GBrowse Details

Vigan.10G242200.01

Basic Information:
Name: Vigan.10G242200.01
Multiple alignment
Variant Information
Position: Chr10:28274779..28280408 (+ strand)
Length: 5630
Functional Information:
Description: Similar to Uncharacterized protein. [I1LFT3, Glycine max]
InterPro: SNARE associated Golgi protein (IPR015414)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.36,23.22,25.71,23.39,22.37,12.79, 19.84,23.48
Arabidopsis thaliana homolog: AT1G05360.1, AT4G14950.1
Automatic updates:
Name: NM_001255200 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuole membrane protein 1-like (LOC100810304), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255200 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuole membrane protein 1-like (LOC100810304), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:28274779..28275089 (+ strand)
Length: 311
Type: five_prime_UTR
Position: Chr10:28275090..28275147 (+ strand)
Length: 58
Type: CDS
Position: Chr10:28275967..28276178 (+ strand)
Length: 212
Type: CDS
Position: Chr10:28276421..28276499 (+ strand)
Length: 79
Type: CDS
Position: Chr10:28276774..28277073 (+ strand)
Length: 300
Type: CDS
Position: Chr10:28278142..28278278 (+ strand)
Length: 137
Type: CDS
Position: Chr10:28278747..28278863 (+ strand)
Length: 117
Type: CDS
Position: Chr10:28279491..28279670 (+ strand)
Length: 180
Type: CDS
Position: Chr10:28279836..28280015 (+ strand)
Length: 180
Type: CDS
Position: Chr10:28280016..28280408 (+ strand)
Length: 393
Type: three_prime_UTR

>Vigan.10G242200.01 class=Sequence position=Chr10:28274779..28280408 (+ strand)
TTACTCATGA GGAGGGAAGA GATTCATTAT ATTTGGGAGG GGAATAGGAC GAAGTGGATG AGAGTGTGCG TAACAAACTA
AATTAGGGCT ACCCGATCTT CACGCAAACC ACCACTCTGA TTTTAATTTT CTAGATCTGC AGATTCCGCT GAAATCATTT
CGAAGCCTAT CCAAATTTTT AGCTTTCAAT TTTATTTTTG TGTATCTTTT CTGAATCAGA GTGTTGATTC CAATTGGGGT
GCTGCAAAAC TAGAGCGTAG ATAGAGAAGG GTATACAAAG CAGAGTTTCC CCTCTTAGCA TGTGAGCAAT AATGGGCTCT
GGAAATATAG TATCTTCTTC TTCCGGGCGC CCTGATTTGT CTATCTCTGG CAAGTCTTTT GTTTTTTTTT CTTGCTTTTA
ATGCTCTGCG TTTATTTGAT TCTTCTTTTA CCCTTTCTTA CTGTATCGGA TTTTCATTAG TATAGTCGTT CCCCTTCTTT
TATATATGTG GGTATCAATT CCCAGACCCC GGGTTGTGGA TCTGTGGATT TATTTGTGAT CCTGTATGGT GAATTATGGG
AAGGTTTCCA GTTGTTTAGT TTTCAGTGTC TCGGTTTCCT GTTAATTTGA ATAGGCTAAG GGGAAAGTGA GTGGACAGAG
ATGATTCATC AAGTGTTTGT CTTTTTTTAA AAGGTGGTCT GGCCAGTAGA GAACTGGACT GCCCCACTTA CTGCTCTATA
ATATATACAA TTTGGCATTT CGGGAACCAT CCATGTTTTG ATGTATTGTC TGTTTTCTGG GCGTGGAAGG GTGCAGCGAG
GCAATTCATT GGTCTATTTG GTTAATGTGG ATTTTTGAAG CATTGGATTT CTCGAAAGGG GTTTTGGGGC TATAAGTTGT
CATAATTCTA TGTTAAGATT GAATTCCTCA ATTAGTTTTG CAAATATAAA ATTTGTTATT CTGTTATATT ACAAAAAAGT
TGGAGCCCGG GGAAGAAGAG GAGTCGTGCC TGGTATGAGG CAAAGACATT TGACAATTTG AACAGAAACA TATTGCCATA
GTTTTTGGCG TGATGTTGGT TAATCTGATG TCTATATTTC TTGAAATATT GAATTTAGCC TATTTTGCAG ACATGCTATT
ATGATTTAAA TTCTTACAAT AAGTTTTGTT ATATCACATA TGCTGATTTA AAAATCTGTA TTTTGCAGAG CTACGTGAGA
AGTACGAGTT GGAGCTAGAA AATTTGACTC TGACCGCACA ACCCTTTAAA ACATTGAAAT TCTTCACGTT AGCTGTTATT
CAATGCATCA AGAAAACAAC ATTATATCTA TTGGCAAAAG GTGGGTGGGT TATGCTTTTC AGTGTTGCGG TTGGGATTTT
TGGCATAGTG CTCATGACCC TCGGTGGACT CCAAGAGAAG GTATTTTTAT TCAGTCTGTA CAATATATTG ATAGTTCTGG
AGCAAAGAAC TCTCCGTTTA TGATTCTTTT TGGCTAGTGT GTGCTACTTA CCTTGGTAGC ATATGTCTAT ATGAAGGATA
ATTTTTTCTT TTAATTTCAG CCATATGATA CACATGTGAA GTTGACATTC ATTTTTTAGG TAGCTCTTTT GTTCATTTTT
TTTAGATAAT TGGACTTCAC AAATGCTTGT TCTTTTGTGC AGCATCTTGA GGAGCTTCTT GAATATTTTC GCTTTGGACT
GTGGTGGGTG GCCCTTGGCG TTGCTTCTTC AATTGGTCTT GGTAAGCAAA ATAAGTAATC CTATGGTCAG ATATGGTTCC
TAATTGTGTG ATACGGGGTT TACTACTTAT TAGGTTAACG TGGTTTGTCT TGTACATCTT GTTGATTTGA ACTTAAAGAA
AAGCAATTGC TTGTAATATA GATTTTACTC TCATAATTGT AAGGATCATG ATTCTTTGCC ATCATCTTGA TCAAGGGCAA
TGTAGTCCCT GAGTTTTCAT TTTCATTATT ACACATCCAC ATTAAATTGT TCTTTTATCC TTTTATTTGG TTCAGGATCT
GGTTTGCACA CATTTGTCCT ATATTTAGGT CCACACATAG CATTGTTCAC AATAAAAGCA GTGCAGTGTG GCCGAGTTGA
TCTGAAAAGT GCTCCATATG ATACAATACA ATTAAAACGA GGTCCTTCTT GGCTTGATAA AGACTGTTCT GAGTTTGGGC
CACCATTATT CCAGTCAGTC TATGGTTCAC AGGTTCCTCT TAGCAGCATT TTGCCTCAAG TTCAGCTGGA GGCTATTTTA
TGGGGTATGG GAACAGCAAT AGGCGAGCTT CCTCCTTATT TTATATCCAG GGCAGGTACA ATGTGTCTGG CTTTTTCACT
GTTGTTCCCT TACTCTAATA AAGTCATTGT TAATTTGATA GAATAGTCTG ATCATAATCC TATACTATTG AGAAAAATGC
TTACCATCTG ATATTATTCT GTGGTGTAGT TACTATAATC CTCTATGGGT GGAAAAGAAA AAGAAAATTT ATGAATAGTT
TCCAGGAAAT GAAAAACTGA TTGACTATTA TTTAAATATT ATTGGTATTT TTCCGAAGCA AAAGTCAATT CCAGCATTTG
AATTTTATTT TTCGTAATGG TTATCTACAT AATGCAAGTG ATTGCTAATT AGGGTCAACT TTACATTCAA AGCTCACAAA
TATTTTTTTT CTTCATGTGG CCTGGGAATA ATGCATCATG TTGCTTAGTA TTTTAAAATG AACGAAATAG CCACTCTTGA
GGCTTTGCAA TATTGTTAGA AAGTTTGGGT CTTAAACAAA TTGTTAATAA AATTAGGTAA AATGGGAATA ACTATTAGAT
GAAACAAATT GAAGAATTTG GCCATGTTTG TAGTTGGAGA TCATGAATAC ATCCTAATAT TTGCACGTGA GTTTAGTGAT
ATTTATAACT GCGTCTACTT TAGTTTTGGC CATATAGGCC ATTCAACTAA TCTTATAGTC TCTTAATGAC ATGAGTTGTG
ACTTACTGTA TGTATCTCAG TATTCTCCAA TATGTCTACA AAGAATTTTT GGCTCCAAAC TGCACAGTGA ACAAATTTTG
GATTTGGTAT GTTGAAACAT GAAACTATTT CAAACAAAAG CAGTTATAAT AATGGATTAT TGAAATATCT TCTTTCGTAT
GTTATCCTCA GGCATACTTG ATGTAATTTT AGTCAGTTAT CAAAAACTCT CATTTGAATA AAGTGCTTTT TAATCCCAAG
TTTTAAATAT CTGATGTACA TCCTTTTTTT TTTATTTACC TTAATTTCCA GTGTCCATCT TTAGCTGGCT GATGAATTAA
TTCATTTTTC AGTAGTTGGT GCTTATTAGT TATTTTATTT ACAAATTGGT TTGTACAATA TTCTAATTAA ATTATTGATG
CAGCAAGCTT GTCTGGGAGC AGAGTGGATG CAATCGAAGA ATTAGATAGT GATGATAAAG GAGTCTTGAA TAGAATCAAG
TGCTGGTTTC TTTCACACTC GCAACATTTG AATTTTGTTA CTATTCTAAT ACTTGCTTCG GTTAGTATAG ACTTCATGCT
TCATTTCCAG TATTATTCTA TGCTTATATG TTTATATTTT CCTCTGGGTA TATGAAGTAG AATATTCTTT AGTGTAAGTT
TGGCAGGACA ACTTTTGCTA GTTAGTCAAA ATCTTAACTC AATAGTTCTG TTTTTCCTCT TAAGGTTTCT CTGTTGTGAT
CCTGCAGTAT GCACAAGTCT CATCACTGTA ACTGACTGCT AATTGGATTA TGCATTTTCA TAATCCATAG AATGTTATTG
AACACTATGC CAATTAATTA AGTATCAGGG TATTGTGGTG CATGTTTTAA GTTTTGCCAC TTCTCTTGGT ATATAGTATG
GGATTTCGAA AACATGTTAG CTTCTAGCAA TTCCTTTATT CTGAGGTCCA TCCTGCTCAA TAAAAATATC ATTTATTATA
TATACCATAT CAACTTGTAA ACAGCTATTT ACTGAGATTA CATTTCAGGT TCCAAATCCT TTATTTGACC TTGCTGGCAT
CATGTGTGGA CAATTTGGCA TTCCATTTTG GAAATTTTTT CTTGCAACAT TGATTGGAAA GGCAATTATT AAAACTCACA
TACAGGTTTG TATTTAACCT TTTCTTAGGT GATTTTATGG TATTGTAGAC AAGGGAATGG TTTGTGATTG TGGGAGAAGC
CTGAATCTCT TTTTATATTG TATATATACA CTCGTTGTGC AAATTTCCAA GTTGGTCTTT CCCATCAATA TTTATATTTA
TTAAATAAAT ATTGTAAACA CAATATTGTT TATTTGATTT TGTGATTACT ATTGACCTAC GTGGTGAACT CTCTAATGAT
TTAACACCAT TACCTGACTT TTTTGTGACC CGGCAAATAA GCAAATGGGA GGGTAGATTA ATAGTTGAAT AAAAAGAAAA
CATTTCAGTA CTTCTAAAGA TAAAAGTATC GTCATTTTGA TCTTCTAAAT AAATACATTG AAATAGTACT TCAATGCCAA
TTTTGCCTCA AATTAGTCCT CTAAAAGAAG CAATTTGTTG TGAAATTTTG ACATCTGAGA ACCATGTTTA TGTATTTATT
GTTAGAGAAC CAGATTAATG GTGCCTGTCA ATTTGGCGTA CCTGAATAAG TGAACAAGTT CTTACACTTC CATTAAAAAA
ATCATTCAGA CACATTTAAG CCTTGTACAT CTACAAATTC TGATGGATCT TGTATGTCTA TTCTTTTTGC AGACGCTATT
CATCATCTCA GTTTGCAACA ATCAACTTCT TAACTGGATT GAGAATGAAT TTATTTGGGT TCTCAGTCAC ATACCTGGTT
TTGCATCCGT CTTGCCTAGA GTGACTGCCA GTCTCCATGC GATGAAAGAT AAGTATTTGA AAGCTCCCAA TCCAGCTTCC
CCAAATAAGC AGGTACCTAT TAACTGTAAT ATGACTTATT TATCAACGCT TATACTTTGA TTTGACCGTT AAATTCCTCA
ATATTGAGTT ACGACCTCGA AGTGGTGTGG ATGTCTCCGA TGTATTTCTA ATTTGTGCTA CTTCGTGTTC TTGAAATCAT
CTCATGTTCA TCTGCAGGGG AAAAAGTGGG ATTTTTCTTT TTCTTCAGTC TGGAACACTA TCGTGTGGCT CATGCTTATG
AACTTCTTTG TTAAGATAGT GAATGCAACT GCCCAGAATC ATCTGAAGAA ACAGCAGGAG AAACATATTT CTGAATTAAC
GGAAAAGTCT ACCCCAACAG ACTCAGGCGT ACAATGAATT GTTTATGTTC TGCTTGTGTC GCCCTTTTTT TAGCGGTTCC
TTCTGCAAGC AGAAAATTGA AATTCAAATT ACAGCAATTT CTTTTGGCCC CACAGAAGTT ACCCTGAAAA TCTGCATTAG
AGGTCCTGCC AGGAGCTTCT TTAGGAATGA ATATACACAG TAGGCAACTA AAGTTGCAAC TTTATTTTAA TTTGGGGCGA
CCATTGGATT TTAGCTTTAA CCCTTATTAA TTATTTGCTG CTCTAATGGA ATTATAAGAG TTCTATTCTT TTGCATTAGT
AAGACAAATT ATTAGTTCCT ATCTCTGGTA AACAACAAAT TGTTCCCTTT CTCTCTTGCC CTATCGCTTG GTTTTAATCG
TTATAGTTGC CCGCTTCAAA TAATGCATCG 

>Vigan.10G242200.01
TTACTCATGA GGAGGGAAGA GATTCATTAT ATTTGGGAGG GGAATAGGAC GAAGTGGATG AGAGTGTGCG TAACAAACTA
AATTAGGGCT ACCCGATCTT CACGCAAACC ACCACTCTGA TTTTAATTTT CTAGATCTGC AGATTCCGCT GAAATCATTT
CGAAGCCTAT CCAAATTTTT AGCTTTCAAT TTTATTTTTG TGTATCTTTT CTGAATCAGA GTGTTGATTC CAATTGGGGT
GCTGCAAAAC TAGAGCGTAG ATAGAGAAGG GTATACAAAG CAGAGTTTCC CCTCTTAGCA TGTGAGCAAT AATGGGCTCT
GGAAATATAG TATCTTCTTC TTCCGGGCGC CCTGATTTGT CTATCTCTGA GCTACGTGAG AAGTACGAGT TGGAGCTAGA
AAATTTGACT CTGACCGCAC AACCCTTTAA AACATTGAAA TTCTTCACGT TAGCTGTTAT TCAATGCATC AAGAAAACAA
CATTATATCT ATTGGCAAAA GGTGGGTGGG TTATGCTTTT CAGTGTTGCG GTTGGGATTT TTGGCATAGT GCTCATGACC
CTCGGTGGAC TCCAAGAGAA GCATCTTGAG GAGCTTCTTG AATATTTTCG CTTTGGACTG TGGTGGGTGG CCCTTGGCGT
TGCTTCTTCA ATTGGTCTTG GATCTGGTTT GCACACATTT GTCCTATATT TAGGTCCACA CATAGCATTG TTCACAATAA
AAGCAGTGCA GTGTGGCCGA GTTGATCTGA AAAGTGCTCC ATATGATACA ATACAATTAA AACGAGGTCC TTCTTGGCTT
GATAAAGACT GTTCTGAGTT TGGGCCACCA TTATTCCAGT CAGTCTATGG TTCACAGGTT CCTCTTAGCA GCATTTTGCC
TCAAGTTCAG CTGGAGGCTA TTTTATGGGG TATGGGAACA GCAATAGGCG AGCTTCCTCC TTATTTTATA TCCAGGGCAG
CAAGCTTGTC TGGGAGCAGA GTGGATGCAA TCGAAGAATT AGATAGTGAT GATAAAGGAG TCTTGAATAG AATCAAGTGC
TGGTTTCTTT CACACTCGCA ACATTTGAAT TTTGTTACTA TTCTAATACT TGCTTCGGTT CCAAATCCTT TATTTGACCT
TGCTGGCATC ATGTGTGGAC AATTTGGCAT TCCATTTTGG AAATTTTTTC TTGCAACATT GATTGGAAAG GCAATTATTA
AAACTCACAT ACAGACGCTA TTCATCATCT CAGTTTGCAA CAATCAACTT CTTAACTGGA TTGAGAATGA ATTTATTTGG
GTTCTCAGTC ACATACCTGG TTTTGCATCC GTCTTGCCTA GAGTGACTGC CAGTCTCCAT GCGATGAAAG ATAAGTATTT
GAAAGCTCCC AATCCAGCTT CCCCAAATAA GCAGGGGAAA AAGTGGGATT TTTCTTTTTC TTCAGTCTGG AACACTATCG
TGTGGCTCAT GCTTATGAAC TTCTTTGTTA AGATAGTGAA TGCAACTGCC CAGAATCATC TGAAGAAACA GCAGGAGAAA
CATATTTCTG AATTAACGGA AAAGTCTACC CCAACAGACT CAGGCGTACA ATGAATTGTT TATGTTCTGC TTGTGTCGCC
CTTTTTTTAG CGGTTCCTTC TGCAAGCAGA AAATTGAAAT TCAAATTACA GCAATTTCTT TTGGCCCCAC AGAAGTTACC
CTGAAAATCT GCATTAGAGG TCCTGCCAGG AGCTTCTTTA GGAATGAATA TACACAGTAG GCAACTAAAG TTGCAACTTT
ATTTTAATTT GGGGCGACCA TTGGATTTTA GCTTTAACCC TTATTAATTA TTTGCTGCTC TAATGGAATT ATAAGAGTTC
TATTCTTTTG CATTAGTAAG ACAAATTATT AGTTCCTATC TCTGGTAAAC AACAAATTGT TCCCTTTCTC TCTTGCCCTA
TCGCTTGGTT TTAATCGTTA TAGTTGCCCG CTTCAAATAA TGCATCG

>Vigan.10G242200.01
ATGGGCTCTG GAAATATAGT ATCTTCTTCT TCCGGGCGCC CTGATTTGTC TATCTCTGAG CTACGTGAGA AGTACGAGTT
GGAGCTAGAA AATTTGACTC TGACCGCACA ACCCTTTAAA ACATTGAAAT TCTTCACGTT AGCTGTTATT CAATGCATCA
AGAAAACAAC ATTATATCTA TTGGCAAAAG GTGGGTGGGT TATGCTTTTC AGTGTTGCGG TTGGGATTTT TGGCATAGTG
CTCATGACCC TCGGTGGACT CCAAGAGAAG CATCTTGAGG AGCTTCTTGA ATATTTTCGC TTTGGACTGT GGTGGGTGGC
CCTTGGCGTT GCTTCTTCAA TTGGTCTTGG ATCTGGTTTG CACACATTTG TCCTATATTT AGGTCCACAC ATAGCATTGT
TCACAATAAA AGCAGTGCAG TGTGGCCGAG TTGATCTGAA AAGTGCTCCA TATGATACAA TACAATTAAA ACGAGGTCCT
TCTTGGCTTG ATAAAGACTG TTCTGAGTTT GGGCCACCAT TATTCCAGTC AGTCTATGGT TCACAGGTTC CTCTTAGCAG
CATTTTGCCT CAAGTTCAGC TGGAGGCTAT TTTATGGGGT ATGGGAACAG CAATAGGCGA GCTTCCTCCT TATTTTATAT
CCAGGGCAGC AAGCTTGTCT GGGAGCAGAG TGGATGCAAT CGAAGAATTA GATAGTGATG ATAAAGGAGT CTTGAATAGA
ATCAAGTGCT GGTTTCTTTC ACACTCGCAA CATTTGAATT TTGTTACTAT TCTAATACTT GCTTCGGTTC CAAATCCTTT
ATTTGACCTT GCTGGCATCA TGTGTGGACA ATTTGGCATT CCATTTTGGA AATTTTTTCT TGCAACATTG ATTGGAAAGG
CAATTATTAA AACTCACATA CAGACGCTAT TCATCATCTC AGTTTGCAAC AATCAACTTC TTAACTGGAT TGAGAATGAA
TTTATTTGGG TTCTCAGTCA CATACCTGGT TTTGCATCCG TCTTGCCTAG AGTGACTGCC AGTCTCCATG CGATGAAAGA
TAAGTATTTG AAAGCTCCCA ATCCAGCTTC CCCAAATAAG CAGGGGAAAA AGTGGGATTT TTCTTTTTCT TCAGTCTGGA
ACACTATCGT GTGGCTCATG CTTATGAACT TCTTTGTTAA GATAGTGAAT GCAACTGCCC AGAATCATCT GAAGAAACAG
CAGGAGAAAC ATATTTCTGA ATTAACGGAA AAGTCTACCC CAACAGACTC AGGCGTACAA TGA

>Vigan.10G242200.01
MGSGNIVSSS SGRPDLSISE LREKYELELE NLTLTAQPFK TLKFFTLAVI QCIKKTTLYL LAKGGWVMLF SVAVGIFGIV
LMTLGGLQEK HLEELLEYFR FGLWWVALGV ASSIGLGSGL HTFVLYLGPH IALFTIKAVQ CGRVDLKSAP YDTIQLKRGP
SWLDKDCSEF GPPLFQSVYG SQVPLSSILP QVQLEAILWG MGTAIGELPP YFISRAASLS GSRVDAIEEL DSDDKGVLNR
IKCWFLSHSQ HLNFVTILIL ASVPNPLFDL AGIMCGQFGI PFWKFFLATL IGKAIIKTHI QTLFIISVCN NQLLNWIENE
FIWVLSHIPG FASVLPRVTA SLHAMKDKYL KAPNPASPNK QGKKWDFSFS SVWNTIVWLM LMNFFVKIVN ATAQNHLKKQ
QEKHISELTE KSTPTDSGVQ *