GBrowse Details

Vigan.10G110800.01

Basic Information:
Name: Vigan.10G110800.01
Multiple alignment
Variant Information
Position: Chr10:15021045..15024196 (+ strand)
Length: 3152
Functional Information:
Description: Similar to SNARE associated Golgi protein. [V5N8P5, Phaseolus vulgaris]
InterPro: SNARE associated Golgi protein (IPR015414)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:98.31,34.05,41.22,53.80,14.10,49.72, 53.86,29.67
Arabidopsis thaliana homolog: AT4G17790.1
Automatic updates:
Name: NM_001252706 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100793859 (LOC100793859), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001252706 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SNARE-associated domain-containing protein (LOC100793859), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:15021045..15021116 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr10:15021117..15021316 (+ strand)
Length: 200
Type: CDS
Position: Chr10:15022509..15022779 (+ strand)
Length: 271
Type: CDS
Position: Chr10:15022860..15023030 (+ strand)
Length: 171
Type: CDS
Position: Chr10:15023423..15023548 (+ strand)
Length: 126
Type: CDS
Position: Chr10:15023549..15024196 (+ strand)
Length: 648
Type: three_prime_UTR

>Vigan.10G110800.01 class=Sequence position=Chr10:15021045..15024196 (+ strand)
GTCTGTGTTA AACTCTTGTC TTTCTCTCTC TCCTCAAGAT AAGGCAGAGA AGAGAAGGAA AGAGAGAAGG AGATGGAGGG
TGCAAACACG GTGGTGGAGC AATCCGTACC AACGCCGTCC AAGTTTCCGT TGAGCTTTTG GGAAACCACG GTGGCTTCAA
CGGTGGCTTT GATTTTCGCT GTGGGTCTAG CCGGCGTGTA CCTCACCATG CCCGATTCCG ATTATAGCTT TCTGAAGCTA
CCCCGCACCC TCCAAGACCT TAAACTCCTC CGGTAATGTT TCAACCAACA TTCCCTTTTC TGTTATTTTA CACGTGAATG
TTGAAAAACA AAGAAAAGAC CAACCTTTAC TTCGTTTTCG TTGTTGGGGT TCCGCTTTCT TCTCTGTTTT CTTATTGGGT
GTTTTCATTC TGGTGCAAGA TGCGATTTTT ATCAATTTGG TATGATTAAT CTGTTGCAAG TTTCATTGCT TTTTAAATGA
ATGTTCTGAT TGTCAAATCT GGTTTATTCT GTTGAAAAGA TCTGACCCGG AACTGTGATT TCGGTCCAAT CATGATGATT
AATTAAAATC GTGATTTGAG AATGCTGTTT ATAAGGATTC TGTGTAAATA GGATTAGGCT ATTTTAATTT TTTTTTTCTC
TCTTCCCTTT CTCTATTTTA TCCCTTTGAA AAGCAGATCT GGAAAGGGTG TTGGGGTCTT GAGGGATCCC GCCGCTTGGA
GGGAGTACAT GAGAATATTA GGTTTGTTAT CGTTAATAAA TTAATCGAGG CTTTTGCTTT GAGTCAACAA GCTGGCATGT
TGCAAGTTGC GAGTATTTAT TGGCTGAAGG TTCACGTGCT ATTCTAGTAA GGGTTCGGTT AACAAAACTT TGGTGCAGTT
TGCAGTTAGT CCTAGGTTCT AACTTGTAAT CATCTTATTT TATTTTCTGA TAAACTTGTT TCCATATTTA AATAAAAAAA
ATTGCAAGTT GCAAGTTGTT GGACTTTGAC TGAGATCAAG CAATATGTTT TCTTATTATT CCACTGTATG TGACTTAGGA
TGAACCTTGG TTCAACGTTA TGGTTGTTGT TGTTGTTGAT GATGCCCCGT AACTTGGAGG CACAGGGTCA AATCGTCATA
GATTGACCAC AAGTCATGCA TATATAAGCT AAAATACCAA CGCTTTTGGG TGGTTAGCTG GAGAAAGAAA TAGACTACTT
GACGTAAAAC TGATGTATGT TTTCTCAATC ATTTGGTCTG CAGTGGGAGC AGGCTAAATG ATGGAATCTT CTTATGCTTT
GAGATAGTCT ATTGACTTTG CATTTCATTT CAATGAGTGG ATAATATATA TAATTCATCC TATGTTTTAA AAATGATTGT
GCTTGTGTGG AAAAGGGAAT TTGGTGGATC CTGAATGTAG AACGGGAAGT TGAATATAAT ACAAACTGTG TAATGCTTTA
TCTACCTTGT ATTTATTTTT GTAGAGATAA CCTTGAGAGC TATACAAGTG ACTACACTGC ACAAGTCTTG GTGGGATACT
GCGTGGTATA TATTTTCATG CAGACTTTCA TGATTCCAGG GACTGTTTTC ATGTCATTGC TTGCTGGAGC ACTCTTTGGA
GTCTTTAAAG GAATGGCACT GGTTGTGTTC ACTGCTACTG CAGGAGCTTC TTCATGCTAC TTCCTGTCTA AACTGATTGG
ACGTCCAATT CTCTCCTCCC TCTGGCCTGA AAAGTTGAAA TTCTTCCAAA CCCAGGTTTG TTTCAACTTC CCACCACATT
GGTTTTGATC CAATCTTCAC ATGGAAGTGA AAAAGTTATT TGTATGTATC CACAGGTGGC TAGAAGAAGA AAGAGTTTGT
TGAACTACAT GCTTTTTCTG AGATTGACTC CAACCCTGCC CAACACATTT ATTAATTTTG CTTCGCCAAT TGTGGATGTG
CCTTATCATA TCTTCTTCTT GGCAACTGTT ATTGGACTCA TACCCGCAGC TTATGTCACT GTCAAGGTAC GTAGCCTACC
AAAAACATTA CCTATTTGGA ACTGTTATTT TCACAATAAA TATTACAAGT AAACAAAAAA TAGGACAGAG AAGAGTGAAA
TGTATTAATG ATGTGATTCT AAGAGATAGA GAGAGAAGAA ATGGTGTACA GATTGTACAA ATAACACAAC TCATTCTCAC
TATTTGATTC TTCACTTCAA TTTTTTCAAA TTGTGAATGC TTCCCCATTT ATAAACTGAA ATAAATACTT CACATATTGA
AAAGGGTACT GTTATCTCAA TGAATCATAT GCACTTTTAT CATGAGTTTT TGTCTTTTTA ATTATTAAAC TATTGTATCT
TGGAAAGAAT ATTTCAGCTG TCTCTGATTG CATTTAAGTT TCTCGTTTTC TTATGCAGGC TGGGTTAGCT CTTGGAGAGT
TAAAATCCAT GGGGGATCTC TATGATTTCA ACTCAGTTGC TACCTTGTTC CTCATTGGTG TTGTGTCAGT TACACCCACA
TTAATGAACA AGAACGAATC ATAGCATTTT ATAGGCCAAG AATCATTGCT GTATGATGGC CTTGTTCTCC TGACAGCTAA
TATCAGTTCA GTATTTGTAC AGATCTCCAA AAGAAAAGAA AAAAAAAGCA ATTTCATTGT GATTCTCTGC AAATAGATTA
TTCCAAATGC TGCAGTAGTT CAAGACAAGC ATATGATTGG TTGGATCTAT GCTAGTGGCA AGAAACGAAG ATTGGCTGAA
TTAGTTATGT ACATTATTCA CGAGTTGATA TGTGTAAAAC ATTCACATAT TGAATGGTAG TTATTTTGTC ATGTTTACAT
CAACAAAAGA TGTTTTCTTC ATCTTTCCCA TCATTTGATT ATTACACATC AATCACTGGT TCACTTTCCG CGTCTTTCGT
ATTACAATCA ATATAAAGTA CATGAAATCA GTGCATCATG TGCATTGGGG GGCAGGTAGG ATATGGAACC TACTGCGCCA
ACCACGAATA TGAAGAAAAG TGTGTAAGCA TGGGTTGCTA TACTAAATAT TTTAAAAGTT CACACTATAC TAAATATTTT
AAAAGTTCAC ACTCTCAACT GAAATTAATC TTTATACTTG AACCAACTCA TGTTCTTCTC AATCAAGAAT CTTGAGTTTT
GGAATGTATA CTATGTTTTA AATAGAATAT CA

>Vigan.10G110800.01
GTCTGTGTTA AACTCTTGTC TTTCTCTCTC TCCTCAAGAT AAGGCAGAGA AGAGAAGGAA AGAGAGAAGG AGATGGAGGG
TGCAAACACG GTGGTGGAGC AATCCGTACC AACGCCGTCC AAGTTTCCGT TGAGCTTTTG GGAAACCACG GTGGCTTCAA
CGGTGGCTTT GATTTTCGCT GTGGGTCTAG CCGGCGTGTA CCTCACCATG CCCGATTCCG ATTATAGCTT TCTGAAGCTA
CCCCGCACCC TCCAAGACCT TAAACTCCTC CGAGATAACC TTGAGAGCTA TACAAGTGAC TACACTGCAC AAGTCTTGGT
GGGATACTGC GTGGTATATA TTTTCATGCA GACTTTCATG ATTCCAGGGA CTGTTTTCAT GTCATTGCTT GCTGGAGCAC
TCTTTGGAGT CTTTAAAGGA ATGGCACTGG TTGTGTTCAC TGCTACTGCA GGAGCTTCTT CATGCTACTT CCTGTCTAAA
CTGATTGGAC GTCCAATTCT CTCCTCCCTC TGGCCTGAAA AGTTGAAATT CTTCCAAACC CAGGTGGCTA GAAGAAGAAA
GAGTTTGTTG AACTACATGC TTTTTCTGAG ATTGACTCCA ACCCTGCCCA ACACATTTAT TAATTTTGCT TCGCCAATTG
TGGATGTGCC TTATCATATC TTCTTCTTGG CAACTGTTAT TGGACTCATA CCCGCAGCTT ATGTCACTGT CAAGGCTGGG
TTAGCTCTTG GAGAGTTAAA ATCCATGGGG GATCTCTATG ATTTCAACTC AGTTGCTACC TTGTTCCTCA TTGGTGTTGT
GTCAGTTACA CCCACATTAA TGAACAAGAA CGAATCATAG CATTTTATAG GCCAAGAATC ATTGCTGTAT GATGGCCTTG
TTCTCCTGAC AGCTAATATC AGTTCAGTAT TTGTACAGAT CTCCAAAAGA AAAGAAAAAA AAAGCAATTT CATTGTGATT
CTCTGCAAAT AGATTATTCC AAATGCTGCA GTAGTTCAAG ACAAGCATAT GATTGGTTGG ATCTATGCTA GTGGCAAGAA
ACGAAGATTG GCTGAATTAG TTATGTACAT TATTCACGAG TTGATATGTG TAAAACATTC ACATATTGAA TGGTAGTTAT
TTTGTCATGT TTACATCAAC AAAAGATGTT TTCTTCATCT TTCCCATCAT TTGATTATTA CACATCAATC ACTGGTTCAC
TTTCCGCGTC TTTCGTATTA CAATCAATAT AAAGTACATG AAATCAGTGC ATCATGTGCA TTGGGGGGCA GGTAGGATAT
GGAACCTACT GCGCCAACCA CGAATATGAA GAAAAGTGTG TAAGCATGGG TTGCTATACT AAATATTTTA AAAGTTCACA
CTATACTAAA TATTTTAAAA GTTCACACTC TCAACTGAAA TTAATCTTTA TACTTGAACC AACTCATGTT CTTCTCAATC
AAGAATCTTG AGTTTTGGAA TGTATACTAT GTTTTAAATA GAATATCA

>Vigan.10G110800.01
ATGGAGGGTG CAAACACGGT GGTGGAGCAA TCCGTACCAA CGCCGTCCAA GTTTCCGTTG AGCTTTTGGG AAACCACGGT
GGCTTCAACG GTGGCTTTGA TTTTCGCTGT GGGTCTAGCC GGCGTGTACC TCACCATGCC CGATTCCGAT TATAGCTTTC
TGAAGCTACC CCGCACCCTC CAAGACCTTA AACTCCTCCG AGATAACCTT GAGAGCTATA CAAGTGACTA CACTGCACAA
GTCTTGGTGG GATACTGCGT GGTATATATT TTCATGCAGA CTTTCATGAT TCCAGGGACT GTTTTCATGT CATTGCTTGC
TGGAGCACTC TTTGGAGTCT TTAAAGGAAT GGCACTGGTT GTGTTCACTG CTACTGCAGG AGCTTCTTCA TGCTACTTCC
TGTCTAAACT GATTGGACGT CCAATTCTCT CCTCCCTCTG GCCTGAAAAG TTGAAATTCT TCCAAACCCA GGTGGCTAGA
AGAAGAAAGA GTTTGTTGAA CTACATGCTT TTTCTGAGAT TGACTCCAAC CCTGCCCAAC ACATTTATTA ATTTTGCTTC
GCCAATTGTG GATGTGCCTT ATCATATCTT CTTCTTGGCA ACTGTTATTG GACTCATACC CGCAGCTTAT GTCACTGTCA
AGGCTGGGTT AGCTCTTGGA GAGTTAAAAT CCATGGGGGA TCTCTATGAT TTCAACTCAG TTGCTACCTT GTTCCTCATT
GGTGTTGTGT CAGTTACACC CACATTAATG AACAAGAACG AATCATAG

>Vigan.10G110800.01
MEGANTVVEQ SVPTPSKFPL SFWETTVAST VALIFAVGLA GVYLTMPDSD YSFLKLPRTL QDLKLLRDNL ESYTSDYTAQ
VLVGYCVVYI FMQTFMIPGT VFMSLLAGAL FGVFKGMALV VFTATAGASS CYFLSKLIGR PILSSLWPEK LKFFQTQVAR
RRKSLLNYML FLRLTPTLPN TFINFASPIV DVPYHIFFLA TVIGLIPAAY VTVKAGLALG ELKSMGDLYD FNSVATLFLI
GVVSVTPTLM NKNES*