GBrowse Details

Vigan.10G230000.01

Basic Information:
Name: Vigan.10G230000.01
Multiple alignment
Variant Information
Position: Chr10:27440732..27444116 (- strand)
Length: 3385
Functional Information:
Description: Similar to Cytochrome c. [G7K7W9, Medicago truncatula]
GO: Molecular Function: iron ion binding (GO:0005506)
Molecular Function: electron carrier activity (GO:0009055)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome c, class IA/ IB (IPR002327)
Cytochrome c domain (IPR003088)
Cytochrome c-like domain (IPR009056)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:31.75,25.98,65.47,16.32,18.97,28.58,11.76,12.40
Automatic updates:
Name: NM_001248283 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305937 (LOC100305937), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251212 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499929 (LOC100499929), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:27440732..27441578 (- strand)
Length: 847
Type: three_prime_UTR
Position: Chr10:27441579..27441674 (- strand)
Length: 96
Type: CDS
Position: Chr10:27442438..27442571 (- strand)
Length: 134
Type: CDS
Position: Chr10:27443798..27443909 (- strand)
Length: 112
Type: CDS
Position: Chr10:27443910..27444116 (- strand)
Length: 207
Type: five_prime_UTR

>Vigan.10G230000.01 class=Sequence position=Chr10:27440732..27444116 (- strand)
CAACGAAAAA AGTTAGGGCT GGCCAAAGAG TCCCGTGGCG ACCGCGTTCC AAATTTGCCA CCCTGCCGCC TCATTTTCTC
CTATATATAT AAATAGAGTC ATGCATAACG CATTGCATGT CTTCCGAATA GTTCATTCCT TTCTACTTTT CCGCGTAATT
CTCCTTTTCC CTTCGATTCT GTCAAACCTA TTCACCTTCC TCCGCGAATG GCGTCCTTCG ATGAGGCTCC TCCCGGCGTT
GCCCAGTCCG GCGACAAAAT CTTCAGGACT AAGTGCGCTC AGTGTCACAC CGTCGAAAAA GGTGCCGGTC ACAAGCAAGG
TTAGCGCTCT CTATTATTAT TATTTCTCCT TATTAATGTT TTTTTTAATC GCTCTATGGT TTTCTCCTTT TACCTTTCGT
TATTGGTTCG ATCTACGTGT GTTTTGTTTA GTGCGAGCGT AATAAGGCGT AGATCTAGAA ATCGCGCTGT GGATTTATTT
GCTGGTTGAT TCATATCTTT TTCACACGTT ATGTGATTTG TGTAGTAATC TGTAATTTTT GTTGTGCCTT GTGGATGCAC
GTATAACTTG TTTCTTAAGA ATCATGCGTG TAAATATTCG ATTTAATTCT GCCTATTGCC TTCGTTAGTC GTGGACACCT
TGGTGGAAAC CGAGCAGAGG CAATCTACTG CTCGTTGGTG AGTAGCACTT TCAGGTCGAT AGTAACTGTG TAATCGTATT
GGATTCCTCG ATTGAAAAAG TAATTATTCC TGTTTGATTT AAGCTAATGA TTGAATGCTT GTTGATTCAA GGATTTAGTG
GATTTTGACA TGGAATGAAT ATATTATTCG TCCTCGTCGT TGAAGAAATA TGAGGGGAAT TCCATTTCCG AAGCTTAGGA
ATTGAAGATG AGTCCTCATG TTGTTTTGTA CTTGTTTTTT TGGTGTGTTA ATGATTGGGC GAATAGAAGA ATTATGCTTT
CCTGAAGCAC AACCCAAATT GGTTTGGAAC AATTTATGAA TTTAACGGCG ATTAGAGAGC AAGTAATTGA GATATTTAAC
ATTTTGAATT ATTATTTTTT GGTTTACTGG TACCAAACAA TATGTATTTT GGTTTGAGAA AACTTTTTAG ATGATCTGTG
GGCTATGTTA AACATGAGCA TATTGCTTAC GACTTTACAC ATGTCCAAGT ATGTTTTCCA TGCCTAACGA GGAAAGCTCC
CACTCAAAAA ACCGAATTTC CCTCGTTCAT GATGTGACTT TTGACCAAAT TTGATTTCAA TGGGTGGCCT AGGACCTTTA
GGTGTTATGC CCTTGTAGTT TTTAAAACAA AAAGGAGAAT GAAAATCACT TGCAGGGACA AAGTTGTTGG TAAATTTATT
GCTATCCAGT TTACTTGTGA ATTCTCTTTT TTAAAAATCG GATCATTGTC ACTGATTTAT ACATTGCTTC CTTGGAACTC
ATTTCATAAC ATTCTTTTAC CGGTTATAAC TATTTTTGTG TTGCTTTCAC ACTCTGGAAT ACTGTTGTTA TTTATGCTAA
TATTTTCCCT TTCGGACAAT CTCAGGTCCC AATCTGAATG GGCTGTTTGG AAGGCAATCA GGCACTACTC CCGGATATTC
CTACTCTGCA GCTAATAAGA ACATGGCCGT AACTTGGGAA GAAAAGACAC TATACGATTA TTTACTTAAC CCCAAAAAGG
TAAAACACAA ATTGTAGTAT TTCTATATGA ACGGCTATTA ATTACTGATC ATCCATATGT GAGATATGCT TCACTAATGT
TCTCCTTGAA CTGGATAGAT AGAGTGGTGG GCAAGGGTGG ACACCCTGAC CCCCTCTCTG TAGATATCTC GTTTAAAATC
AAGTGTGACA ATTTTATTTT TTATTTAAAA TTACACACTA TATTACGTTA ATTCAAACTT TCTACCTTTA TAAATGTGCA
ATGATTTTTG ACGCAGCGTA GCTTGCTAAT AGTTGTTTCA AACAAATTAT TTCTGCAATT CAATTCTTAA TTTCAAAATT
TTAGTATCTT TGATTCGTAG ATATGAAATA AAATCAAAAT TATTACAATG AGGGTAATTT CTATTGTACT GTGTTATTTA
TTAATTATTT GACAATGCGC TATTTTTCTT CTTTAATATA TTTTTCTATT TATTCATTTT AAAATTATAT CTAAATTTAA
AGATATGTGC ACAAGGCATT GTGTGCATTG AGAACTTGAT GATGGATGCT AGAAGTTACT TATAATTTCT GTTCTTTCCT
CATTTATATA TTGGATCCCT TTCTCTGAAT AAATTGTAAA TGGCAATCGC GTACGGACTA CTTAATTTTC ATTATGGGAT
TTAATATCTT CTATCGTGTG GAATTTGTTC TGTAATAAAC TATTATTGCA GTGACTTTGA AAAATCTTGT CCCCCTCCAA
TTATGTCTCT GACACCCCTT GTTGTGTTGG GTTCTTGTGC AGTATATTCC AGGGACTAAG ATGGTATTTC CTGGTCTCAA
GAAGCCCCAG GAACGTGCTG ATCTTATTGC ATATCTGAAA CAAGCCACTG CACAGTGATT ATACGTTTTC GTTCATTCAA
TTTTGCAGTG TGTTTTCAAA GTTCGGGAGA TTTAATTTTC GGACGTTTAG TTTTTGCAGG AAGTGCCGTA TCTTTGGCAA
ATAATGTAGG CTACATTGGT CTGCAATGCT ATTTTGTTCA TTTCGCGTTG CTTTTAGAAA AGCAGCCGAG CATAGGCTGG
TGTAACAAAT TATCTCTTGA AAATTGAAAC ATTATTTTCT TCAGCATTTT AGTTAATTGG AGCCACAGCT CATTATTGTG
CTTCGCTGAA TTCATTAATT ATTTTACCGT TCTACTTGAT TTTCTTAGCT GAATATGGTT CCAAGAGCGG GGAGAGGGTA
AGCTAAAGTT CAAGCAAAAC ATAATGAAAT TCTATCTAAG ATTGAGCAGT CCTGGAGAGT TTTCGACTGA TTCTTTTTGC
ATATATTTAA TCTTCCTCAC ATTCTTTTCG ACTGATATTT GAGTCCCTGT AATCTTCTGA ACACGCACCG CTCTCGAAGA
AGAGCATCGT TTATCAATAC CCTTCACCTC TTAATATTGA AGGGGATTGC AATGTCATCC AATGGAAAGG AGGATCTTGA
CCATGCAGAG TTTTGGATGT TGATATTTTA ATAGAGGCAC TGCAATTGGT GTTGATATAA TATTATGGTC AAGCCGGGAC
CCCAACCAAT GCTTAGGTTT GATACTTGCA AGACAGAGGA GATCTGCTTG TGAAAGGTAA GGTTTTTTGT GGAAGGAATA
TGTTTGACAT TTATTCTGCA ATTAAGTTTA TATATGTGTT GTTTACAAAT TGATTCAAAC CATTATAGTG ATGACGAAGT
CATAATTAAA ATTTTCACAA AACAA

>Vigan.10G230000.01
CAACGAAAAA AGTTAGGGCT GGCCAAAGAG TCCCGTGGCG ACCGCGTTCC AAATTTGCCA CCCTGCCGCC TCATTTTCTC
CTATATATAT AAATAGAGTC ATGCATAACG CATTGCATGT CTTCCGAATA GTTCATTCCT TTCTACTTTT CCGCGTAATT
CTCCTTTTCC CTTCGATTCT GTCAAACCTA TTCACCTTCC TCCGCGAATG GCGTCCTTCG ATGAGGCTCC TCCCGGCGTT
GCCCAGTCCG GCGACAAAAT CTTCAGGACT AAGTGCGCTC AGTGTCACAC CGTCGAAAAA GGTGCCGGTC ACAAGCAAGG
TCCCAATCTG AATGGGCTGT TTGGAAGGCA ATCAGGCACT ACTCCCGGAT ATTCCTACTC TGCAGCTAAT AAGAACATGG
CCGTAACTTG GGAAGAAAAG ACACTATACG ATTATTTACT TAACCCCAAA AAGTATATTC CAGGGACTAA GATGGTATTT
CCTGGTCTCA AGAAGCCCCA GGAACGTGCT GATCTTATTG CATATCTGAA ACAAGCCACT GCACAGTGAT TATACGTTTT
CGTTCATTCA ATTTTGCAGT GTGTTTTCAA AGTTCGGGAG ATTTAATTTT CGGACGTTTA GTTTTTGCAG GAAGTGCCGT
ATCTTTGGCA AATAATGTAG GCTACATTGG TCTGCAATGC TATTTTGTTC ATTTCGCGTT GCTTTTAGAA AAGCAGCCGA
GCATAGGCTG GTGTAACAAA TTATCTCTTG AAAATTGAAA CATTATTTTC TTCAGCATTT TAGTTAATTG GAGCCACAGC
TCATTATTGT GCTTCGCTGA ATTCATTAAT TATTTTACCG TTCTACTTGA TTTTCTTAGC TGAATATGGT TCCAAGAGCG
GGGAGAGGGT AAGCTAAAGT TCAAGCAAAA CATAATGAAA TTCTATCTAA GATTGAGCAG TCCTGGAGAG TTTTCGACTG
ATTCTTTTTG CATATATTTA ATCTTCCTCA CATTCTTTTC GACTGATATT TGAGTCCCTG TAATCTTCTG AACACGCACC
GCTCTCGAAG AAGAGCATCG TTTATCAATA CCCTTCACCT CTTAATATTG AAGGGGATTG CAATGTCATC CAATGGAAAG
GAGGATCTTG ACCATGCAGA GTTTTGGATG TTGATATTTT AATAGAGGCA CTGCAATTGG TGTTGATATA ATATTATGGT
CAAGCCGGGA CCCCAACCAA TGCTTAGGTT TGATACTTGC AAGACAGAGG AGATCTGCTT GTGAAAGGTA AGGTTTTTTG
TGGAAGGAAT ATGTTTGACA TTTATTCTGC AATTAAGTTT ATATATGTGT TGTTTACAAA TTGATTCAAA CCATTATAGT
GATGACGAAG TCATAATTAA AATTTTCACA AAACAA

>Vigan.10G230000.01
ATGGCGTCCT TCGATGAGGC TCCTCCCGGC GTTGCCCAGT CCGGCGACAA AATCTTCAGG ACTAAGTGCG CTCAGTGTCA
CACCGTCGAA AAAGGTGCCG GTCACAAGCA AGGTCCCAAT CTGAATGGGC TGTTTGGAAG GCAATCAGGC ACTACTCCCG
GATATTCCTA CTCTGCAGCT AATAAGAACA TGGCCGTAAC TTGGGAAGAA AAGACACTAT ACGATTATTT ACTTAACCCC
AAAAAGTATA TTCCAGGGAC TAAGATGGTA TTTCCTGGTC TCAAGAAGCC CCAGGAACGT GCTGATCTTA TTGCATATCT
GAAACAAGCC ACTGCACAGT GA

>Vigan.10G230000.01
MASFDEAPPG VAQSGDKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKNMAVTWEE KTLYDYLLNP
KKYIPGTKMV FPGLKKPQER ADLIAYLKQA TAQ*