GBrowse Details

Vigan.11G054600.01

Basic Information:
Name: Vigan.11G054600.01
Multiple alignment
Variant Information
Position: Chr11:6185672..6187773 (- strand)
Length: 2102
Functional Information:
Description: Similar to uncharacterized protein. [C6THE9, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S19e (IPR001266)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Ribosomal protein S19e, conserved site (IPR018277)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:54.22,140.11,149.40,98.13,248.65,387.38,306.71,128.18
Automatic updates:
Name: NM_001248495 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527647 (LOC100527647), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289265 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S19-1 (LOC100805469), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:6185672..6185989 (- strand)
Length: 318
Type: three_prime_UTR
Position: Chr11:6185990..6186062 (- strand)
Length: 73
Type: CDS
Position: Chr11:6186464..6186647 (- strand)
Length: 184
Type: CDS
Position: Chr11:6186721..6186811 (- strand)
Length: 91
Type: CDS
Position: Chr11:6187629..6187712 (- strand)
Length: 84
Type: CDS
Position: Chr11:6187713..6187773 (- strand)
Length: 61
Type: five_prime_UTR

>Vigan.11G054600.01 class=Sequence position=Chr11:6185672..6187773 (- strand)
GCCTACCAGA GTGAGATTGA GTTCTGAGAT AGCTAATTTT TATTTTTCCA GTGATTCATC AATGGCAACA GCGAGGACTG
TTAAGGATGT TTCGCCACAT GATTTTGTGA AGGCTTACGC ATCCCACCTC AAGCGTTCTG GCAAGGTTCA AAATTTCCAC
GTCTTTCATC GTTTCCCTTT CTGGGTCTTT CGAATTTCCA CTTTTTCCTC GCCATCCAAT TCTCTTACTC GGCTGGGTTG
TTTTTGTAGT TTGATGTTTC TTTAATGTTG TCTTTTTGTT GTGTCTGGTT CGAAATAATA AAGATGATAG TAATATCTTT
TTACCTGCAT TATGTTTATT CTAAGGTAAA AGTTTAAATT AAATGTTCTG CCTTGTACTA AGGGGATCCA TTGCTGTACT
GGTGAACTAA TGTACTTAAC CTGTGTACCT TTTTGGATAT AATTTGTGGT GGAGACTGTG GTTTGTCACA ATGTTTGTTA
TTGCGGACAA ACGTGGCCTT AATTGTTGCA GTGAACATCT CAAAAATTTT ATTTTACAGG TGCAACGGCG GTCATGTGTC
TTGCTTTAAA CCTTGAGTAT TAGTTATTGT ATGTTGTTTG ATGGGTAGGA AAGTGGAGGG TTTTATAACC CTGATTGTAT
GTTGTCTTGT GGGTGGAAAG GTTGGTAGAT TTATTTTATA TCTGGATGTG ATATATGAGT GAGAAGTGTT TATGTTATAA
TGGGGTATGG AAGATATTTG TTTGCTTTAG TTTTTTTTCC ATGGTCTTGA ATGATAGTTA CAATTTATTT CGTTGACATC
TTAATTTGAA GTTGAATCGT TTATCTGTGG TGCGTCTGCA AATGTCTATC AATGTTGTAT GTGCTGATTC TTAGTGTTTA
TTTAAGTAGT AACTAGGTGG TTGACATTTG AGCCTTGAAG GCTTTTTCGT TCTAGTTTCT GAAAGTTTAG TTCATTCAAC
AGATGGAGCT TCCTGAGTGG ACTGATATTG TAAAAACAGC CAAATTTAAG GAACTGGCTC CATATGATCC AGACTGGTAT
TACGTGAGAG CTGGTGAGTT TATGGTAACA CAACTTATAT AATATTCACT TTGGTCATGA CTAATGGAAT TCAACCTTGA
TTGCAGCCTC AATGGCAAGA AAGATTTATT TGAGAGGTGG TCTCGGTGTT GGTGCTTTCC AGAGAATCTA TGGTGGAAGC
AAGAGGAATG GAAGCCGCCC ACCACATTTC TGCAAGAGCA GTGGTGCTAT TGCCAGACAC ATTCTGCAAC AGTTGGAGAT
CATGAACATT GTTGAGATTG ATACTAAAGG GTAATTCATG TTTCAATTCT TAATTACATG CCACAAGTTC TAATGGAGAA
AATACCAAGT TTTTTAATTT AAGTATGTTG TCATTCAATG ATTGACCTAT GGCAGACTTG CATGGTGGAT TTCATTCACC
ATACACAATT TGTGAATATA CAGGCCCACT ATGGTGGTGC CGTAAGTTTA AAGGTGTTTT TATATGGTTT TGATGGTGTC
GTAAATGCAA TGGTGTGTCT ATATGATGCT AGTTTGCCTT ATGCCGTATT CAGCCATCTG CCATGATAAC ATTGAGAAGA
AGTTTGCGAC ATCCTTTCTT GTCGTTGGTT CTTTCAGCAT TTATTTGTCT TTTGTAGCTT AATTCTGTTT TGGTATTCAA
AGTTTTTTTG TGCTTTATGT TTTCATTGCA GAGGTAGGAA AATCACTTCT AGTGGTCGAA GGGATCTTGA CCAAGTTGCT
GGGCGAATTG TGGTTGCTGC TTGAACTTGT TATTGAGAAC CGATAATGCA TACCCTAGGA TGGATGTTTG CTTATTAGTA
GAATTGGCAT CAAAGAAAAA TTAAGTATTG TTTGCTGAGA ATTTTATAAT TTGTTTTGTT AAATGTTGAA GCTTTTTCTA
GTTTGGAGTT GGAGTTTTGA TCTTTAAGGT TTTGATTCAA GTTCTCAATG TGTTATCTTC TCCAATCCCA TCATTATATT
GAACCTCCCT GTTCAACAGC CTTGTTCTTT CTCTATTGCA TTATTTCCCT ATTATAAGAA AACATGTGAA AAAGAAGCCA
AAGAATAAGA AAAAAGACGA AC

>Vigan.11G054600.01
GCCTACCAGA GTGAGATTGA GTTCTGAGAT AGCTAATTTT TATTTTTCCA GTGATTCATC AATGGCAACA GCGAGGACTG
TTAAGGATGT TTCGCCACAT GATTTTGTGA AGGCTTACGC ATCCCACCTC AAGCGTTCTG GCAAGATGGA GCTTCCTGAG
TGGACTGATA TTGTAAAAAC AGCCAAATTT AAGGAACTGG CTCCATATGA TCCAGACTGG TATTACGTGA GAGCTGCCTC
AATGGCAAGA AAGATTTATT TGAGAGGTGG TCTCGGTGTT GGTGCTTTCC AGAGAATCTA TGGTGGAAGC AAGAGGAATG
GAAGCCGCCC ACCACATTTC TGCAAGAGCA GTGGTGCTAT TGCCAGACAC ATTCTGCAAC AGTTGGAGAT CATGAACATT
GTTGAGATTG ATACTAAAGG AGGTAGGAAA ATCACTTCTA GTGGTCGAAG GGATCTTGAC CAAGTTGCTG GGCGAATTGT
GGTTGCTGCT TGAACTTGTT ATTGAGAACC GATAATGCAT ACCCTAGGAT GGATGTTTGC TTATTAGTAG AATTGGCATC
AAAGAAAAAT TAAGTATTGT TTGCTGAGAA TTTTATAATT TGTTTTGTTA AATGTTGAAG CTTTTTCTAG TTTGGAGTTG
GAGTTTTGAT CTTTAAGGTT TTGATTCAAG TTCTCAATGT GTTATCTTCT CCAATCCCAT CATTATATTG AACCTCCCTG
TTCAACAGCC TTGTTCTTTC TCTATTGCAT TATTTCCCTA TTATAAGAAA ACATGTGAAA AAGAAGCCAA AGAATAAGAA
AAAAGACGAA C

>Vigan.11G054600.01
ATGGCAACAG CGAGGACTGT TAAGGATGTT TCGCCACATG ATTTTGTGAA GGCTTACGCA TCCCACCTCA AGCGTTCTGG
CAAGATGGAG CTTCCTGAGT GGACTGATAT TGTAAAAACA GCCAAATTTA AGGAACTGGC TCCATATGAT CCAGACTGGT
ATTACGTGAG AGCTGCCTCA ATGGCAAGAA AGATTTATTT GAGAGGTGGT CTCGGTGTTG GTGCTTTCCA GAGAATCTAT
GGTGGAAGCA AGAGGAATGG AAGCCGCCCA CCACATTTCT GCAAGAGCAG TGGTGCTATT GCCAGACACA TTCTGCAACA
GTTGGAGATC ATGAACATTG TTGAGATTGA TACTAAAGGA GGTAGGAAAA TCACTTCTAG TGGTCGAAGG GATCTTGACC
AAGTTGCTGG GCGAATTGTG GTTGCTGCTT GA

>Vigan.11G054600.01
MATARTVKDV SPHDFVKAYA SHLKRSGKME LPEWTDIVKT AKFKELAPYD PDWYYVRAAS MARKIYLRGG LGVGAFQRIY
GGSKRNGSRP PHFCKSSGAI ARHILQQLEI MNIVEIDTKG GRKITSSGRR DLDQVAGRIV VAA*