GBrowse Details

Vigan.11G010500.01

Basic Information:
Name: Vigan.11G010500.01
Multiple alignment
Variant Information
Position: Chr11:1052170..1056256 (- strand)
Length: 4087
Functional Information:
Description: Similar to Uncharacterized protein. [I1N727, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:82.92,68.06,21.14,23.65,30.28,39.85, 20.35,19.21
Automatic updates:
Name: NM_001255433 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100793209 (LOC100793209), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:1052170..1052553 (- strand)
Length: 384
Type: three_prime_UTR
Position: Chr11:1052554..1053072 (- strand)
Length: 519
Type: CDS
Position: Chr11:1054557..1054726 (- strand)
Length: 170
Type: CDS
Position: Chr11:1055267..1055366 (- strand)
Length: 100
Type: CDS
Position: Chr11:1055491..1055654 (- strand)
Length: 164
Type: CDS
Position: Chr11:1055801..1055841 (- strand)
Length: 41
Type: CDS
Position: Chr11:1056051..1056175 (- strand)
Length: 125
Type: CDS
Position: Chr11:1056176..1056256 (- strand)
Length: 81
Type: five_prime_UTR

>Vigan.11G010500.01 class=Sequence position=Chr11:1052170..1056256 (- strand)
ATCTAGGGTT TCTCTTTTTA CTTTTCTCAT TCTCGTTCTC TTTCGCTTTC GCTTTCGCAA GCTCTTCTGA ATTCGCAAGC
TATGGAATCT CCCGGTAACG AGCATGTGGT GGATGCCGCT GACCCCAACG ACGTCGTTAC ACCTTTCTCC CACAGAGAAG
AACCCCACAA TTCCCAACCC CTCACCGGCG ACGGTGCTAG TCCCGGGTAA TATGCCCTTT TCCATTTATT TATCGTAGTT
TCTTTTGTTT TTTCGGAAAT TTTTTAAATT GGAGCAATTC GGCAAACGCA GCTCATGAAA AGAACCAATC TTTCTTCACT
TCCTAGAAAA GGGTTTTCAA TTTGTTGGTA TTTAGATTAG ACGATAATAA TGTTCTTAGA TTTGGTTCTA ATTGCACTCG
ACCCATAATT TGCAGAAAGA TATTTATAGG TGGTTTAGCG AGAGAAACGA CCATTGGTTA GTGCTTGCTT TGCCTTTGTT
TATGATTATC GTAATTGTTA TTTTTGGGGT GTGGCAACCC TTTCTCTGAA TTGTGTGGAT TTGTAGCTTT GAGCATTGAT
TTCTCATAAC CTTACCCGTA TGACTTATGT AATTTGTTGC AGCTCAATTT ATCAAGCACT TTGGGAAATA TGGTGAGATC
ACGGATTCGG TCATCATGAA GGACAGGAAA ACTGGGCAAC CTCGCGGATT CGGGTTTATA ACGTACGCCG ATCCCTCGGT
GGTTGATAAA GTCATTGAGG ATCCTCACGT CATCAATGGA AAACAAGTAT GACTTGAATC TGATGATGTC TTGGCTAAGG
ATGTCATGTT ACCTGTTTTT TGTTTTGATT ATAGTGATTA GTGAATGGAT ACTTTGCTGG CTCTTATGGT TTTGGGATCA
TCATATATAG GTTGAGATTA AGCGGACGAT ACCAAGGGGA GCTGTTGGCT CTAAGGATTT TAGGACAAAG AAAATTTTTG
TAGGTGGAAT TCCTTCAAAT GTGACTGAAG GTAGGTTACC TCTTTAGTTA GCTAAATTCT TTGCTGCTTG ACTGAGGTGT
CAACAAGGGG GACACATTGC AACACCTTGA GAGAGCAACC TTCGAACTGA GGACAGTATG GGCATAAAAA TTTATCTAAG
TTTCAGATCC TAGAATTAAA TACTGTTTTT ATATTTGAGA GTACTGTTTA GGATCTGCAG AGGTTTACTC TGATATTATA
GACAGACAGA ACTCCCTTAT TGTGTTGTGC CTTGTATGTT CAAGTTTTCT TCTCCTAGAA ATTCTTATGA ATCACTTGGC
CACATGTAAT TTACATCTGT CCTGATGTGA ATGACGTGTT TTTATTTGTT TGACGGTGTG TAAGTAAATT GACTATTTTC
ATTATGATTC CCTTTTGTCC CTTTAAATCT GTGGTACAGT TTACTTTCAA CAGACTGTTA GACAGTGAAA CAGTTTTTGA
TTTTCAAAGT AACTCATTAA TCATTGAATA GTTTCAGTGA ACGACAGTTC CTTTGGTTGG TAGTTTTTAA TCAAAGATGC
ACTTGTGCAG ATGAATTCAG AGACTTCTTT ACTCGCTATG GTGAAGTAAA AGATCACCAA ATAATGCGGG ACCACTCCAC
CAACAGATCT CGTGGCTTTG GGTTTATAAC ATTTGATTCT GAAGAAGCAG TTGATGATCT TCTATCCATG GGGAACAAAA
TTGAATTTGC TGGAGCTCAG GTGAGGAATC TTTTACTAAA ACCGAGTACA TGTGTTACAT TGTTTTACTC TTGACTTGTG
TAACTGACAT CCAGATCCAG AGGGTTGATT GTATAAAATT TTAAATCTCT TGGCTGAAAG TTTATTTTGA ATCGAATTGA
AAATAGTGAA ATATTGGCAA CTTGATTTTG TTTGCGCCAT GAAATTTATA TTTTAGAGTT TGCCTTTGCA AAAAATATCT
TTTAAAGGTT TTAATCTTCA AGGTGGAGAC TCATTATTGG CTCTGATTCT CTTGTTCAAA GAATATAACT CATGAGTAAT
CTGTAACTTT AACTCTTAAT TTAATGAAAA TAATCAAGTA GCAATGATTT CTCACCTTTT ATTAAGTTCA ATGTACCAGT
TGCATTGTTC TGAAATCAAA TTATCGGATC CATAGTTCCA TATCATCATA TACTTATCTG TGTTTTAGTG AAAGTTATTG
CTCCGAGTAT CAAAGTAAAT ATTCTAACAA GAATCCACAT TGGAAATTAA TAAGGGTCAA CTGGTTGGCC AAATCAGTTA
TTTGCTGAGA CCTTGGAATA CTCTAGAAAG AAAATAGTGC TTATTGAAAA GGAAAAGGAG AGGAGTGAGA GATAACCAGT
TGGAAGAAAG GGCAAGGGAT CTGATATTTA GGCTTGGGAC TTTTCCCGTG CATTTTAATT TGTGTTCATG TAATTGTGTT
CTAATTTGAA CGGGGGAATA TCTGTTTGTG TTGCAATTTC TACCAGTGCC TCCAGAAGTC TGAGAGGGTT TGTCTTGGTT
TTTTGGATAA ATTTAGTTAA CTTATCTTAT TCTTCTTCAG GATAGGTATA CTTTGCTTTG AATAGTAAGC AAAAGCTGCA
GTAGAGAGTA AAATATATGG GAAGATAGTT CAAGCGTATT AATTAGAAAA ATCTACTATT CTTTTGTGAT TAACATGTAG
TTTTACCGAT ACATGATGCC ATCTTCAAGA GTATGTTGCC TTGAGTAGTA TATTAGCCTT ATCTGTCAAC CTTGATGATA
GAACTGATAT CATCCTTTAT TACTATCTGT ACACTAATCC CGTACCAACA TAGTAGGGAA TAGAAAAAGG AACAAAAGGA
GTTTTAGCAC AGCAATACAA CTGAGGTTAT TTGAGAGAAC CTCACTCTCC ACAATCCTCA CTAACCCAAA AAAAAAACTC
TCTATCCTCC TCCGTATTAA GACTTTATAA TAGTCTGTTA CAGCTATTTA ATTACAGCTG TACTAACTAC CTTGTCTTTT
CCTTCTTTTA TAAACTATAC CGAACCTATC ACTTGAAGTG GTGTTTCTTA GTGTGTGCAT GTTTGTTTTA CTACTGTATC
CTACTTCCAA ATACACGAAG TCATTGGCAT TCAAAGTATC TGGATGGATT TGCAATTTAA CAGATCAAGA ACCTTATTGA
AGCATTTTTT TCTATTTACA GTCTTTTTCA TCAATAAAGT AAACTTGTCA TTTTTCTTAT GTAGGTGGAA ATCAAGAAGG
CTGAACCAAA GAAGCCAAAC TCGGCACCTC CATCATCCAA GCGCTACAAT GACTCAAGAT CTTCATACGG TGGTGCTGGA
TATGGAGATG CCTATGATGG ATTTGGTGGC AATTTTGGAG TTGGGGGTGG TTATAGATCA GGTGGTGCTT ATGGTGGCGG
TAGGGGTGGT GCTTATGGTG CCTATGGAAG TGAATTTGGT GGTTATGGAG GATATGCTGG TGCGATGGGA CCATACAGAG
GAGATCCCTC CCTCGGTTAT GCTGGTCGAT ATGGTGGAAG CTTTAGTAGA GGGTATGATC TTGGTGGGTA TGGTGGACCT
AGTGAGAATT ATGGGGCATA TGGTGGGGGT GGTGGTTCTT CTGGTGGTGC TGGTGCCGGT GCCTATCAAA GTGGCTATGA
TGGCAGCCTA GGAGGTGGAT ATGGAGGGAC TAGTGGGGGT CCCTTCTATG GGAGCAGTAG AGGTGGTTAT GGTGCTGGCC
GATACCATCC TTATGGAAGA TAAGATTGGA TATCGAGCAT TTGTAGTCTA GGACTAATAT GTCTAGCATC AAAGCAAGTT
TGTAGTCTGT GTTTGGTTCA TCAGTTAGAT TACATGTTTT CTTTTCAAAA GAGAATTGCC AAGTATGCTT TCATTTATCA
GCACACCCAT TTCTTGGAAG TCTAAACAAA ATTTTCATTT GATCCCCCTT TGAAGTCTTT TTTTGTTCAT GTAAGCTGCA
AATTGTGCAG ATGTTTGTAT TCTCAATGTT ATTGTTGCTT TGTACCATTT CTTACTACCA TCTTTTTTTT ATGTTTTCGA
CTTGATTATA CCATGCTGGT CTATTTTTTT ATGCATGAAA AATTTGGGGA GTACATTGAG TTAGTTGATT TTATTGTTCA
ATATTAC

>Vigan.11G010500.01
ATCTAGGGTT TCTCTTTTTA CTTTTCTCAT TCTCGTTCTC TTTCGCTTTC GCTTTCGCAA GCTCTTCTGA ATTCGCAAGC
TATGGAATCT CCCGGTAACG AGCATGTGGT GGATGCCGCT GACCCCAACG ACGTCGTTAC ACCTTTCTCC CACAGAGAAG
AACCCCACAA TTCCCAACCC CTCACCGGCG ACGGTGCTAG TCCCGGAAAG ATATTTATAG GTGGTTTAGC GAGAGAAACG
ACCATTGCTC AATTTATCAA GCACTTTGGG AAATATGGTG AGATCACGGA TTCGGTCATC ATGAAGGACA GGAAAACTGG
GCAACCTCGC GGATTCGGGT TTATAACGTA CGCCGATCCC TCGGTGGTTG ATAAAGTCAT TGAGGATCCT CACGTCATCA
ATGGAAAACA AGTTGAGATT AAGCGGACGA TACCAAGGGG AGCTGTTGGC TCTAAGGATT TTAGGACAAA GAAAATTTTT
GTAGGTGGAA TTCCTTCAAA TGTGACTGAA GATGAATTCA GAGACTTCTT TACTCGCTAT GGTGAAGTAA AAGATCACCA
AATAATGCGG GACCACTCCA CCAACAGATC TCGTGGCTTT GGGTTTATAA CATTTGATTC TGAAGAAGCA GTTGATGATC
TTCTATCCAT GGGGAACAAA ATTGAATTTG CTGGAGCTCA GGTGGAAATC AAGAAGGCTG AACCAAAGAA GCCAAACTCG
GCACCTCCAT CATCCAAGCG CTACAATGAC TCAAGATCTT CATACGGTGG TGCTGGATAT GGAGATGCCT ATGATGGATT
TGGTGGCAAT TTTGGAGTTG GGGGTGGTTA TAGATCAGGT GGTGCTTATG GTGGCGGTAG GGGTGGTGCT TATGGTGCCT
ATGGAAGTGA ATTTGGTGGT TATGGAGGAT ATGCTGGTGC GATGGGACCA TACAGAGGAG ATCCCTCCCT CGGTTATGCT
GGTCGATATG GTGGAAGCTT TAGTAGAGGG TATGATCTTG GTGGGTATGG TGGACCTAGT GAGAATTATG GGGCATATGG
TGGGGGTGGT GGTTCTTCTG GTGGTGCTGG TGCCGGTGCC TATCAAAGTG GCTATGATGG CAGCCTAGGA GGTGGATATG
GAGGGACTAG TGGGGGTCCC TTCTATGGGA GCAGTAGAGG TGGTTATGGT GCTGGCCGAT ACCATCCTTA TGGAAGATAA
GATTGGATAT CGAGCATTTG TAGTCTAGGA CTAATATGTC TAGCATCAAA GCAAGTTTGT AGTCTGTGTT TGGTTCATCA
GTTAGATTAC ATGTTTTCTT TTCAAAAGAG AATTGCCAAG TATGCTTTCA TTTATCAGCA CACCCATTTC TTGGAAGTCT
AAACAAAATT TTCATTTGAT CCCCCTTTGA AGTCTTTTTT TGTTCATGTA AGCTGCAAAT TGTGCAGATG TTTGTATTCT
CAATGTTATT GTTGCTTTGT ACCATTTCTT ACTACCATCT TTTTTTTATG TTTTCGACTT GATTATACCA TGCTGGTCTA
TTTTTTTATG CATGAAAAAT TTGGGGAGTA CATTGAGTTA GTTGATTTTA TTGTTCAATA TTAC

>Vigan.11G010500.01
ATGGAATCTC CCGGTAACGA GCATGTGGTG GATGCCGCTG ACCCCAACGA CGTCGTTACA CCTTTCTCCC ACAGAGAAGA
ACCCCACAAT TCCCAACCCC TCACCGGCGA CGGTGCTAGT CCCGGAAAGA TATTTATAGG TGGTTTAGCG AGAGAAACGA
CCATTGCTCA ATTTATCAAG CACTTTGGGA AATATGGTGA GATCACGGAT TCGGTCATCA TGAAGGACAG GAAAACTGGG
CAACCTCGCG GATTCGGGTT TATAACGTAC GCCGATCCCT CGGTGGTTGA TAAAGTCATT GAGGATCCTC ACGTCATCAA
TGGAAAACAA GTTGAGATTA AGCGGACGAT ACCAAGGGGA GCTGTTGGCT CTAAGGATTT TAGGACAAAG AAAATTTTTG
TAGGTGGAAT TCCTTCAAAT GTGACTGAAG ATGAATTCAG AGACTTCTTT ACTCGCTATG GTGAAGTAAA AGATCACCAA
ATAATGCGGG ACCACTCCAC CAACAGATCT CGTGGCTTTG GGTTTATAAC ATTTGATTCT GAAGAAGCAG TTGATGATCT
TCTATCCATG GGGAACAAAA TTGAATTTGC TGGAGCTCAG GTGGAAATCA AGAAGGCTGA ACCAAAGAAG CCAAACTCGG
CACCTCCATC ATCCAAGCGC TACAATGACT CAAGATCTTC ATACGGTGGT GCTGGATATG GAGATGCCTA TGATGGATTT
GGTGGCAATT TTGGAGTTGG GGGTGGTTAT AGATCAGGTG GTGCTTATGG TGGCGGTAGG GGTGGTGCTT ATGGTGCCTA
TGGAAGTGAA TTTGGTGGTT ATGGAGGATA TGCTGGTGCG ATGGGACCAT ACAGAGGAGA TCCCTCCCTC GGTTATGCTG
GTCGATATGG TGGAAGCTTT AGTAGAGGGT ATGATCTTGG TGGGTATGGT GGACCTAGTG AGAATTATGG GGCATATGGT
GGGGGTGGTG GTTCTTCTGG TGGTGCTGGT GCCGGTGCCT ATCAAAGTGG CTATGATGGC AGCCTAGGAG GTGGATATGG
AGGGACTAGT GGGGGTCCCT TCTATGGGAG CAGTAGAGGT GGTTATGGTG CTGGCCGATA CCATCCTTAT GGAAGATAA

>Vigan.11G010500.01
MESPGNEHVV DAADPNDVVT PFSHREEPHN SQPLTGDGAS PGKIFIGGLA RETTIAQFIK HFGKYGEITD SVIMKDRKTG
QPRGFGFITY ADPSVVDKVI EDPHVINGKQ VEIKRTIPRG AVGSKDFRTK KIFVGGIPSN VTEDEFRDFF TRYGEVKDHQ
IMRDHSTNRS RGFGFITFDS EEAVDDLLSM GNKIEFAGAQ VEIKKAEPKK PNSAPPSSKR YNDSRSSYGG AGYGDAYDGF
GGNFGVGGGY RSGGAYGGGR GGAYGAYGSE FGGYGGYAGA MGPYRGDPSL GYAGRYGGSF SRGYDLGGYG GPSENYGAYG
GGGGSSGGAG AGAYQSGYDG SLGGGYGGTS GGPFYGSSRG GYGAGRYHPY GR*