GBrowse Details

Vigan.10G188200.01

Basic Information:
Name: Vigan.10G188200.01
Multiple alignment
Variant Information
Position: Chr10:24220009..24222933 (+ strand)
Length: 2925
Functional Information:
Description: Similar to Uncharacterized protein. [G7K2H2, Medicago truncatula]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:62.81,13.68,9.06,7.20,14.28,12.67,19 .45,11.25
Automatic updates:
Name: NM_001249202 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499793 (LOC100499793), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249202 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor-like protein 8a (LOC100499793), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:24220009..24220169 (+ strand)
Length: 161
Type: five_prime_UTR
Position: Chr10:24220170..24220207 (+ strand)
Length: 38
Type: CDS
Position: Chr10:24220988..24221069 (+ strand)
Length: 82
Type: CDS
Position: Chr10:24221174..24221206 (+ strand)
Length: 33
Type: CDS
Position: Chr10:24221325..24221446 (+ strand)
Length: 122
Type: CDS
Position: Chr10:24222215..24222376 (+ strand)
Length: 162
Type: CDS
Position: Chr10:24222518..24222635 (+ strand)
Length: 118
Type: CDS
Position: Chr10:24222636..24222933 (+ strand)
Length: 298
Type: three_prime_UTR

>Vigan.10G188200.01 class=Sequence position=Chr10:24220009..24222933 (+ strand)
AAAGAGTAGA AAGGGAGGGA GGGAAGAATA GGTTTGAGAG AGAAAAGGCT AATTGGATTG CATTTCTCTC TCTTTTTGGT
AGACCAAGAG GGAAATAGGA GATCTGATTT CTTTCTCCCT TTGCATAATT TTGCGATCAG AATTGTCTTC AAGAAAAACC
AATGGGATTG TGGGAAGCTT TTCTCAATTG GCTTCGCAGG TAAGCTTTTT TTAACAAAAA TAGTCAGGCT TTTCGCATTG
ATTGGCTCTT TGTATCACTC ATGGTCTTTT CATTTTCAGG TTTCTGGTAT TTGTGTTTTT CTTTTATAGT CCGTTGATAG
TTTGTAATGT GTATACTTTA TGTATGGCTC TGCGTTTTTT TTTGCTCAGA GGGAGGATTT GTTGGTGGTC TAATGTTTTA
GAGTAATGAT TTCCAATATT TTTGTACTCA ATGCAAATAT TTATATATCA TGTGAGTAAT GTTTCACGAT TTGTAAATGT
TTTCACCTTT CATACGCTAC GTGAATGGTT TTGTTTCAAA CGAGATATCT TAAATTTTCT AGTTATCACC GTCTTAATTT
TGGAGAAGTA TGGGGAACTT GTGGATAGGA AATTTATGTA TGTCTGTGTG TATAATCTTT TTATTTTTCA ATTAATGGAC
AATGATGTTT TCTTGACCTT TTGGAATAAA GGTAGATATG GAAGTCACTG GTGAAAAAAT GATACAAGCT TATTGGCATG
GAAGGCAAAT CGCCTAATTA GATTTTTTTT GTCCTGCACT TCCAAATTCG TTTGTGTGAA ACAGAATAGT GCTTTTTTAA
ATTACTTTTG ATTGCCCTAA TATCGCTTTC TCTTTTTAAT GCACAAATTT TTAGTTTATG TTACACTTGG AAGTGAAATT
ATACATTTTT AGGTTTAGAG TCTATGCACA TGATCTGAAC TTCGTGAATC ACTTTCATCA AGAAAACAAG AGCTTATTGT
GTTGTAAATT TGTTTGCAGC CTATTCTTCA AGCAGGAGAT GGAGTTATCT CTGATTGGAC TTCAGAATGC TGGAAAGACT
TCCCTTGTAA ATGTAGTCGC TGTGAGTACA ATAATCACTT TGGCTTTCGC TTAGCAATTT AGTTGTTTAT CTTTAAGGTT
GACTAACTGA CAATATTTCT TATGCTTATT CTTTTTGGTT TATAGACTGG TGGCTATAGT GAAGACATGA TTCCTACTGT
AAGTTCACCA AATGCTTTTA ATTATTGTTA TCTCCTCCGT TTATTCAATT TTACGGACTT TTCTATATAC CGTGGGCAAA
TGACATTCTG ATCGATTCGT TGTTCTCTGA TTTCAGGTGG GATTCAATAT GAGGAAAGTG ACAAAAGGGA ATGTTACAAT
AAAGTTATGG GATCTTGGTG GGCAGCCAAG GTTCCGCAGC ATGTGGGAAC GTTACTGTCG TGCGGTTTCT GCTATTGTGT
ATGTAACGAA CTTCTTATCT TTTTCTGAAT TATTCTCTCT CCCTATTTGC TCGCGCCCTT ATATGCATGT TTCTGGCAGG
ATTATAATTT ACATGCTTAT ACTGATACAA ATTACTGATA AATGTTTAAT GTACAAGTTG TATTGGTAAT GAACTTGTGT
GTACAGTCTT CATGTTGCCT ACATGTTTTT GATTCTGGTC TAGTGATCAA TATAAGGTCA ATTTGTGTTT GTTGCATTTC
ATGGTTGTTT GATAATCAAA ATGCGTAGTT GTTTATTTGT GTTTGTTGTA ATTGGGATAC ATCCAGAATA AGTCTTGTTT
GATGGTAACT AGTGGTTGAG ATTATTTTTT CTTCCTTGAA CCCAAACGAT GTTCTTCACA TTTATCTATG ACAGTGATGC
AAAACCAATT GCTGCTCAGA TGCCTTAGTA AAGGGCTCCT CCCTGGTGTA TTTGTATTTA TAAATAAATT CAATTGTCCA
TCCATGAAGG GGTGTACGCA GACTTATTAT CCTTCAATGA CCATAATTGG CCTAAAACTT TAATCTGTAT GCTTTGCAGC
TGCCCAGTGT CGAAAAGACT TTGTTAGTTA TATTTCAATT TTAATTGGTT GTAACAATTG CTGCTGCTGA GAATTCTGTC
TCTTAGATCC ATTGCACTTG TATAATTGGA TCGTGCGCAC TTTGTTTTAA ATTTACACTT TGAGCTAACA GTCTAATGCT
GAATCTGTTC AACTTAGCAA CTAAACATCA TACCATATTT CTGCAGTTAT GTTGTTGATG CTGCCGATGC AGATAATCTT
AGCATATCAA GAAGTGAGCT TCATGATTTG CTGAGCAAAC CATCATTGAG TGGCATTCCT TTGTTGGTAT TGGGGAACAA
GATTGACAAA CCAGGCGCTC TGTCTAAGCA AGCATTGACT GACCAAATGT AAGACCTAAT ATAAGTATGA AACAATAAAG
GAGTAAAGTA ATTGTAGAAA GTTATAGAAC TAAGAATTCA TTTTCTCCTT CAATTTTCTT TTCTATGTGT TCAAACTACT
TCAGTGCTGA AAAATACTAT GGTGTGCAGG GAATTGAAGT CAATCATTGA CAGGGAAGTT TGCTGCTTCA TGATCTCGTG
CAAAAACTCG ACGAACATTG ACTCTGTTAT AGACTGGCTT GTAAAGCATT CCAAATCGAA GAGCTGAACT GCTTCTTTCT
ATTTTGAACT CTAGTGTAAT TTATGGTTGA TACATTTATG GATTTACTAG AGGCGTTTGC ATGTCTAACT CAGTTGCTGA
TTGGTTTATT TTCCTTTTGT CAGATGCTTT GTAATATAAT ATCATTCTTG TCCGGTAGGT AAGTAATCAA ACGGGATGAC
ATACATGGGA AAGGTTACAT TATGAGTAAA TCAGTGTGTC ATAGGCTTAG CCACATCATT AAAATTCATT GAACTGCATT
TGCGATGAAT ATATGTTCTT TTATCTTTCT AACTCTGGAT TTGAT

>Vigan.10G188200.01
AAAGAGTAGA AAGGGAGGGA GGGAAGAATA GGTTTGAGAG AGAAAAGGCT AATTGGATTG CATTTCTCTC TCTTTTTGGT
AGACCAAGAG GGAAATAGGA GATCTGATTT CTTTCTCCCT TTGCATAATT TTGCGATCAG AATTGTCTTC AAGAAAAACC
AATGGGATTG TGGGAAGCTT TTCTCAATTG GCTTCGCAGC CTATTCTTCA AGCAGGAGAT GGAGTTATCT CTGATTGGAC
TTCAGAATGC TGGAAAGACT TCCCTTGTAA ATGTAGTCGC TACTGGTGGC TATAGTGAAG ACATGATTCC TACTGTGGGA
TTCAATATGA GGAAAGTGAC AAAAGGGAAT GTTACAATAA AGTTATGGGA TCTTGGTGGG CAGCCAAGGT TCCGCAGCAT
GTGGGAACGT TACTGTCGTG CGGTTTCTGC TATTGTTTAT GTTGTTGATG CTGCCGATGC AGATAATCTT AGCATATCAA
GAAGTGAGCT TCATGATTTG CTGAGCAAAC CATCATTGAG TGGCATTCCT TTGTTGGTAT TGGGGAACAA GATTGACAAA
CCAGGCGCTC TGTCTAAGCA AGCATTGACT GACCAAATGG AATTGAAGTC AATCATTGAC AGGGAAGTTT GCTGCTTCAT
GATCTCGTGC AAAAACTCGA CGAACATTGA CTCTGTTATA GACTGGCTTG TAAAGCATTC CAAATCGAAG AGCTGAACTG
CTTCTTTCTA TTTTGAACTC TAGTGTAATT TATGGTTGAT ACATTTATGG ATTTACTAGA GGCGTTTGCA TGTCTAACTC
AGTTGCTGAT TGGTTTATTT TCCTTTTGTC AGATGCTTTG TAATATAATA TCATTCTTGT CCGGTAGGTA AGTAATCAAA
CGGGATGACA TACATGGGAA AGGTTACATT ATGAGTAAAT CAGTGTGTCA TAGGCTTAGC CACATCATTA AAATTCATTG
AACTGCATTT GCGATGAATA TATGTTCTTT TATCTTTCTA ACTCTGGATT TGAT

>Vigan.10G188200.01
ATGGGATTGT GGGAAGCTTT TCTCAATTGG CTTCGCAGCC TATTCTTCAA GCAGGAGATG GAGTTATCTC TGATTGGACT
TCAGAATGCT GGAAAGACTT CCCTTGTAAA TGTAGTCGCT ACTGGTGGCT ATAGTGAAGA CATGATTCCT ACTGTGGGAT
TCAATATGAG GAAAGTGACA AAAGGGAATG TTACAATAAA GTTATGGGAT CTTGGTGGGC AGCCAAGGTT CCGCAGCATG
TGGGAACGTT ACTGTCGTGC GGTTTCTGCT ATTGTTTATG TTGTTGATGC TGCCGATGCA GATAATCTTA GCATATCAAG
AAGTGAGCTT CATGATTTGC TGAGCAAACC ATCATTGAGT GGCATTCCTT TGTTGGTATT GGGGAACAAG ATTGACAAAC
CAGGCGCTCT GTCTAAGCAA GCATTGACTG ACCAAATGGA ATTGAAGTCA ATCATTGACA GGGAAGTTTG CTGCTTCATG
ATCTCGTGCA AAAACTCGAC GAACATTGAC TCTGTTATAG ACTGGCTTGT AAAGCATTCC AAATCGAAGA GCTGA

>Vigan.10G188200.01
MGLWEAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM
WERYCRAVSA IVYVVDAADA DNLSISRSEL HDLLSKPSLS GIPLLVLGNK IDKPGALSKQ ALTDQMELKS IIDREVCCFM
ISCKNSTNID SVIDWLVKHS KSKS*