GBrowse Details

Vigan.10G127400.01

Basic Information:
Name: Vigan.10G127400.01
Multiple alignment
Variant Information
Position: Chr10:18300698..18303259 (+ strand)
Length: 2562
Functional Information:
Description: Similar to Ubiquinol oxidase. [Q4F8G4, Vigna unguiculata]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: alternative oxidase activity (GO:0009916)
InterPro: Alternative oxidase (IPR002680)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.64,5.79,9.69,4.06,6.40,3.71,2.71,1 .48
Arabidopsis thaliana homolog: AT3G22370.1
Automatic updates:
Name: NM_001249237 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquinol oxidase 1, mitochondrial (AOX1), mRNA.
PubMed ID: 10225419 NCBI(pubmed)
8580775 NCBI(pubmed)
8290651 NCBI(pubmed)
Status: Known Variant
Name: NM_001249237 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alternative oxidase (AOX1), mRNA.
PubMed ID: 10225419 NCBI(pubmed)
8580775 NCBI(pubmed)
8290651 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:18300698..18300816 (+ strand)
Length: 119
Type: five_prime_UTR
Position: Chr10:18300817..18301104 (+ strand)
Length: 288
Type: CDS
Position: Chr10:18301273..18301401 (+ strand)
Length: 129
Type: CDS
Position: Chr10:18302410..18302898 (+ strand)
Length: 489
Type: CDS
Position: Chr10:18302987..18303046 (+ strand)
Length: 60
Type: CDS
Position: Chr10:18303047..18303259 (+ strand)
Length: 213
Type: three_prime_UTR

>Vigan.10G127400.01 class=Sequence position=Chr10:18300698..18303259 (+ strand)
TTCTTTCATC ACCAACAAAA ACTACTCATT TTCTCAACTT TCTTTCTGAT TTTCTCAACT CACTACATTT CTCTCTTTCG
TAATAATTCT ATCAGAGTCT AGATTTTGGT GCGTTGGTGA TGAGGATGAT GATGATTCGC GGCGGCAGCA ACCGAGTGGC
CAACACTGTC ATGTTGGTGG CGAAGGGTTT AAGCGGTGAA GTTGGTGGTG CAAGAGCGTT TTATGGCGGT GGTGTGAGGA
GTGAGAGCAC TTTGGTTTTA CCGGAGAAGG AGAAGATGGA GAAGAAGGTT GGTGCGTCTG GCGGTGGTGA AAACAAAGAT
CAAAAAGGGA CTGTGAGTTA TTGGGGCGTT GAACCCTCTA AGATCACCAA ACTAGATGGC ACAGAGTGGA AGTGGAATTG
CTTTAGGGTT TGTATAAATA TATATGCATT TCTTTCTATT TTATTTATGA ATAAGTTTCT GTATTAGTTT GCTGATTTTT
TACAGAAATT TTGAGAGAAG TTATTATCGA AGGTTGTTTG ATCTGTGTAA ATGTGTATAT TTGTTGATGA TGGTTTTGTT
TTTGTTGAAA TGAAGCCATG GGAGACATAC AAAGCAGATG TTTCAATTGA TCTGAACAAG CACCATGCAC CCACCACATT
TCTTGACAAA ATGGCTCTTT GGACTGTCAA AACTCTCCGA TACCCCACTG ATCTATTTTT CCAGGTATTT TGGATTTCTC
CCCCACACAA TAGGAACATA AAAAAGTAAA GAAAATAAAA CATTATTTCA CTTTTTGGAA AAGTAGAATA TCAAATATAA
ATAATTTTGT TATCTTATTT TATAATATTA AGCATTAAAA ACAATTCCTT TTACGCTTCT TTCAATGTGT TTTCTCTCTC
TCTATATCAA TCTTCTGCAT TAGTATTTTA TTTCTTGCCG TCTATTTTTC TTTTTTTTCT ACTTTCTACG AAAAATAAAT
GCAGCATATA TTCCTTTGGT TTCAGGGAAT GTATGTGTCT CTTTCAATTA TTTCACCGAA TAAAAAAGGA TCAGTAATTT
AATATAAGAC TTTTTCAACG GTTTTAAGGC TTTTAATGTT CGGTAAGAAT TCCAAAAATA AAAAATATTG TTTCGTGTAT
ACGTTCAATT TTTGTTTTAC CTGATTTGTG TTTTGAAATT ACAAGGTTTA ATTTTAATTA TTATGTATTA AATTCCATTA
GGAACGAAAT GTATTAATTC TGTTGTCCGT TATTAAATTG AATTTTTTAG ATAGAACGGT TTTATACAAA ATTTGGACCG
GTTCATTTAT GCTTTTAAAA ATATTTTGTA TTCATAAATG CTCAAACATG GTTATAAGCT GTTTAATATA TATATATTTT
TTTAACATAT TAATATTGTG TTATTGGGAA TCTTATTGGG TCTCTTTGTT TTTACTTGAA ATAAATTTGA TGCGCATAGT
ACATATGATG TTTGCATGTG GTTTGGTTCG GAGCCAGCGG TTTAGGCCAG TTGGATAACA AGCACATCAA AATAACTTTT
TTTTTCCTGA AAAAAGGAAA CTTAAACTTG TCATTAGTTC ATAAAAATAA ATGATGCCTT CCAAGTATGT GCTTAAGATG
GAACTCAAAA GAGTTTCTGA AACTCAGTTT TGAAAGAAAA CTCTTATTTT TGGAGTAATT TGTGTATGAA GTATATTTAA
TTTGTTAAGC GTGGTGTGTG GAAATGTAAC AGAGACGATA TGGATGCCGA GCAATGATGC TAGAAACAGT GGCAGCAGTG
CCTGGGATGG TAGCAGGCAT GCTATTGCAT TTGAAATCAC TTAGAAGATT TGAGCAGAGT GGGGGTTGGA TCAAAGCACT
GCTAGAAGAA GCAGAAAATG AACGGATGCA CCTAATGACG TTCATGGAAG TGGCAAAGCC AAAGTGGTAC GAGCGTGCAC
TGGTCATAAC TGTGCAAGGT GTTTTCTTCA ATGCATACTT CTTGGGGTAT ATGATATCTC CTAAATTTGC ACACCGCATG
GTGGGTTACC TTGAGGAGGA GGCAATACAC TCCTACACGG AGTTCCTCAA GGAATTGGAC AAGGGCAACA TACAGAATGT
GCCAGCTCCA GCCATTGCCA TCGACTACTG GCAGCTCCCA CCAGACTCCA CTTTAAGGGA TGTTGTCACG GTTGTCAGAG
CTGACGAGGC ACACCACCGT GATGTCAACC ACTTTGCTTC GGTAATTAAC CTTTTATATT ATATAGGGAG ATAACAAATA
TTTAATGGTT TTTCCTTCTC CTCATGGTTT TTTTTGTAAT GAATTGTAGG ACATACACTA CCAAGGGCGC GAGTTAAGAG
AGATTGCTGC TCCAGTTGGT TATCACTAGA GTCAATTTTT GGCTTCCAGT ATGAATACTG GTTTTGGTTA CAGAATAAAT
CTAATGATGC TGTAAATAAT GTGAAGCCTT GAATTTTTCA GAATCATATT GAAGCTTTTG TAGTTCTACA GTGCACTCTT
CAAAGTAAGT GGAGTTATAT GATACATGAT ATATTTTGCT TACTAATTCG TTGATTTCTT CTTCCATGTG AATATGGATT
TT

>Vigan.10G127400.01
TTCTTTCATC ACCAACAAAA ACTACTCATT TTCTCAACTT TCTTTCTGAT TTTCTCAACT CACTACATTT CTCTCTTTCG
TAATAATTCT ATCAGAGTCT AGATTTTGGT GCGTTGGTGA TGAGGATGAT GATGATTCGC GGCGGCAGCA ACCGAGTGGC
CAACACTGTC ATGTTGGTGG CGAAGGGTTT AAGCGGTGAA GTTGGTGGTG CAAGAGCGTT TTATGGCGGT GGTGTGAGGA
GTGAGAGCAC TTTGGTTTTA CCGGAGAAGG AGAAGATGGA GAAGAAGGTT GGTGCGTCTG GCGGTGGTGA AAACAAAGAT
CAAAAAGGGA CTGTGAGTTA TTGGGGCGTT GAACCCTCTA AGATCACCAA ACTAGATGGC ACAGAGTGGA AGTGGAATTG
CTTTAGGCCA TGGGAGACAT ACAAAGCAGA TGTTTCAATT GATCTGAACA AGCACCATGC ACCCACCACA TTTCTTGACA
AAATGGCTCT TTGGACTGTC AAAACTCTCC GATACCCCAC TGATCTATTT TTCCAGAGAC GATATGGATG CCGAGCAATG
ATGCTAGAAA CAGTGGCAGC AGTGCCTGGG ATGGTAGCAG GCATGCTATT GCATTTGAAA TCACTTAGAA GATTTGAGCA
GAGTGGGGGT TGGATCAAAG CACTGCTAGA AGAAGCAGAA AATGAACGGA TGCACCTAAT GACGTTCATG GAAGTGGCAA
AGCCAAAGTG GTACGAGCGT GCACTGGTCA TAACTGTGCA AGGTGTTTTC TTCAATGCAT ACTTCTTGGG GTATATGATA
TCTCCTAAAT TTGCACACCG CATGGTGGGT TACCTTGAGG AGGAGGCAAT ACACTCCTAC ACGGAGTTCC TCAAGGAATT
GGACAAGGGC AACATACAGA ATGTGCCAGC TCCAGCCATT GCCATCGACT ACTGGCAGCT CCCACCAGAC TCCACTTTAA
GGGATGTTGT CACGGTTGTC AGAGCTGACG AGGCACACCA CCGTGATGTC AACCACTTTG CTTCGGACAT ACACTACCAA
GGGCGCGAGT TAAGAGAGAT TGCTGCTCCA GTTGGTTATC ACTAGAGTCA ATTTTTGGCT TCCAGTATGA ATACTGGTTT
TGGTTACAGA ATAAATCTAA TGATGCTGTA AATAATGTGA AGCCTTGAAT TTTTCAGAAT CATATTGAAG CTTTTGTAGT
TCTACAGTGC ACTCTTCAAA GTAAGTGGAG TTATATGATA CATGATATAT TTTGCTTACT AATTCGTTGA TTTCTTCTTC
CATGTGAATA TGGATTTT

>Vigan.10G127400.01
ATGAGGATGA TGATGATTCG CGGCGGCAGC AACCGAGTGG CCAACACTGT CATGTTGGTG GCGAAGGGTT TAAGCGGTGA
AGTTGGTGGT GCAAGAGCGT TTTATGGCGG TGGTGTGAGG AGTGAGAGCA CTTTGGTTTT ACCGGAGAAG GAGAAGATGG
AGAAGAAGGT TGGTGCGTCT GGCGGTGGTG AAAACAAAGA TCAAAAAGGG ACTGTGAGTT ATTGGGGCGT TGAACCCTCT
AAGATCACCA AACTAGATGG CACAGAGTGG AAGTGGAATT GCTTTAGGCC ATGGGAGACA TACAAAGCAG ATGTTTCAAT
TGATCTGAAC AAGCACCATG CACCCACCAC ATTTCTTGAC AAAATGGCTC TTTGGACTGT CAAAACTCTC CGATACCCCA
CTGATCTATT TTTCCAGAGA CGATATGGAT GCCGAGCAAT GATGCTAGAA ACAGTGGCAG CAGTGCCTGG GATGGTAGCA
GGCATGCTAT TGCATTTGAA ATCACTTAGA AGATTTGAGC AGAGTGGGGG TTGGATCAAA GCACTGCTAG AAGAAGCAGA
AAATGAACGG ATGCACCTAA TGACGTTCAT GGAAGTGGCA AAGCCAAAGT GGTACGAGCG TGCACTGGTC ATAACTGTGC
AAGGTGTTTT CTTCAATGCA TACTTCTTGG GGTATATGAT ATCTCCTAAA TTTGCACACC GCATGGTGGG TTACCTTGAG
GAGGAGGCAA TACACTCCTA CACGGAGTTC CTCAAGGAAT TGGACAAGGG CAACATACAG AATGTGCCAG CTCCAGCCAT
TGCCATCGAC TACTGGCAGC TCCCACCAGA CTCCACTTTA AGGGATGTTG TCACGGTTGT CAGAGCTGAC GAGGCACACC
ACCGTGATGT CAACCACTTT GCTTCGGACA TACACTACCA AGGGCGCGAG TTAAGAGAGA TTGCTGCTCC AGTTGGTTAT
CACTAG

>Vigan.10G127400.01
MRMMMIRGGS NRVANTVMLV AKGLSGEVGG ARAFYGGGVR SESTLVLPEK EKMEKKVGAS GGGENKDQKG TVSYWGVEPS
KITKLDGTEW KWNCFRPWET YKADVSIDLN KHHAPTTFLD KMALWTVKTL RYPTDLFFQR RYGCRAMMLE TVAAVPGMVA
GMLLHLKSLR RFEQSGGWIK ALLEEAENER MHLMTFMEVA KPKWYERALV ITVQGVFFNA YFLGYMISPK FAHRMVGYLE
EEAIHSYTEF LKELDKGNIQ NVPAPAIAID YWQLPPDSTL RDVVTVVRAD EAHHRDVNHF ASDIHYQGRE LREIAAPVGY
H*