GBrowse Details

Vigan.11G100100.01

Basic Information:
Name: Vigan.11G100100.01
Multiple alignment
Variant Information
Position: Chr11:13200041..13202608 (+ strand)
Length: 2568
Functional Information:
Description: Similar to chlorophyll a-b binding protein 6A, chloroplastic-like. [XP_006599410.1, Glycine max]
GO: Biological Process: photosynthesis, light harvesting (GO:0009765)
Cellular Component: membrane (GO:0016020)
InterPro: Chlorophyll A-B binding protein, plant (IPR001344)
Chlorophyll A-B binding protein (IPR022796)
Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.18,0.99,348.98,3224.41,3.34,704.73 ,15.50,531.63
Arabidopsis thaliana homolog: AT3G54890.1
Automatic updates:
Name: NM_001249067 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305992 (LOC100305992), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249067 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chlorophyll a-b binding protein 6, chloroplastic-like (LOC100305992), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:13200041..13200176 (+ strand)
Length: 136
Type: five_prime_UTR
Position: Chr11:13200177..13200499 (+ strand)
Length: 323
Type: CDS
Position: Chr11:13201103..13201205 (+ strand)
Length: 103
Type: CDS
Position: Chr11:13201635..13201923 (+ strand)
Length: 289
Type: CDS
Position: Chr11:13202147..13202298 (+ strand)
Length: 152
Type: CDS
Position: Chr11:13202299..13202608 (+ strand)
Length: 310
Type: three_prime_UTR

>Vigan.11G100100.01 class=Sequence position=Chr11:13200041..13202608 (+ strand)
TTTGCGTATC TGACATGTAA TCTCCACCAC ACACACCCCT CCTTAATATC CACAAGTGGT TCCACCTCAT GAATCAAAAC
GGATGGACAA ACACTAACGT GGACCAATCA AATGTTGTTT CCAACATCAT CACCCAATGG CAATCCACTT TTGGATTTGC
CTATATCCAC ACTCTCCTAT ATTCACCACT CTTGTGTTCA TTCCAACATT GTCTTTCCCC AATTCACACA CTCTTTACCA
ATTCTCAGAA ACTCTTCAGA GCCAAAGCAT GGCTGCCAAC ACATTGATGA GCTCTGCTAT CACAGCTTTC CCTTCTCTCC
TTTCTTCCTC AAAATCAAGG TTTGCCTCAG CAGTCCCCAT TTCCAGCTTT GGCACCAATG TCTCTTCTAG GTTTTCCATG
ACTGCTGATT GGATGCCTGG CCAGCCTAGA CCCCCTTACC TTGATGGTTC AGCACCAGGG TATGTCTCAG AATCTCATCT
TTCTGGTTTA GTACAATAAT CTTAACTTTA AAAGTTTTAT GTCGTAAAAA TGTTATCTTG CTGTTGAACT ATACTTTTTT
ACTCTGAAAC TTTACATGAA CATGGTTCAG TTTCTCAAAG TTTAGAAAAA TTTGTCTTTT ATATACGAAA AATACAGGAT
TTTCTTTAAC TATTACTCAG AACTGAAACA TCAAATTTAA AGAATTAAAA CAGTTTTTTA GAATTGTGAC ACTGCAGTTA
CTTTTTTTTC AGAAATAATT TTGCATTTAG TGTACATGGG ACTTTGTGTT CAGACACTCA TCTAAACTAT ACGAACTCCT
AAAGAAGTAA CTCTTAATTA AATTGTATTT ATCTATTGAT CTTTACAAAT TAAAAGTGGT ATATTTTTAA GTAAAACGCT
TACAAGTGCA TTGATTTTAT TAAATTTAAA AATTGAAAGT AAGAAAATTA AAGGCAAATC GGTGAAAAAA ATCACTTTGG
TGTGCCAATA ACAGTATATT AGTGATTTTG AATGCTTTGC TGGTTTTGTT TTGATGTTGA TCTGTGCATA ATGCACGTTA
TATGCTCTTT GTTTTGTTTT AGTGACTTTG GATTCGACCC TCTTCGTCTT GGTGAAGTGC CAGAGAATCT TGAGAGGTTC
AAAGAATCAG AACTCATTCA CTGCAGATGG GCCATGCTTG CTGTTGTAAG TTTCACTTTT GAAATAACAG TTTTGTTTTC
TTTATTGTAA TATACTGCCA GAAACATGCA TTCAGTCTTG TATAATTGCT TTCTATCCTT AATGTTTTAG AAGTAGTTCA
CTCAAGTGAG GATATATATA ACTAAATGAG TAAATAATAC ATTTACTTAT ACTTTCATTT AAATTCAAAA CATTATGTTT
GCTAACTTGA CTGACTGACT GCATAATTTG TTTTGCATAC CTATTAAGCA CTACCTAACT ACCATAAACC TCTGCTTATA
GTTTCTTGCA TTTTGGTGTT GGAAAAAAAA TGTCAAAGGA CACATTTATA TATTCAGACC TTCATATCAC TTGAAAAGAG
TTTGTGTATC AGATATTTCA ACAGAAAAGA AAAAAGAATT TTAGTTTGCT GAAATTTCTT ATATATTGGT GCAGCCAGGG
ATTTTGGTTC CGGAGGCATT GGGCTTAGGA AACTGGGTAA AGGCTCAGGA ATGGGCTGCA GTTCCTGGTG GCCAAGCCAC
CTACCTAGGA AACCCAGTTC CATGGGGCAC ACTACCCACC GTTCTGGTCA TTGAATTCCT TGCTATTTCC TTTGTGGAGC
ACCAAAGGAG CATGGAGAAA GACCCAGAGA AGAAGAAATA CCCTGGTGGT GCTTTTGATC CTTTGGGATA CTCCAAGGAC
CCTAAAGCAT TCCATGAATA CAAAGTCAAA GAACTTAAGA ATGGTGAGAA CCGTAAGCCG TATCATAACA TATCAATTAT
TTGGTTTTAT AAGGTTTCTT AAGCATATAT ATAATATGTG TTGATAAGCA TTTAGAGGTT GAAGTTAACT CCTAAAAGAA
TCTTATTATC CTTAACAATT AGTCCTTGAG ATACACTGGT TTAAAAGAAC ATCTTTTGTT GTTACATATA ACATTGGCCT
AATTTGTTAT ATGTCCAATG TTTTAGGACG TCTTGCTTTG TTGGCTTTTG TGGGATTCTG TGTTCAACAA TCAGCTTATC
CTGGAACTGG ACCTTTGGAG AACTTGGCTA CTCACTTGGC TGACCCATGG CACAACAACA TCGGAAACAT CATTATTCCA
CAATCGATTT TGCCTTGAAA AATCCACTAT TTGTTTTAGT AGCTACTTGT ATAACAATTT GTAATCAATC AGATCTGGCT
ATGTTGGTAT CCCTGTGCAG TAATTATACT TCCAATAAGT AATGTTTCGA ATCTCATATT TTGACAACTC AGTGTGAAAC
AAAAGAACTT CCAAGTCAAG TTGGTAATTT GCATTACGTT TATGTCCAAC AATGCATAAA ATATGCTTCA AACTAAGCTA
TAGCATGTGT GGAAACATGT TGAGAATAGA AAGAAAATCA ATTTAGGATG GAAAAGTTAT AACTATTAGT TTCCGAAAAT
CAGAGGAA

>Vigan.11G100100.01
TTTGCGTATC TGACATGTAA TCTCCACCAC ACACACCCCT CCTTAATATC CACAAGTGGT TCCACCTCAT GAATCAAAAC
GGATGGACAA ACACTAACGT GGACCAATCA AATGTTGTTT CCAACATCAT CACCCAATGG CAATCCACTT TTGGATTTGC
CTATATCCAC ACTCTCCTAT ATTCACCACT CTTGTGTTCA TTCCAACATT GTCTTTCCCC AATTCACACA CTCTTTACCA
ATTCTCAGAA ACTCTTCAGA GCCAAAGCAT GGCTGCCAAC ACATTGATGA GCTCTGCTAT CACAGCTTTC CCTTCTCTCC
TTTCTTCCTC AAAATCAAGG TTTGCCTCAG CAGTCCCCAT TTCCAGCTTT GGCACCAATG TCTCTTCTAG GTTTTCCATG
ACTGCTGATT GGATGCCTGG CCAGCCTAGA CCCCCTTACC TTGATGGTTC AGCACCAGGT GACTTTGGAT TCGACCCTCT
TCGTCTTGGT GAAGTGCCAG AGAATCTTGA GAGGTTCAAA GAATCAGAAC TCATTCACTG CAGATGGGCC ATGCTTGCTG
TTCCAGGGAT TTTGGTTCCG GAGGCATTGG GCTTAGGAAA CTGGGTAAAG GCTCAGGAAT GGGCTGCAGT TCCTGGTGGC
CAAGCCACCT ACCTAGGAAA CCCAGTTCCA TGGGGCACAC TACCCACCGT TCTGGTCATT GAATTCCTTG CTATTTCCTT
TGTGGAGCAC CAAAGGAGCA TGGAGAAAGA CCCAGAGAAG AAGAAATACC CTGGTGGTGC TTTTGATCCT TTGGGATACT
CCAAGGACCC TAAAGCATTC CATGAATACA AAGTCAAAGA ACTTAAGAAT GGACGTCTTG CTTTGTTGGC TTTTGTGGGA
TTCTGTGTTC AACAATCAGC TTATCCTGGA ACTGGACCTT TGGAGAACTT GGCTACTCAC TTGGCTGACC CATGGCACAA
CAACATCGGA AACATCATTA TTCCACAATC GATTTTGCCT TGAAAAATCC ACTATTTGTT TTAGTAGCTA CTTGTATAAC
AATTTGTAAT CAATCAGATC TGGCTATGTT GGTATCCCTG TGCAGTAATT ATACTTCCAA TAAGTAATGT TTCGAATCTC
ATATTTTGAC AACTCAGTGT GAAACAAAAG AACTTCCAAG TCAAGTTGGT AATTTGCATT ACGTTTATGT CCAACAATGC
ATAAAATATG CTTCAAACTA AGCTATAGCA TGTGTGGAAA CATGTTGAGA ATAGAAAGAA AATCAATTTA GGATGGAAAA
GTTATAACTA TTAGTTTCCG AAAATCAGAG GAA

>Vigan.11G100100.01
ATGGCAATCC ACTTTTGGAT TTGCCTATAT CCACACTCTC CTATATTCAC CACTCTTGTG TTCATTCCAA CATTGTCTTT
CCCCAATTCA CACACTCTTT ACCAATTCTC AGAAACTCTT CAGAGCCAAA GCATGGCTGC CAACACATTG ATGAGCTCTG
CTATCACAGC TTTCCCTTCT CTCCTTTCTT CCTCAAAATC AAGGTTTGCC TCAGCAGTCC CCATTTCCAG CTTTGGCACC
AATGTCTCTT CTAGGTTTTC CATGACTGCT GATTGGATGC CTGGCCAGCC TAGACCCCCT TACCTTGATG GTTCAGCACC
AGGTGACTTT GGATTCGACC CTCTTCGTCT TGGTGAAGTG CCAGAGAATC TTGAGAGGTT CAAAGAATCA GAACTCATTC
ACTGCAGATG GGCCATGCTT GCTGTTCCAG GGATTTTGGT TCCGGAGGCA TTGGGCTTAG GAAACTGGGT AAAGGCTCAG
GAATGGGCTG CAGTTCCTGG TGGCCAAGCC ACCTACCTAG GAAACCCAGT TCCATGGGGC ACACTACCCA CCGTTCTGGT
CATTGAATTC CTTGCTATTT CCTTTGTGGA GCACCAAAGG AGCATGGAGA AAGACCCAGA GAAGAAGAAA TACCCTGGTG
GTGCTTTTGA TCCTTTGGGA TACTCCAAGG ACCCTAAAGC ATTCCATGAA TACAAAGTCA AAGAACTTAA GAATGGACGT
CTTGCTTTGT TGGCTTTTGT GGGATTCTGT GTTCAACAAT CAGCTTATCC TGGAACTGGA CCTTTGGAGA ACTTGGCTAC
TCACTTGGCT GACCCATGGC ACAACAACAT CGGAAACATC ATTATTCCAC AATCGATTTT GCCTTGA

>Vigan.11G100100.01
MAIHFWICLY PHSPIFTTLV FIPTLSFPNS HTLYQFSETL QSQSMAANTL MSSAITAFPS LLSSSKSRFA SAVPISSFGT
NVSSRFSMTA DWMPGQPRPP YLDGSAPGDF GFDPLRLGEV PENLERFKES ELIHCRWAML AVPGILVPEA LGLGNWVKAQ
EWAAVPGGQA TYLGNPVPWG TLPTVLVIEF LAISFVEHQR SMEKDPEKKK YPGGAFDPLG YSKDPKAFHE YKVKELKNGR
LALLAFVGFC VQQSAYPGTG PLENLATHLA DPWHNNIGNI IIPQSILP*