VIGGS:GBrowse

Vigan.11G003800.01

Basic Information:

Name:	Vigan.11G003800.01 Multiple alignment Variant Information
Position:	Chr11:459362..460121 (- strand)
Length:	760

Functional Information:

Description:	Similar to Heavy metal transport/detoxification superfamily protein. [XP_007033097.1, Theobroma cacao]
GO:	Biological Process: metal ion transport (GO:0030001)
GO:	Molecular Function: metal ion binding (GO:0046872)
InterPro:	Heavy metal-associated domain, HMA (IPR006121)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.44,6.58,0.08,0.00,149.22,0.00,13.22,0.11
Arabidopsis thaliana homolog:	AT5G17450.1

Automatic updates:

Name:	NM_001252877 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100815905 (LOC100815905), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:459362..459651 (- strand)
Length:	290
Type:	CDS

Position:	Chr11:459900..459975 (- strand)
Length:	76
Type:	CDS

Position:	Chr11:460050..460121 (- strand)
Length:	72
Type:	CDS

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.11G003800.01 class=Sequence position=Chr11:459362..460121 (- strand)
ATGGGTGCAC TTGATTACCT CTCCCACTTT TGCACTGTAA CCACCACTAG GACCAAGCAC AAACCAATGC AGGTAACAAC
TTCTTCCTTC ACCTTGCTCC TCTCATCTAC TCACATGCGT TGAGTTGCTT TAAATGTTAA TTTCAGACAG TTGAGATCAA
AGTGAGAATG GACTGCGATG GTTGCGAAAG AAGAGTCCGA AATGCAGTCA CTTCACTAAA AGGTGATGCT AATTATAAAT
ATATACAACA TTTTCTTCTG TTTGCTGCAA TACACACAGT GTTTGATATG CATGTTCCAA AGCAAGAGGA GTTAATACAT
ATCTCTTATA TATCTTCTGT TGTTTTCAGA AGTTTCAAAT CAACTAGAAC GTGATTTATA ATGTATATAA TATATATAAG
AAATCTAGTT TCTAACATAG TATCATAGTG ATGATATAAA GTTTAAAAAT TTATTGTTTG TTGGATGTAG GGGTGAAATC
TGTGGAGGTG AACAGAAAGC AGAGCAGGGT GGTTGTGAGC GGATACGTGG ATCCAAACAA GGTGTTGAAG AGGGTAAGGA
GCACAGGGAA GGTGAGAGCT AAGTTTTGGC CATATGTGGA GCAGCATCTT GTGTACTATC CATATGCCAC AGGAGCATAT
GACAGAAGAG CACCTTCTGG ATATGTCAGA AACGTTGTGC AGGCCTTTCC AGATCCTCCC CAAGACAACT TTCTCTCCTT
CTTCAGTGAT GACAACGTCC ATGCATGTTC CATCATGTAA

[show][hide][copy]TRANSCRIPT

>Vigan.11G003800.01
ATGGGTGCAC TTGATTACCT CTCCCACTTT TGCACTGTAA CCACCACTAG GACCAAGCAC AAACCAATGC AGACAGTTGA
GATCAAAGTG AGAATGGACT GCGATGGTTG CGAAAGAAGA GTCCGAAATG CAGTCACTTC ACTAAAAGGG GTGAAATCTG
TGGAGGTGAA CAGAAAGCAG AGCAGGGTGG TTGTGAGCGG ATACGTGGAT CCAAACAAGG TGTTGAAGAG GGTAAGGAGC
ACAGGGAAGG TGAGAGCTAA GTTTTGGCCA TATGTGGAGC AGCATCTTGT GTACTATCCA TATGCCACAG GAGCATATGA
CAGAAGAGCA CCTTCTGGAT ATGTCAGAAA CGTTGTGCAG GCCTTTCCAG ATCCTCCCCA AGACAACTTT CTCTCCTTCT
TCAGTGATGA CAACGTCCAT GCATGTTCCA TCATGTAA

[show][hide][copy]CDS

>Vigan.11G003800.01
ATGGGTGCAC TTGATTACCT CTCCCACTTT TGCACTGTAA CCACCACTAG GACCAAGCAC AAACCAATGC AGACAGTTGA
GATCAAAGTG AGAATGGACT GCGATGGTTG CGAAAGAAGA GTCCGAAATG CAGTCACTTC ACTAAAAGGG GTGAAATCTG
TGGAGGTGAA CAGAAAGCAG AGCAGGGTGG TTGTGAGCGG ATACGTGGAT CCAAACAAGG TGTTGAAGAG GGTAAGGAGC
ACAGGGAAGG TGAGAGCTAA GTTTTGGCCA TATGTGGAGC AGCATCTTGT GTACTATCCA TATGCCACAG GAGCATATGA
CAGAAGAGCA CCTTCTGGAT ATGTCAGAAA CGTTGTGCAG GCCTTTCCAG ATCCTCCCCA AGACAACTTT CTCTCCTTCT
TCAGTGATGA CAACGTCCAT GCATGTTCCA TCATGTAA

[show][hide][copy]PROTEIN

>Vigan.11G003800.01
MGALDYLSHF CTVTTTRTKH KPMQTVEIKV RMDCDGCERR VRNAVTSLKG VKSVEVNRKQ SRVVVSGYVD PNKVLKRVRS
TGKVRAKFWP YVEQHLVYYP YATGAYDRRA PSGYVRNVVQ AFPDPPQDNF LSFFSDDNVH ACSIM*