GBrowse Details

Vigan.10G200300.01

Basic Information:
Name: Vigan.10G200300.01
Multiple alignment
Variant Information
Position: Chr10:25283848..25286585 (+ strand)
Length: 2738
Functional Information:
Description: Similar to Uncharacterized protein. [C6T574, Glycine max]
GO: Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
Cellular Component: intracellular (GO:0005622)
Molecular Function: ubiquitin thiolesterase activity (GO:0004221)
InterPro: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (IPR001578)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.72,8.86,5.29,3.00,15.85,12.31,9.24 ,4.98
Automatic updates:
Name: NM_001249984 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527755 (LOC100527755), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249984 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative ubiquitin carboxyl-terminal hydrolase (LOC100527755), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:25283848..25284013 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr10:25284014..25284073 (+ strand)
Length: 60
Type: CDS
Position: Chr10:25284280..25284411 (+ strand)
Length: 132
Type: CDS
Position: Chr10:25284499..25284537 (+ strand)
Length: 39
Type: CDS
Position: Chr10:25284736..25284841 (+ strand)
Length: 106
Type: CDS
Position: Chr10:25284932..25284990 (+ strand)
Length: 59
Type: CDS
Position: Chr10:25285107..25285181 (+ strand)
Length: 75
Type: CDS
Position: Chr10:25285731..25285779 (+ strand)
Length: 49
Type: CDS
Position: Chr10:25285914..25285990 (+ strand)
Length: 77
Type: CDS
Position: Chr10:25286126..25286215 (+ strand)
Length: 90
Type: CDS
Position: Chr10:25286216..25286585 (+ strand)
Length: 370
Type: three_prime_UTR

>Vigan.10G200300.01 class=Sequence position=Chr10:25283848..25286585 (+ strand)
AATTTGTACA ATAATCCAAT CCATAAATAG GACATGCTAA AGAATGGGCT TAGATTATTT TGAGAAAGAG GTGGGCATTG
TGGGCCCATA AGAGGCGTAT AAAGGCAGAG CAATCACGGA TGTGAAGGTA GCGTAGGCGG AGCAGGGAGA AGAAGGAGAG
AAAACAATGG CTTCTTCTGC TAAAAGGTGG CTTCCGCTCG AAGCAAACCC TGAAGTCATG AATCAGGTTC TCTCCGTGGA
TACTCCCTTG CGTATTATTA TTTGTGCCAT TGTTCTTCTT TGTTTTTCTT TAATGCGATT TGAATAGTAA CAACTTTTAA
TTTTAATCGA GAATCTTCTT CAGATTTTGA AGTTGAATAC TTTTGTCTTC TCACTCTTCT TCGAATTAAT GATATTCATA
GTTTAGCGTA TAATTATATG GGTGATTTGC AGTTCCTTTG GGGACTTGGG CTTGGAGAGG ACGAGGCAGA ATGCTGTGAC
GTTTATGGCT TAGATGAAGA GCTTCTGCAA ATGGTTCCAA ACCCCGTTCT TGCTGTGCTT TTTCTTTATC CCATAACCAC
CCAGGTTTTT ATCCTTTTTC TTCTATTTCA ACTCGTCATT TTCCATGTCT GGGTCACTTC TTATTTTCTA CGGATTTTGT
CAAATCATTA GAGTGAAGAA GAAAGGTTGC AGCAAGAAAA GGAAAAAAAG GTGAGTTGAT TTTATACTGT TACAATCTTT
TCTGCATTTT CCCGCTTCTC TGAATTGCCT GTTTTCTTGG ACAACATGTG TTTTTAGGTC TCATTACTCA GTGAACAATA
CCATAGTAAA GTTTTATTTT CGCTAGCATA TGTCATAATG CCATTGAACA TTAGTCAATG AACTGCTTAC CGTTGTGTTC
TGGTGCAGGA ATATAGCAGT AGAGTGTATT TTATGAAGCA AACTGTGGGT AATGCCTGTG GAACAATTGG ACTGCTTCAT
GCTCTTGGCA ACTTGACTTC AGAAGTCAAG TTGGGTGAGT TGCTTACTTG CCACAGGTTA ATTCTCTCCG TTGAGGTTTT
TAATGTACTG GATCATATTT ACCAATCAGT GTTGCTTTTG CCAGTTGAGG GGTCTTTCTT TAATAACTTC TTTAAATCCA
CTGCAAGTAT GGATCCACTG CAGGTTATTC CTTCTTACCT TACCTTTTTG CCCTCTTATT GTGTTCGCAC TAGACACTGT
TGATCAGCTA AAACTTATAA GGAATACCCA TCTTACATTT TGTAACTTGT CTCATACAGC GTGCTAAATT TCTGGAGAAT
GACAGAGAAA TGGAAGTTGC TCATTCAGTG GCTGCGACTG CTGGTGATAC AGAGGTAATT TATTGATTGC TGCAACAATG
CATTGGGAAT CATGTGATAT ATTCGTGGAA CTGGTATGGT ACCATGGTTC AGTCATCATG TATTGTAAAG CTAATCCTAT
CAATTTGGAT TAGTTTTCCT CTTGTTAGCA TCTTTAATCT TTGGGTGTGA TACATGATAC ATTCTTAGTG GCTTTAGATA
ACGTTTATCT TAAATCGTGT CGTTATTGTT GTCATTATAT AACCGTGTAT TTGTTTTATG CAATGATAAA TGTTTTGCAA
ACATAAAGCA TTCTGATGGC CTCTCAACTC AACTTCACAG GAATATTAAT TTGAGAGTAT ATTTCAACAT ATTTAAGTCA
AACCCTATTT CTTGCTCCAA TTTATGTATG ACTTGCATGC AATGTTCACG AGGATTTACT GGGAAAATAG GGTGGAAGAA
GTTCCTTTGG AAATGGGAAG AAGGGATTAA TATATTTAAT ATGACTCAAT AATTGCTAGG ATATATCTTA TTCAGCTTCT
CATCTTACCA CTGATTTCTT TGTTTCAAAT ATTTGTAATG CAGGCATCTG ACAATGCTGA TGCACATTTC ATATGCTTTG
TCTGTGTTGA TGGTAAATTT TCTATAAAAT TGATTGTGTG TATCACAGTC GTTTTTTTCC CCTCTACATT CTCCTTTCTT
GTGCATTTAG TTTTGTATTT TATCAGGGAT TGAATTTTGC ATGATGCTGT AATAATTCAC ATGCAGATGA ACTTTATGAG
CTTGATGGAA GAAAATCGTG GCCAATATCT CATGGTCCAT GTTCACCGAG TACTTTGTTG AGGGTAAATA ACATCTTTCC
ATTTTCAAAT CGTAAATCCT TGGGTAAACC CACGTTGATT TGCTGACCTT GTTCACCGAG TACTTTGTTG TTTTTAAGGC
CATCTCATCT TTCTGCTAAT ATATTGAAAT TACGACAGGA TGCAGCTAAG GTGATACAGA GCATGATCCA GAAAAATCCG
GAGTCCCTCA ACTTCAATGT CATCGCCTTA TATAAGAAAT CCAGGTAGAT ATTTTAAGGC TATTGATTTA GGTGGCGTTA
GTGAGTATGT TCAGATTTTA CCTTACACTC CAGATCAATA GAAAGCGAGT TTTTTTTGAA AGTGAACCAA TGTAAATAAA
ATTTTAAAAA GCAATCCATC ATTAGAAGCA ATACTCATTT CTGGATTGCT TCTATAAAGA TCGCTACAAG GTCCTAGGGA
TGTCATGGTA GTCCATAGAA CCAAATTACT TCTAGTGCAT TTGATTGTTC TGTGAATCTG TATGACATAC AATAGAACTG
CGAGTTTTTT AACATTTGTT CTGCTAAGTA AATATGCTTC TAAATTAGAC AACATAAAGT TGAGAATCGA ATCAAACATA
GGAATCATAA AGTCGGGT

>Vigan.10G200300.01
AATTTGTACA ATAATCCAAT CCATAAATAG GACATGCTAA AGAATGGGCT TAGATTATTT TGAGAAAGAG GTGGGCATTG
TGGGCCCATA AGAGGCGTAT AAAGGCAGAG CAATCACGGA TGTGAAGGTA GCGTAGGCGG AGCAGGGAGA AGAAGGAGAG
AAAACAATGG CTTCTTCTGC TAAAAGGTGG CTTCCGCTCG AAGCAAACCC TGAAGTCATG AATCAGTTCC TTTGGGGACT
TGGGCTTGGA GAGGACGAGG CAGAATGCTG TGACGTTTAT GGCTTAGATG AAGAGCTTCT GCAAATGGTT CCAAACCCCG
TTCTTGCTGT GCTTTTTCTT TATCCCATAA CCACCCAGAG TGAAGAAGAA AGGTTGCAGC AAGAAAAGGA AAAAAAGGAA
TATAGCAGTA GAGTGTATTT TATGAAGCAA ACTGTGGGTA ATGCCTGTGG AACAATTGGA CTGCTTCATG CTCTTGGCAA
CTTGACTTCA GAAGTCAAGT TGGTTGAGGG GTCTTTCTTT AATAACTTCT TTAAATCCAC TGCAAGTATG GATCCACTGC
AGCGTGCTAA ATTTCTGGAG AATGACAGAG AAATGGAAGT TGCTCATTCA GTGGCTGCGA CTGCTGGTGA TACAGAGGCA
TCTGACAATG CTGATGCACA TTTCATATGC TTTGTCTGTG TTGATGATGA ACTTTATGAG CTTGATGGAA GAAAATCGTG
GCCAATATCT CATGGTCCAT GTTCACCGAG TACTTTGTTG AGGGATGCAG CTAAGGTGAT ACAGAGCATG ATCCAGAAAA
ATCCGGAGTC CCTCAACTTC AATGTCATCG CCTTATATAA GAAATCCAGG TAGATATTTT AAGGCTATTG ATTTAGGTGG
CGTTAGTGAG TATGTTCAGA TTTTACCTTA CACTCCAGAT CAATAGAAAG CGAGTTTTTT TTGAAAGTGA ACCAATGTAA
ATAAAATTTT AAAAAGCAAT CCATCATTAG AAGCAATACT CATTTCTGGA TTGCTTCTAT AAAGATCGCT ACAAGGTCCT
AGGGATGTCA TGGTAGTCCA TAGAACCAAA TTACTTCTAG TGCATTTGAT TGTTCTGTGA ATCTGTATGA CATACAATAG
AACTGCGAGT TTTTTAACAT TTGTTCTGCT AAGTAAATAT GCTTCTAAAT TAGACAACAT AAAGTTGAGA ATCGAATCAA
ACATAGGAAT CATAAAGTCG GGT

>Vigan.10G200300.01
ATGGCTTCTT CTGCTAAAAG GTGGCTTCCG CTCGAAGCAA ACCCTGAAGT CATGAATCAG TTCCTTTGGG GACTTGGGCT
TGGAGAGGAC GAGGCAGAAT GCTGTGACGT TTATGGCTTA GATGAAGAGC TTCTGCAAAT GGTTCCAAAC CCCGTTCTTG
CTGTGCTTTT TCTTTATCCC ATAACCACCC AGAGTGAAGA AGAAAGGTTG CAGCAAGAAA AGGAAAAAAA GGAATATAGC
AGTAGAGTGT ATTTTATGAA GCAAACTGTG GGTAATGCCT GTGGAACAAT TGGACTGCTT CATGCTCTTG GCAACTTGAC
TTCAGAAGTC AAGTTGGTTG AGGGGTCTTT CTTTAATAAC TTCTTTAAAT CCACTGCAAG TATGGATCCA CTGCAGCGTG
CTAAATTTCT GGAGAATGAC AGAGAAATGG AAGTTGCTCA TTCAGTGGCT GCGACTGCTG GTGATACAGA GGCATCTGAC
AATGCTGATG CACATTTCAT ATGCTTTGTC TGTGTTGATG ATGAACTTTA TGAGCTTGAT GGAAGAAAAT CGTGGCCAAT
ATCTCATGGT CCATGTTCAC CGAGTACTTT GTTGAGGGAT GCAGCTAAGG TGATACAGAG CATGATCCAG AAAAATCCGG
AGTCCCTCAA CTTCAATGTC ATCGCCTTAT ATAAGAAATC CAGGTAG

>Vigan.10G200300.01
MASSAKRWLP LEANPEVMNQ FLWGLGLGED EAECCDVYGL DEELLQMVPN PVLAVLFLYP ITTQSEEERL QQEKEKKEYS
SRVYFMKQTV GNACGTIGLL HALGNLTSEV KLVEGSFFNN FFKSTASMDP LQRAKFLEND REMEVAHSVA ATAGDTEASD
NADAHFICFV CVDDELYELD GRKSWPISHG PCSPSTLLRD AAKVIQSMIQ KNPESLNFNV IALYKKSR*