCCTTCAACA TTATCAAATT
GGTGAGGGAG GATGCTACAG CAATGGTCCC TTCATGGGGA ATGGAAACCG GAACACTGAA CTTGGCTTTC TTTCTCAGCA
TGGCAGGGAA TCAATAGTAA TGAGCTCCAA TGATTCTGCC ATGGATATGC ATGCAGACTA G

>Vigan.11G142400.01
MAKKRKSITT SLDEVDRTLY ASFCTAANSL SQLYTHTMNH QKLSFNAGER HALENLYEWI WRQQEGGSRV ATIDVLNYIQ
NELDYCEEPS MSPRAPLQHH QSQPTLHMPS LGFPVTSASS GQTIAAQGLR AEPDENQQKN SVFSNALSSP IRRSLQHYQI
GEGGCYSNGP FMGNGNRNTE LGFLSQHGRE SIVMSSNDSA MDMHAD*