GBrowse Details

Vigan.10G055400.01

Basic Information:
Name: Vigan.10G055400.01
Multiple alignment
Variant Information
Position: Chr10:5692441..5695585 (+ strand)
Length: 3145
Functional Information:
Description: Similar to Alpha-1,4-glucan-protein synthase [UDP-forming]-like protein. [T2DNR4, Phaseolus vulgaris]
GO: Biological Process: cellulose biosynthetic process (GO:0030244)
Molecular Function: intramolecular transferase activity (GO:0016866)
InterPro: Reversibly glycosylated polypeptide family (IPR004901)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:60.79,109.86,173.83,56.77,328.69,311 .98,253.50,150.21
Arabidopsis thaliana homolog: AT3G02230.1, AT3G08900.1, AT5G15650.1, AT5G50750.1
Automatic updates:
Name: BT095550 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-25O23 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255964 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alpha-1,4-glucan-protein synthase [UDP-forming]-like (LOC100809983), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255964 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max reversibly glycosylated polypeptide (LOC100809983), mRNA.
PubMed ID: 28352959 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:5692441..5692509 (+ strand)
Length: 69
Type: five_prime_UTR
Position: Chr10:5692510..5692833 (+ strand)
Length: 324
Type: CDS
Position: Chr10:5694277..5694527 (+ strand)
Length: 251
Type: CDS
Position: Chr10:5694680..5694848 (+ strand)
Length: 169
Type: CDS
Position: Chr10:5695029..5695376 (+ strand)
Length: 348
Type: CDS
Position: Chr10:5695377..5695585 (+ strand)
Length: 209
Type: three_prime_UTR

>Vigan.10G055400.01 class=Sequence position=Chr10:5692441..5695585 (+ strand)
TTCACATTTT CTGCGTTGAA AACTCGACAC TCTCTCCATC TTTCTTCCTT CTCTTACCTT TCCTCTCCAA TGGCTGACCC
TTCTCCCAAA CCCGTTCCTC TGCTGAAGGA CGAGCTCGAC ATCGTGATCC CCACGATCCG AAACCTCGAC TTCCTCGAGA
TGTGGCGGCC ATTCTTCGAG CAGTACCACC TCATCATCGT TCAGGATGGT GATCCCAATA AGATCATCAA AGTCCCCGAA
GGCTTTGACT ACGAGCTCTA CAATCGCAAC GATATCAACA GGATCTTGGG CCCCAAGGCC AATTGCATCT CCTTCAAGGA
CTCTGCTTGT CGCTGCTTCG GCTACATGGT CTCCAAGAAG AAGTACATCT ACACCATCGA CGACGATTGC TTCGTAATTA
TAACCTACCC ATCTCCGGAT CTTTTGATTC TTATACTTTC TTTGCCTGTG AAACGTGAAT TTGAGTTAAA GTTGTGTGCT
TGCTTGTGGG TTTTCTGATG GGTTGGGAAT TATGCTTCTT GATTTAGTTT TATAGTGGAT TTCTTTAAGT TGGTTTTTAA
TTTTGGACTT GAAAGAATGT GGGTTTGACT TAAAGTTGAA AGCTTGTGGT GGATTTTCTG ATGGGTCGGG AATTCTGCTT
CCTGAGATTT TGTGCCTTTT GACTTGGAAA ATTGTGGGTT TGGGTATAAG TTGGGGCTTG CATTCGCGTT TTCTGATGGT
ATGGGGATTC TTAACGTCTT TTCCTTTTGC TGTGGATGTT GTTTCCTATT CTTACGGTTG ATTGATTTCA GTTATTTGGT
TTTTTAGTGC GTTCTTAACG AGGGTTTGGT GGGGTTTTGA AACGGGGCTA GATCTAAGTA CGGATTTGAT CTGTTGACTA
AATGGTTGTT GTTTTTCCAT TTGTTTTAAG CATTCGTGAT TTGTTATTAG TTTGTGTATG TGTGTGCATG TGGCATTTAC
GATCTGTTGT TTTCAATTGT TGTTAGAGGT TCCTTATTTG GTTGTTCTCT CGTTTGAGAC TGGGGTGTGT TCGGATCTAG
AATGACTGAT TCTTGAAAAT TGGTATGATT CTATGAGAAT AGTTTACTTG GATTTGGGTG AATAGGATTT CATTTGAATC
AATAAGCTCT TTTTACCCGT TTTAATTGTT ATAATGTTTC GAGTGTTTTT GGATAGTAAT GATGGTTTCG AATGGAAATA
TTTTAAGTGA TGGTTTCGAA TGGAAATATT TTAAGTGATG GTTTATTTGA GGCTGGAAAT CACTCGAATT TGATCTGAAA
TTGATTTTCC TTTGAATTGA TGATCTTTTT ATTTATTTAT TTACCCATTT TATCTATTTT ATTTTATTTT TAATTAATGC
AATAGAGTGA ATTTATTTGG TCGTTATAAC TCCAATTAAA TAGTCGGGTT TTTTATATGA CATTTTTGTA ACTTAAAAAT
TGATTTTTAA GCGAATACAA CTAGATCTAC AAACTGTTGT CATTAGTTTG TGTTTTTGTT AATGACTATG GGGCAAAGAA
TAATGTGAAC AAATGTGGAA ATATTTCCCT CCTAATATTT TTGAATCATT TCAACCCTAA TTATCCATTC TTTTTTCTTT
TACCTTTTTT GTTGGCATTG GGAGACAGAA TGATTGCCAT TCAAATTGAG GGTGGATCTT ATTGTCTCTG TTTCCTTTTT
CTATGAATCT GAATTTCAAA CAAGGATTGA AACATTGACT CTTGTTTGGT TACTGCTGTC AGTAAAGCCT TTGACTGTCT
TTGGTCCAGG AATGTACTAT GTTCAATACA ACTTGTAGCC ATTTTTTTTC TGAGTATCTC CTATTTTCAT GTGTAGGTTG
CTAAGGACCC TTCTGGAAAA GATATCAATG CACTCGAACA GCACATTAAG AATCTGCTAA GTCCAGCCAC TCCATTTTTC
TTCAACACCC TTTATGATCC TTATAGAGAA GGTGCTGATT TCGTCCGTGG ATACCCTTTC AGTCTTCGTG AGGGTGCCCC
CACTGCTGTT TCTCACGGTC TCTGGCTCAA CATACCTGAT TATGATGCAC CAACACAGCT TGTCAAACCC CGAGAGAGGA
ACACCAGGTA CCTGCTACGC CATTTTACAG TTCAGTTTTG ATACATGGAA CAATTTTAAA TCATAGGACA ATGTACAAAA
TTCATGCTGT TCATGTATTG CTATCAAGTT CATACTTAGA TGTTAATGGC CTAGCTAAAT TAGTGAGTGT ATATTTCAGG
TATGTTGATG CTGTTCTTAC CATTCCTAAA GGAACATTGT TCCCTATGTG TGGTATGAAT CTGGCCTTCG ATCGTGAGCT
GATTGGACCT GCAATGTACT TTGGACTCAT GGGAGATGGT CAACCTATCG GACGATACGA TGATATGTGG GCTGGTTGGT
GTGTTAAGGT ATACCAGTCA CTAGTCCTTT TTTCTGTTAT CAACCCTGAA TCAATGAGAC AAAGGTTACG AATGTGCTAT
CACCAATGTG ACAATGTTAT ATGAATTAGA ACAGTGTCGT ACATATGTCA GAAAACGATT TCTAGCTATA TTAAGCACAT
TTGTTTGAAC TGTTGCATGG AATTGCAGGT TATCTGTGAC CATTTGGGGT TGGGAGTGAA GACGGGGCTT CCATACATAT
GGCACAGCAA AGCAAGCAAC CCATTTGTGA ATCTGAAAAA GGAGTACAAA GGCATCTTCT GGCAAGAAGA GATCATTCCC
TTTTTCCAAA GTGCCACCCT CCCAAAAGAC TGCACCTCTG TCCAAAAATG CTACATTGAA CTTTCGAAGC AAGTGAAAGA
GAAGCTTGGT GCTGTTGATC CCTACTTCAA CAAGCTTGCA GATGCCATGG TCACTTGGAT TGAAGCTTGG GATGAGCTTA
ACAACAACAC CTCTGAACAA ACTTCTTCAA AGCAAGCCAA TGGGGCTGCC AAGTGATCCA ATCTAATACC CTTTAAAACT
TGCGGACTTT TCTTTTCATT GGAGTAGTTT CTTCCTTGTC AGCTTTCGCT CATCATTTTT TTTATAATGC AAGATTATAG
ACAACTTTAT TGATATTCAT GTCACCATTA TTACTATTTA TATATTATTA TATTATTATT ATTATTCTTA TGGTTTTAGC
AGTTCTTGTG ATTTTCTATG TTTAG

>Vigan.10G055400.01
TTCACATTTT CTGCGTTGAA AACTCGACAC TCTCTCCATC TTTCTTCCTT CTCTTACCTT TCCTCTCCAA TGGCTGACCC
TTCTCCCAAA CCCGTTCCTC TGCTGAAGGA CGAGCTCGAC ATCGTGATCC CCACGATCCG AAACCTCGAC TTCCTCGAGA
TGTGGCGGCC ATTCTTCGAG CAGTACCACC TCATCATCGT TCAGGATGGT GATCCCAATA AGATCATCAA AGTCCCCGAA
GGCTTTGACT ACGAGCTCTA CAATCGCAAC GATATCAACA GGATCTTGGG CCCCAAGGCC AATTGCATCT CCTTCAAGGA
CTCTGCTTGT CGCTGCTTCG GCTACATGGT CTCCAAGAAG AAGTACATCT ACACCATCGA CGACGATTGC TTCGTTGCTA
AGGACCCTTC TGGAAAAGAT ATCAATGCAC TCGAACAGCA CATTAAGAAT CTGCTAAGTC CAGCCACTCC ATTTTTCTTC
AACACCCTTT ATGATCCTTA TAGAGAAGGT GCTGATTTCG TCCGTGGATA CCCTTTCAGT CTTCGTGAGG GTGCCCCCAC
TGCTGTTTCT CACGGTCTCT GGCTCAACAT ACCTGATTAT GATGCACCAA CACAGCTTGT CAAACCCCGA GAGAGGAACA
CCAGGTATGT TGATGCTGTT CTTACCATTC CTAAAGGAAC ATTGTTCCCT ATGTGTGGTA TGAATCTGGC CTTCGATCGT
GAGCTGATTG GACCTGCAAT GTACTTTGGA CTCATGGGAG ATGGTCAACC TATCGGACGA TACGATGATA TGTGGGCTGG
TTGGTGTGTT AAGGTTATCT GTGACCATTT GGGGTTGGGA GTGAAGACGG GGCTTCCATA CATATGGCAC AGCAAAGCAA
GCAACCCATT TGTGAATCTG AAAAAGGAGT ACAAAGGCAT CTTCTGGCAA GAAGAGATCA TTCCCTTTTT CCAAAGTGCC
ACCCTCCCAA AAGACTGCAC CTCTGTCCAA AAATGCTACA TTGAACTTTC GAAGCAAGTG AAAGAGAAGC TTGGTGCTGT
TGATCCCTAC TTCAACAAGC TTGCAGATGC CATGGTCACT TGGATTGAAG CTTGGGATGA GCTTAACAAC AACACCTCTG
AACAAACTTC TTCAAAGCAA GCCAATGGGG CTGCCAAGTG ATCCAATCTA ATACCCTTTA AAACTTGCGG ACTTTTCTTT
TCATTGGAGT AGTTTCTTCC TTGTCAGCTT TCGCTCATCA TTTTTTTTAT AATGCAAGAT TATAGACAAC TTTATTGATA
TTCATGTCAC CATTATTACT ATTTATATAT TATTATATTA TTATTATTAT TCTTATGGTT TTAGCAGTTC TTGTGATTTT
CTATGTTTAG 

>Vigan.10G055400.01
ATGGCTGACC CTTCTCCCAA ACCCGTTCCT CTGCTGAAGG ACGAGCTCGA CATCGTGATC CCCACGATCC GAAACCTCGA
CTTCCTCGAG ATGTGGCGGC CATTCTTCGA GCAGTACCAC CTCATCATCG TTCAGGATGG TGATCCCAAT AAGATCATCA
AAGTCCCCGA AGGCTTTGAC TACGAGCTCT ACAATCGCAA CGATATCAAC AGGATCTTGG GCCCCAAGGC CAATTGCATC
TCCTTCAAGG ACTCTGCTTG TCGCTGCTTC GGCTACATGG TCTCCAAGAA GAAGTACATC TACACCATCG ACGACGATTG
CTTCGTTGCT AAGGACCCTT CTGGAAAAGA TATCAATGCA CTCGAACAGC ACATTAAGAA TCTGCTAAGT CCAGCCACTC
CATTTTTCTT CAACACCCTT TATGATCCTT ATAGAGAAGG TGCTGATTTC GTCCGTGGAT ACCCTTTCAG TCTTCGTGAG
GGTGCCCCCA CTGCTGTTTC TCACGGTCTC TGGCTCAACA TACCTGATTA TGATGCACCA ACACAGCTTG TCAAACCCCG
AGAGAGGAAC ACCAGGTATG TTGATGCTGT TCTTACCATT CCTAAAGGAA CATTGTTCCC TATGTGTGGT ATGAATCTGG
CCTTCGATCG TGAGCTGATT GGACCTGCAA TGTACTTTGG ACTCATGGGA GATGGTCAAC CTATCGGACG ATACGATGAT
ATGTGGGCTG GTTGGTGTGT TAAGGTTATC TGTGACCATT TGGGGTTGGG AGTGAAGACG GGGCTTCCAT ACATATGGCA
CAGCAAAGCA AGCAACCCAT TTGTGAATCT GAAAAAGGAG TACAAAGGCA TCTTCTGGCA AGAAGAGATC ATTCCCTTTT
TCCAAAGTGC CACCCTCCCA AAAGACTGCA CCTCTGTCCA AAAATGCTAC ATTGAACTTT CGAAGCAAGT GAAAGAGAAG
CTTGGTGCTG TTGATCCCTA CTTCAACAAG CTTGCAGATG CCATGGTCAC TTGGATTGAA GCTTGGGATG AGCTTAACAA
CAACACCTCT GAACAAACTT CTTCAAAGCA AGCCAATGGG GCTGCCAAGT GA

>Vigan.10G055400.01
MADPSPKPVP LLKDELDIVI PTIRNLDFLE MWRPFFEQYH LIIVQDGDPN KIIKVPEGFD YELYNRNDIN RILGPKANCI
SFKDSACRCF GYMVSKKKYI YTIDDDCFVA KDPSGKDINA LEQHIKNLLS PATPFFFNTL YDPYREGADF VRGYPFSLRE
GAPTAVSHGL WLNIPDYDAP TQLVKPRERN TRYVDAVLTI PKGTLFPMCG MNLAFDRELI GPAMYFGLMG DGQPIGRYDD
MWAGWCVKVI CDHLGLGVKT GLPYIWHSKA SNPFVNLKKE YKGIFWQEEI IPFFQSATLP KDCTSVQKCY IELSKQVKEK
LGAVDPYFNK LADAMVTWIE AWDELNNNTS EQTSSKQANG AAK*