GBrowse Details

Vigan.10G139800.01

Basic Information:
Name: Vigan.10G139800.01
Multiple alignment
Variant Information
Position: Chr10:19750422..19754261 (+ strand)
Length: 3840
Functional Information:
Description: Similar to thylakoid membrane protein ssl2009-like. [XP_004512285.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.42,4.86,38.77,17.10,39.94,27.28,20.71,17.74
Arabidopsis thaliana homolog: AT1G42960.1
Automatic updates:
Name: NM_001255481 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100786309 (LOC100786309), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:19750422..19750561 (+ strand)
Length: 140
Type: five_prime_UTR
Position: Chr10:19750562..19750622 (+ strand)
Length: 61
Type: CDS
Position: Chr10:19751743..19751860 (+ strand)
Length: 118
Type: CDS
Position: Chr10:19752390..19752489 (+ strand)
Length: 100
Type: CDS
Position: Chr10:19752949..19753035 (+ strand)
Length: 87
Type: CDS
Position: Chr10:19753820..19753969 (+ strand)
Length: 150
Type: CDS
Position: Chr10:19753970..19754261 (+ strand)
Length: 292
Type: three_prime_UTR

>Vigan.10G139800.01 class=Sequence position=Chr10:19750422..19754261 (+ strand)
CTAGCGACAA TATCGAAGCG CAACACTAGA AGTAGTAGGA TCTGTTGTTG TCCCTATTGG TTTCTACGAC AAGCAAATCA
ACACTAACAG AGGAAAGGAG GGAAGAAAGA AAATCAGAGT TTTATTTTGG CTTTGCAGAA ATGGCTACTC TATCAAGCTT
CATCGCTTTG CCGAAGAATC CTAAGACCCA CTTTCTCTCA GGTGATCACT TCCATCACTC TCATCATTAC CATTTCCATA
CCAAAAGGGC ACCACTCTAA ACTGAAAAAG CTGTTCCCTT TTTTCTTGCA TTTTTTTTCT CAGTTGCACT TTCCACTGTT
TTCCTTTAGA TTTTTCTGAG GTTGTTCACT ATATCAAGTT TGCCACTTTT ATTTATGTGT GCCTGTGTAT TTTGTAATTC
TCGGATATTC CGTGAGTCCC TGTTTTTTTT TTTGGGTTCA ATGAAAATGG AGGTGATAAG TGTTTTTGGA ATGGTTTTAG
TTGTGTGTGA ATTTGGTGTT TGGTTCCCAA ATTATGGGAA AGTTTGATTA GATTCATTTA GTTGGATTGT GTTGAGAGAT
TCCTCTTTCG TTAGTCTATG TTTGTTTTGG GGGTGAAATG AAATTGTGGA AGATGAGAAT GTGAACTAAA CTTTATTATT
GTGTATATTG CTAATGTACA TTGCTAATTT TTTCATTCTA ACCTACTATA GCATACTGAA AATATATTTC ATTTCGAGGA
GGTGGATGAT ACATGCATGC TGCCTTCTTT TATGTTTTGT TTTAGAGAAA TATATAATTC GTCTGCAAAA CATGCTATTG
TGTGATGTGT TGTTCTGGTC CCCAAAAGTT TCCATAAGTA GAAATTGATC CCCATAGATG TGAACTTGTT AGAAAGTTTA
TAGGACATTG GTAGAGTGAA CTTTTTAGCA AGCCAACATT TTGACGACCA ATTTGTGCAT AAGAAAATCT TCGAAGACCA
AAAAATACAA GTAACCTCTT TCGAAGATCA GTTTATATTT GCTCTTTGTT TTATTTTGCC TTTTGTAATT GTGTTGAAGT
CTGTTTATAT GTTAATATAA TTTTGGAGAA CATAATTGTG ATGCCAGGGG ATGCAGTGAT TATATGGGTC TTTTTATCAT
TACAGGTTTT AGAGATTTTT ATATATCTGT TCGTGTGACA AATATCTTAA TGAAAAACCT TTAAGCAAAA TTCATGGAAT
AAAGAATGGT GTTTGATCCT TGCTACTGTA ATTATAATGG TAACTTATTA AAGTTCAACA TATCCAACAA CACCCCCTTT
TTAATGATTT TCCAGAAATC TAATACTCAG ATTAATGTCA GGTTCCTCAT TGATGCCGAT GGACAAATGC TTCTTGAAAA
TCAGCTCTGG TGAACAATTT CCAGGCTCCT CTTTCAGAGC TAAAACATCA CGTAACCAAC CACTTGTTAT TCGAGCTGGG
TAGGATGAGT TAACCTTCTT GTGCATTCTT TCTCTGGGGT TGGAGTTACA TGACTGTTTG GTATAAATTT AGAGGATGAT
TTGGGATGTT AAAATAAAAC AAGTGACATG CAGATTTTCA AAGAGAATGC TATTTCTAAA TACTGAAAAA GTACAGCAGT
TGTCTTAATA ACCTACAGTA CATGAAGCAG AAAACAATAT CTGAGCCACC TTATCATGGA TGACTAATTG ATAAAAAGAA
ACTGACTCCT ATTTTCCCGT CCTTAGCTAA CAGAATAATG AACCAAGTAA AAAGCACAAA TAGTAAAAGC AGATGACTTT
ATCGGGTATC ACAAATATTA TTAAGCTACA GCTATTCTCG TTGTTTCATT TTGTGTTTCT AGTTAAACAG TGCCGTGATC
ATCAACTGTA CCTTACATTT AACTCATTTG GTTGTCTAAA ATATTGGCTT GAGCATAATT TAAACAAGTT GGTATACCTT
TTGGCATTGT GTAACTTTAT AGTGTTTCTA ATCTCTCTGC TAGAACAGTG GTGATGGTGG AAGATCAATA AGTGGAAGTA
TTTTTGTTGG TGGTTTTGTA TTGGGAGGAC TAATTGTTGG AGCATTGGGT TGTATTTATG CACCTCAGGT ATGTCTGCAG
AACCAACATT TTCCCTTTTT AACTCTTCTT ATTTCTTTTG ATTTATCATT ATCCATATCG TGTAATATTG TCTGCTTAAC
TCGTGAAGAA TGTACTTTAC TTCACTTAGG TCAAAGTTTA GTTTTGCTCA AATCAGATGT GAATATAATC GTAACATCAT
TTACACATTG AATTCTGTAT TACTTAATTT CCATCATTCT TTTCTTGTAA AGTTGCAAGA TAGTAGTACC CTTCATTATT
AATAGGTGTA TCAAATTTCA ATATGCATCT ATTTATGTCA GCTTTCTTTG GAATCATCAA ATCTATCTTG CTTTTCAACA
ATTTTTTGCA ATGGTCTTTT ATATATATAT ATATATATAT ATGTCGATTT TTAACTTGAA AGATTGTTTA CTGAATGTAA
GGTCAGGAAA GAGATTATCT TTGACTTCTG TGATATTAAC TTTGCAGATA AGCATGGCAA TAGCTGGAGC AGACCGTAAA
GACTTGATGA GGAAACTTCC AAAATTTGTG TACGATGAAG ATAAAGCTTT AGAGGTCAGC AAATTTCACT GCTGTTACTC
TGTACTTGAA AGTTGAACAT TTTTCTCATT GAGTGTGTCT GAATGTTTAT TATTGAAAAG GAAGAACCTA GTTATATTTA
TTATACTAAA TTCACTCCCC CCCCCCCCCC CCCCCCCCGT CAACACAAAA AGGAAAAAGG AAAAACATTA CCAAAAATTA
GTGCCTTGTA TAGGCTCACG AGTATATCCG ACAACTGAAA TCAATGACCA AAATATGAAT TGTGATGAAA TCAGAAAATC
TGCATGACCG AGGACAATAC TTACACATAA GTAACTTTTA TTAAAACTAT CACATTGACA TAAAAAGCAC GATATAATAA
GCTAAATTCA TTGTTAATAT AACTTATTTA CATTGATATA TTTGTATTAT GAAGGTAGTG AAGGTAAATC CTTATAAATT
ATGAAATATA TCAGAAACTA AAAGTAACTA TGAAACCACA TCAGGGAAAA AGATGGGGGG CGAGGGATGT GCATTTCTGA
GATACAATAT AAGTGTTTCT ATAGTGGTTG TGGAGTGTTA AACATCTTTT GGGGAAGAAA ATGACTCAGT AACATATCTG
CGAGTTTATG GTGTGTGGTT GGATATTGTT TTTCCTTAAA AAGAGTGACA TGATATATCA TTATTGATTG ATACGCATTT
GTTGATGAAA AAGAACCTGT GACAATTGTA CTTATCTATT AACTTGTCAT CTCATTTGGT CTTACAAACT AATATAGTTA
AATTACTGTT TTTTTTCTTT TGTGTGTGAT GAAAACAGAA GACTCGCAAG GTGCTGACTG AGAAAATAGC GCAGCTAAAT
TCTGCCATAG ATGGTGTTTC TGCACAGTTG AGGTCAGACG TAAGCCCAAA CGAAGACCCA GATGAATTGG CAGTGAACTC
AGAGGAAATG GAAGCTTCAG TACAATGAAA TCATTTGATG ATATTTGAGC TCAAAATATC ATCATCTCTC CTTTTCTTAG
TCAAGAAAAT ATGAACTTTG GTTATTGGTT TTAAGTTTTA GGAGTTAAAT TTGGTTATCT CATTTAACTA TTTCATCTTA
TAATGGTTCA TTGTTTACGT ACAGGATATA TCTACTGGAA ACTTTTGTTT ATTGTGAGAG AAATAAGAAT TATAAAGTAT
AAACACATTG TGGTTGTGAA GTTGATGATC ATAACTTGCT TTTTCATAAT TGAATATATT AATGTATGCA GTTGTCACAA

>Vigan.10G139800.01
CTAGCGACAA TATCGAAGCG CAACACTAGA AGTAGTAGGA TCTGTTGTTG TCCCTATTGG TTTCTACGAC AAGCAAATCA
ACACTAACAG AGGAAAGGAG GGAAGAAAGA AAATCAGAGT TTTATTTTGG CTTTGCAGAA ATGGCTACTC TATCAAGCTT
CATCGCTTTG CCGAAGAATC CTAAGACCCA CTTTCTCTCA GGTTCCTCAT TGATGCCGAT GGACAAATGC TTCTTGAAAA
TCAGCTCTGG TGAACAATTT CCAGGCTCCT CTTTCAGAGC TAAAACATCA CGTAACCAAC CACTTGTTAT TCGAGCTGGT
GGTGATGGTG GAAGATCAAT AAGTGGAAGT ATTTTTGTTG GTGGTTTTGT ATTGGGAGGA CTAATTGTTG GAGCATTGGG
TTGTATTTAT GCACCTCAGA TAAGCATGGC AATAGCTGGA GCAGACCGTA AAGACTTGAT GAGGAAACTT CCAAAATTTG
TGTACGATGA AGATAAAGCT TTAGAGAAGA CTCGCAAGGT GCTGACTGAG AAAATAGCGC AGCTAAATTC TGCCATAGAT
GGTGTTTCTG CACAGTTGAG GTCAGACGTA AGCCCAAACG AAGACCCAGA TGAATTGGCA GTGAACTCAG AGGAAATGGA
AGCTTCAGTA CAATGAAATC ATTTGATGAT ATTTGAGCTC AAAATATCAT CATCTCTCCT TTTCTTAGTC AAGAAAATAT
GAACTTTGGT TATTGGTTTT AAGTTTTAGG AGTTAAATTT GGTTATCTCA TTTAACTATT TCATCTTATA ATGGTTCATT
GTTTACGTAC AGGATATATC TACTGGAAAC TTTTGTTTAT TGTGAGAGAA ATAAGAATTA TAAAGTATAA ACACATTGTG
GTTGTGAAGT TGATGATCAT AACTTGCTTT TTCATAATTG AATATATTAA TGTATGCAGT TGTCACAA

>Vigan.10G139800.01
ATGGCTACTC TATCAAGCTT CATCGCTTTG CCGAAGAATC CTAAGACCCA CTTTCTCTCA GGTTCCTCAT TGATGCCGAT
GGACAAATGC TTCTTGAAAA TCAGCTCTGG TGAACAATTT CCAGGCTCCT CTTTCAGAGC TAAAACATCA CGTAACCAAC
CACTTGTTAT TCGAGCTGGT GGTGATGGTG GAAGATCAAT AAGTGGAAGT ATTTTTGTTG GTGGTTTTGT ATTGGGAGGA
CTAATTGTTG GAGCATTGGG TTGTATTTAT GCACCTCAGA TAAGCATGGC AATAGCTGGA GCAGACCGTA AAGACTTGAT
GAGGAAACTT CCAAAATTTG TGTACGATGA AGATAAAGCT TTAGAGAAGA CTCGCAAGGT GCTGACTGAG AAAATAGCGC
AGCTAAATTC TGCCATAGAT GGTGTTTCTG CACAGTTGAG GTCAGACGTA AGCCCAAACG AAGACCCAGA TGAATTGGCA
GTGAACTCAG AGGAAATGGA AGCTTCAGTA CAATGA

>Vigan.10G139800.01
MATLSSFIAL PKNPKTHFLS GSSLMPMDKC FLKISSGEQF PGSSFRAKTS RNQPLVIRAG GDGGRSISGS IFVGGFVLGG
LIVGALGCIY APQISMAIAG ADRKDLMRKL PKFVYDEDKA LEKTRKVLTE KIAQLNSAID GVSAQLRSDV SPNEDPDELA
VNSEEMEASV Q*