GBrowse Details

Vigan.11G063300.01

Basic Information:
Name: Vigan.11G063300.01
Multiple alignment
Variant Information
Position: Chr11:7243134..7244111 (+ strand)
Length: 978
Functional Information:
Description: Similar to uncharacterized protein. [A2XHZ1, Oryza sativa subsp. indica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.82,3.26,8.04,25.37,7.35,21.35,5.97 ,7.12
Arabidopsis thaliana homolog: AT5G15802.1
Automatic updates:
Name: NM_001253098 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100812361 (LOC100812361), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253098 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc-finger protein HCF222-like protein (LOC100812361), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:7243134..7243136 (+ strand)
Length: 3
Type: five_prime_UTR
Position: Chr11:7243137..7243249 (+ strand)
Length: 113
Type: CDS
Position: Chr11:7243543..7243762 (+ strand)
Length: 220
Type: CDS
Position: Chr11:7243763..7244111 (+ strand)
Length: 349
Type: three_prime_UTR

>Vigan.11G063300.01 class=Sequence position=Chr11:7243134..7244111 (+ strand)
AAAATGGATA ACATCACAGC AAGTGAAATA GCTGGCTTGG CAGTGGGTGC TCTCCTCTTA TCTGCCACCG TTGCTGCCAC
CAAAGTTGAT GCCTTCTTCT CTTCTTCTCA ACGCAGGTTT TCTCTCTCAA ACCCTATTTA TATATGTGTG ATTCTTTTTC
AAGAACTGCT TCGTTATTTG ATTCTGTGCC ATTGTGTTGA ATCTTTCACA AACCTTTGAA TTGTATTGCA CGAATGATGA
AGTGAATTTC GATAACTAGA TTTTGAACGG TGTTGAGGAA TAAATATAAC GCAGTAGATT CTGCAGAAAA ATCAGGAGAA
AATGTTGTAA ACAAACCCTG CAGTGAGAAA TTGGTGCTTT TGTTTTTTGA TATCCTCTCT TTATTGACAC CGCAATGTTT
TACTTACAGC TCATTGGGGA TGTGCAAGCG ATGTGGCAAC CTGAGGAGAT TGTCTTGTTC CACCTGCAAA GGAACCGGGT
CTATTAGAGA AGGGGGATTG CTTGGTATTA AACCTCTTGA GGATTTGTTT GAAACAATTG ATAACAGTGA ATCAAAGGTG
AAGCAGATAG CATGTGTAAA ATGTCAAGCC AAAGGTTATT TTTCATGTCC TAATTGTTCT CAACTATAAC CACTCTGATT
TAATCTTCTC TGTCTCCAAT TATAGCATTA TGAATTATGA ATACAACTCC TCACATGTAG AGGTATGAAA CCCCATTTTC
TTCTTCTCCT GCTATAAAAT CCCTTTATAC CTTGTTTCTA AAACTGGTAT AATTTGTAAT TTTGTATACT GCTTTGCCGG
GTTTCTTGGT GTGTTTTGTT AAACAGATGT TTTCATCTGT ACTAATCATT GTTCTTGATT TAAAAGTTTT GAACCCATTT
ATGTGTGCTA AATTTGGTAC ACTTCTTTAG TTCCTTCTAT TAAGATTTTG TGCATCTGTT TAGTCTGTGG ACAACATGTT
AGAGCAGTCA TGCGGTAA

>Vigan.11G063300.01
AAAATGGATA ACATCACAGC AAGTGAAATA GCTGGCTTGG CAGTGGGTGC TCTCCTCTTA TCTGCCACCG TTGCTGCCAC
CAAAGTTGAT GCCTTCTTCT CTTCTTCTCA ACGCAGCTCA TTGGGGATGT GCAAGCGATG TGGCAACCTG AGGAGATTGT
CTTGTTCCAC CTGCAAAGGA ACCGGGTCTA TTAGAGAAGG GGGATTGCTT GGTATTAAAC CTCTTGAGGA TTTGTTTGAA
ACAATTGATA ACAGTGAATC AAAGGTGAAG CAGATAGCAT GTGTAAAATG TCAAGCCAAA GGTTATTTTT CATGTCCTAA
TTGTTCTCAA CTATAACCAC TCTGATTTAA TCTTCTCTGT CTCCAATTAT AGCATTATGA ATTATGAATA CAACTCCTCA
CATGTAGAGG TATGAAACCC CATTTTCTTC TTCTCCTGCT ATAAAATCCC TTTATACCTT GTTTCTAAAA CTGGTATAAT
TTGTAATTTT GTATACTGCT TTGCCGGGTT TCTTGGTGTG TTTTGTTAAA CAGATGTTTT CATCTGTACT AATCATTGTT
CTTGATTTAA AAGTTTTGAA CCCATTTATG TGTGCTAAAT TTGGTACACT TCTTTAGTTC CTTCTATTAA GATTTTGTGC
ATCTGTTTAG TCTGTGGACA ACATGTTAGA GCAGTCATGC GGTAA

>Vigan.11G063300.01
ATGGATAACA TCACAGCAAG TGAAATAGCT GGCTTGGCAG TGGGTGCTCT CCTCTTATCT GCCACCGTTG CTGCCACCAA
AGTTGATGCC TTCTTCTCTT CTTCTCAACG CAGCTCATTG GGGATGTGCA AGCGATGTGG CAACCTGAGG AGATTGTCTT
GTTCCACCTG CAAAGGAACC GGGTCTATTA GAGAAGGGGG ATTGCTTGGT ATTAAACCTC TTGAGGATTT GTTTGAAACA
ATTGATAACA GTGAATCAAA GGTGAAGCAG ATAGCATGTG TAAAATGTCA AGCCAAAGGT TATTTTTCAT GTCCTAATTG
TTCTCAACTA TAA

>Vigan.11G063300.01
MDNITASEIA GLAVGALLLS ATVAATKVDA FFSSSQRSSL GMCKRCGNLR RLSCSTCKGT GSIREGGLLG IKPLEDLFET
IDNSESKVKQ IACVKCQAKG YFSCPNCSQL *