GBrowse Details

Vigan.10G215100.01

Basic Information:
Name: Vigan.10G215100.01
Multiple alignment
Variant Information
Position: Chr10:26406541..26408311 (+ strand)
Length: 1771
Functional Information:
Description: Similar to Glutathione peroxidase. [C6SZX7, Glycine max]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: glutathione peroxidase activity (GO:0004602)
InterPro: Glutathione peroxidase (IPR000889)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.62,0.03,3.39,34.88,0.18,7.55,0.14, 6.13
Arabidopsis thaliana homolog: AT4G11600.1
Automatic updates:
Name: NM_001249005 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500036 (LOC100500036), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249005 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative glutathione peroxidase (LOC100500036), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26406541..26406798 (+ strand)
Length: 258
Type: five_prime_UTR
Position: Chr10:26406799..26406849 (+ strand)
Length: 51
Type: CDS
Position: Chr10:26406958..26407034 (+ strand)
Length: 77
Type: CDS
Position: Chr10:26407255..26407316 (+ strand)
Length: 62
Type: CDS
Position: Chr10:26407533..26407651 (+ strand)
Length: 119
Type: CDS
Position: Chr10:26407861..26408031 (+ strand)
Length: 171
Type: CDS
Position: Chr10:26408108..26408137 (+ strand)
Length: 30
Type: CDS
Position: Chr10:26408138..26408311 (+ strand)
Length: 174
Type: three_prime_UTR

>Vigan.10G215100.01 class=Sequence position=Chr10:26406541..26408311 (+ strand)
ATTTTCTTAA TTCAGTATAT ATGCCAAACA ATCGGTATTT TATTCTCTTT TAATTCATTT TACAACATTT TTTTTTTTTG
CATTTTCTAT TATATAGCAT ATCACATTCA GAATGCTACA GAAGTGGCTC TATCTGGTTG TTGCGTCCAA TAATTTGCTT
TTTTCTCTAC CTCTCAAGTC ATTCATTCGA CAGTCTTCCA TCCTTCTTAT CTTTCATCAG GAAAAATTCT TTCAATTTCA
AATTCCTTCA CTCTAAAAAT GGCTAGCCAA TCAAACACTA AATCATCAGT TCATGATTTC ACAGTTAAAG TACGTTGTTT
TTCTCTACAC ATCCCACTTA TTTATCTCTT TTTCTTTCTT TAATGTATAA ATCCCTTGCA AGTCATGGAC TCGTTTAATT
ATTAAGTTTG TCTGCAGGAT GCCAGGGGAA ATGATGTTAA TCTGGGAGAT TACAAAGGAA AAGTTCTTCT CATTGTCAAT
GTTGCCTCAC AATGGTACTA TCTCTAATTG AAAAGTACCA ACTAATTCGA ATGGTTATGC AGGTCATTCA TGATAACATA
CGAATAGCTA CTTTAGCAAA CAGCAACCAA TCTCCTTCCA TTATTTGGCA CATCTTATGC TTACCAAAAA ACCTTAATGC
ACTTTTCTCA CACTTCACTT TTTCTTCCTA TAGTAAGCCT TACAATATAT TTTGATACTC AATATTTGCT GCAGTGGCTT
GACTAATTCA AACTACACAG AACTGAATCA AGTATATGAT AAATACAAAG GGAAAGGTAT GGTTTTCTCA TCTTTCTTGC
AGGCTTTTTG ATTTATATAA ATCTTTGTTT TTGTTCTCTG TTCTGGTTTG TTTTATACCT TTTCTTCATG CTAAAATGAT
CTTCCTTCAG CCTTGTATTT ACCAGCCATA GATAGTGTCT ATTTCTAAGA TCAAAAGGCT CTCTCTCCTT ATCTTCTTTT
TTATAGAGGC AGTCTTCTAA TTTTTTGCGT AGGACTTGAA ATTCTGGCAT TTCCTTGCAA TCAGTTTGGG GCTCAGGAAC
CAGGAACTAA TGAAGAGATA GTGGAATTTG CTTGTACTCG CTTCAAAGCT GAGTTTTCCA TTTTTGACAA GGTTGGTGTT
GTCCTTAATT GCTCTCACTG ATTTCATTCA ATATCTATCA ATTCGATAGA ATTCGAGAAC AGGTCCCAAT TTATGAAAGG
TACCAAACTG CAAACTGTGT TGAATATGAT GTTGACGGAG TGTTCTTATT ATGTTGTATT TCATCACAAT CTGTTGTAAA
CATGTTAAGT ATTGTTAGTA CATGCTTCTA ATGTATGTAG GTGGATGTGA ATGGTGACAA TGCTGCTCCA CTGTACAAAT
TTCTGAAATC AAGCAAAGGT GGAGGAGTCC TTGGGGATAG TATCAAATGG AACTTCTCTA AATTTCTTGT TGACAAGGAT
GGGAATGTGG TTGACCGTTA TGCACCAACA ACTTCTCCAC TAAGCATTGA GGTAACTTGA TCTGTACGAG GATGACACCA
GTAAAATTTG AACACTAACA ATGACTGTTT GGTCTTAATG TCTGCAGAAA GACATAAAGA AGCTGTTGGA TGCATGATGT
GGAGTTGCCA CTAAATGAAT ATCATCATGA ATAAGGAAAA TGTATTGCCA TATAAGTGGA ATTTCCACAG TATTTCTACT
TCTATATGTA CCTCTGAGTT GCTGTTCATC TTCATAAAAT TGTGACTAAC AACCATCCAA TAATTTGATT GCTTTAATTT
CATTAGTAGA A

>Vigan.10G215100.01
ATTTTCTTAA TTCAGTATAT ATGCCAAACA ATCGGTATTT TATTCTCTTT TAATTCATTT TACAACATTT TTTTTTTTTG
CATTTTCTAT TATATAGCAT ATCACATTCA GAATGCTACA GAAGTGGCTC TATCTGGTTG TTGCGTCCAA TAATTTGCTT
TTTTCTCTAC CTCTCAAGTC ATTCATTCGA CAGTCTTCCA TCCTTCTTAT CTTTCATCAG GAAAAATTCT TTCAATTTCA
AATTCCTTCA CTCTAAAAAT GGCTAGCCAA TCAAACACTA AATCATCAGT TCATGATTTC ACAGTTAAAG ATGCCAGGGG
AAATGATGTT AATCTGGGAG ATTACAAAGG AAAAGTTCTT CTCATTGTCA ATGTTGCCTC ACAATGTGGC TTGACTAATT
CAAACTACAC AGAACTGAAT CAAGTATATG ATAAATACAA AGGGAAAGGA CTTGAAATTC TGGCATTTCC TTGCAATCAG
TTTGGGGCTC AGGAACCAGG AACTAATGAA GAGATAGTGG AATTTGCTTG TACTCGCTTC AAAGCTGAGT TTTCCATTTT
TGACAAGGTG GATGTGAATG GTGACAATGC TGCTCCACTG TACAAATTTC TGAAATCAAG CAAAGGTGGA GGAGTCCTTG
GGGATAGTAT CAAATGGAAC TTCTCTAAAT TTCTTGTTGA CAAGGATGGG AATGTGGTTG ACCGTTATGC ACCAACAACT
TCTCCACTAA GCATTGAGAA AGACATAAAG AAGCTGTTGG ATGCATGATG TGGAGTTGCC ACTAAATGAA TATCATCATG
AATAAGGAAA ATGTATTGCC ATATAAGTGG AATTTCCACA GTATTTCTAC TTCTATATGT ACCTCTGAGT TGCTGTTCAT
CTTCATAAAA TTGTGACTAA CAACCATCCA ATAATTTGAT TGCTTTAATT TCATTAGTAG AA

>Vigan.10G215100.01
ATGGCTAGCC AATCAAACAC TAAATCATCA GTTCATGATT TCACAGTTAA AGATGCCAGG GGAAATGATG TTAATCTGGG
AGATTACAAA GGAAAAGTTC TTCTCATTGT CAATGTTGCC TCACAATGTG GCTTGACTAA TTCAAACTAC ACAGAACTGA
ATCAAGTATA TGATAAATAC AAAGGGAAAG GACTTGAAAT TCTGGCATTT CCTTGCAATC AGTTTGGGGC TCAGGAACCA
GGAACTAATG AAGAGATAGT GGAATTTGCT TGTACTCGCT TCAAAGCTGA GTTTTCCATT TTTGACAAGG TGGATGTGAA
TGGTGACAAT GCTGCTCCAC TGTACAAATT TCTGAAATCA AGCAAAGGTG GAGGAGTCCT TGGGGATAGT ATCAAATGGA
ACTTCTCTAA ATTTCTTGTT GACAAGGATG GGAATGTGGT TGACCGTTAT GCACCAACAA CTTCTCCACT AAGCATTGAG
AAAGACATAA AGAAGCTGTT GGATGCATGA 

>Vigan.10G215100.01
MASQSNTKSS VHDFTVKDAR GNDVNLGDYK GKVLLIVNVA SQCGLTNSNY TELNQVYDKY KGKGLEILAF PCNQFGAQEP
GTNEEIVEFA CTRFKAEFSI FDKVDVNGDN AAPLYKFLKS SKGGGVLGDS IKWNFSKFLV DKDGNVVDRY APTTSPLSIE
KDIKKLLDA*