GBrowse Details

Vigan.10G042200.01

Basic Information:
Name: Vigan.10G042200.01
Multiple alignment
Variant Information
Position: Chr10:4217837..4221301 (+ strand)
Length: 3465
Functional Information:
Description: Similar to CASP-like protein 1. [C6T1G0, Glycine max]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant subgroup (IPR006459)
Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.07,0.70,5.58,0.26,19.75, 0.03
Arabidopsis thaliana homolog: AT5G15290.1
Structure :
Position: Chr10:4217837..4217940 (+ strand)
Length: 104
Type: five_prime_UTR
Position: Chr10:4217941..4218161 (+ strand)
Length: 221
Type: CDS
Position: Chr10:4218688..4218811 (+ strand)
Length: 124
Type: CDS
Position: Chr10:4219837..4220052 (+ strand)
Length: 216
Type: CDS
Position: Chr10:4220053..4221301 (+ strand)
Length: 1249
Type: three_prime_UTR

>Vigan.10G042200.01 class=Sequence position=Chr10:4217837..4221301 (+ strand)
ATTTGACATG GCTGTTCAAC ACCTATATAA ATGCATGTTT TGGATACCTA TAGTTAAATA AGAAGTGTGT GTGCTAAGAG
AGAAAACATT AAATTGGAAG AGAAATGAAG GGAAGTTCAA TTGAAGTTGG AGAAGCCATG AAGGGTGCAT CCCCAAGAAA
AGGGGTGACA AGAGGGTTAT CTATAATGGA CTTTGTTTTG AGAATTATTG CAGCTGTTGC AACCCTAGGT GCTGCATTGG
CCATGGCAAC TACCAATGAG ACCCTTCCAT TTGCCACTCA ATTCATCAAA TTCAGAGCTC AATTTGATGA CCTTCCCTCA
CTTGTGTAAG TGTGTGTTTA GTTACACAAA AATATACTTT CACACATTTG ATATTATTTT TCCTTATTTT TACTTTTTTT
TTTAAATTAC AAAAGTTTAT TTTTTAAAGT CTATTGTACT CTGGTTAAAT GTGTCAAATG AATGTTAATG TATGTTATAC
TACTCTTATT CTCAGTTACA AGTGATTTTA ATATCAAGTT GAAGAAACTA GTATAACATA TGAAGGAATG ATACTATGAC
ACACTTTTAA ATTCATTTGA CACAGAATAT AAGGATAAAA TGATCATAAA AGTATACATT TTTGTACTTT TTCAAGAAAG
AAAAAAAGTA AATTATAAGA AATGATAGTG TCAAATCAAT GTAAAAAATT TAGGTGTGTT AAATGATTAT TTTTTCATAA
CATATTAACC ATGTTTAAGT GCTTTTAACT TAAAATCAGT TTTTTATATC TTCACCTTGA GAAGTGATTT TTGTGTATCT
GTAATTATGT GTTTGAGTTT ACGTTGGATG TGTGTGAACA TGGAAATCCA GGTTTTTTGT GATGGGCAAC TCTGTTGTTT
GTGGCTATCT TGTGCTTTCA CTTGTTCTAT CTATCTTCCA CATAGTGAGG AGCACTGCAG TGAAAAGTAG GATTCTCCTT
GTTGCTTTTG ACACGGTAAA CAAACAGATT CTCCTTAATT ATAATACCAA GCCAAATTTT TATGGATGAT TTTCATATTT
AATACTCACT TCTTCTTTTC AAGTGAAATC TTTTCATTAT CATCATCCAA AGTTTGTGAT ATTTTTTTAT TAGGTTTCTT
AAATTTGAAA TTTTTTTATT AAGTTTTTAT TAATTTTTTT ATATAAAATA TTTTAAAAAA TTATATTTAA CAATTGAGTT
TTTATTTTTA ACTTTTTTTT CAAGTATCAT TATTTACTTT ATGATCTTTT CTTTTTGTCT CTGTGTTATA GATGTGAAGA
AAAAAAAAGA AATCAATTAA AAAATATAAG CTTTTTGAGT ATTTAAATCG ATAAAAATAT TTAATAAAAT CATATTTGAA
AATACTTAAA TATATGTTTG AAACCTAATC ATTTATTTTA TTTTATTTTC TTTCCAAACT AGATTAAAAA AGAAGGCAAA
TTAAAATAGA AAATAGTTTA AATATATTGT CAACCGGGTG AAGAGTTTTT ACAATATTAT TCAAACACGA ATTCCCATGT
AACATTTTTT AATCTATAAT AAAAACCTTA AAAAAGTCAT ACTTATGTGT GATTTTAATT GATTAATGGT ATAAAGTTTT
TATATTATAC ACATATCCTG AATTTTGTTA CTATGCATAT AAATTTTACA CCATCAATAA ATAATTATTA ATATGGATTT
TAAAATTATT ATGGTAAAAA GCCAATAAAT TGTATTAAAC ATACTATAAA TTTGTTTTGT AATGTGCAAG CATAAATAAG
TTATATTTTT CTCGTGTAAA AGTTAAACTC AATAAAAACA TATCATAGAA TTAGAACCTT AAAATAAAGA CTCTTGATGC
TGTCATCATT TTCCATTTAG TGAGAAATAA TGTCTGAAAC AAAGCAGAGG TTTAACCACA CAGTGGTCAA TAATTCATGC
TACTTAGTTT TTAATGATGT TAATTCCATA GTTGTTATTT TTAAGATTGT TGATGAAGTT GTGGTTAATG TTGTAAAAAG
GTAATGTTGG GTCTGATCAC AGCCGCAGCC TCTGCAGCAA CATCGATAGT GTACATAGCA CACAATGGAA ACACAGGTGC
CAATTGGTTT GCAATCTGCC AACAATACAA CAACTTCTGC GAACGCATTT CGGGTTCTCT CATTGGCTCT TACATTGCTG
TTGCTCTCTT CACAATACTA ATCATCCTAT CAGTTGTTGC AATCTCTCGA AACTGATGTT CTATGCCCTT TTCTTCATAT
AACTTAGTTT GAAGGAAAGA AAACAAAAAC TGTCTTCATG AACATTTTTC TAGTGTGCAT TTGTGGTTTG TAATCCAAGT
GTGAAAATGT TGTTGAATTG TGGTTTCTGG GTGTAATCGA TGAGTAACAG CAGAGCATGA TTACATTGAA CCTTTGTGTT
AAATTTGAAA TACTTGCAAG TTGCACATTC TAATGAAACA TGTACATAAA ATATATATAT ATATATTAAA AAAGAAGAAA
AAAAAGAGTA ACAAGAGGTT TTATACCACA AAAATTAGAA TTCCGAATAC TGATATACCC TGCAGCTTCC TCCTTGTGCT
ATGTTAGTAT GGCCACAAGT TCATCTATTG ACTTCAATGT CTTCTCGTAG TATAGGTACG ATTCATACAC CTTTGGCGTT
CTAATATACC GATCAAACTG AACAAAATGA AAACCAAAAA CATTAAAAGT GACACAGTCC TTTAACTGAT TAGCAGTGAC
AGAGACAGTA GTAATAAGAG TGTACCTCTT CAAAGTTGGA GATCAACTCA TTAGCAGTTC TGACATAGTC CTTGCGACGA
TTCTGAGGTA AGGTAGAGAA AGCAGTTCTC AAATCCTGGT CAAGGTAGGC CTGTTTGATG CGTATGTAGA ACATGATATA
CCTCCAAGAC AGAGTCTCCA GAGGCTCCCT CATGTCGTGG AGCCCTTCGG CGGTTTGTTT TATGCGGGCC ACCGCGTCTT
CCGGGGAAAG CCCGGGCCCG AAGAAGTGCT CCCAGATGAA GGAGCGGGTG CCCCAGTTCT GGGCCAGGGC TTGTTGGGTG
CTGCCATGCA CTGCTACTAC AGCTGTGGAA GTGGCGAGGA ATGTGGAGAT GAGGTTCCTT CTGTTGGGGC CTGTGTGGGG
GAGAGGGGTG GAGGTGGCGG CGGTGGTGGT GGTGGCGGTG GAGGAGGGCT TTTTGTGGTG GGTTTTGAGG TGGGCGTGGA
GGAGTGTGGT GGCGTGAGTG AAGCTGGACA TGGTTTGTGT TTGGATAACG TGATTTGGGG ACGTAGGTGG TGTTTGAGGG
AGTGAGGTTT GAGTGGTGGG AAGGGAAATT TTGGAATCTG AGGCTTCGGG CAGGGGGTAG GCTGACCCTT CTGACCGTGC
TGACCGCTCT AAGAGCTTGA TGGTTTGATG TACATGATGC GCATGTGGAA TATTTATCTT CCTGAGATTT GGAACATGTA
CATGTTTCAT TTTTCTTAAT TTCGC

>Vigan.10G042200.01
ATTTGACATG GCTGTTCAAC ACCTATATAA ATGCATGTTT TGGATACCTA TAGTTAAATA AGAAGTGTGT GTGCTAAGAG
AGAAAACATT AAATTGGAAG AGAAATGAAG GGAAGTTCAA TTGAAGTTGG AGAAGCCATG AAGGGTGCAT CCCCAAGAAA
AGGGGTGACA AGAGGGTTAT CTATAATGGA CTTTGTTTTG AGAATTATTG CAGCTGTTGC AACCCTAGGT GCTGCATTGG
CCATGGCAAC TACCAATGAG ACCCTTCCAT TTGCCACTCA ATTCATCAAA TTCAGAGCTC AATTTGATGA CCTTCCCTCA
CTTGTGTTTT TTGTGATGGG CAACTCTGTT GTTTGTGGCT ATCTTGTGCT TTCACTTGTT CTATCTATCT TCCACATAGT
GAGGAGCACT GCAGTGAAAA GTAGGATTCT CCTTGTTGCT TTTGACACGG TAATGTTGGG TCTGATCACA GCCGCAGCCT
CTGCAGCAAC ATCGATAGTG TACATAGCAC ACAATGGAAA CACAGGTGCC AATTGGTTTG CAATCTGCCA ACAATACAAC
AACTTCTGCG AACGCATTTC GGGTTCTCTC ATTGGCTCTT ACATTGCTGT TGCTCTCTTC ACAATACTAA TCATCCTATC
AGTTGTTGCA ATCTCTCGAA ACTGATGTTC TATGCCCTTT TCTTCATATA ACTTAGTTTG AAGGAAAGAA AACAAAAACT
GTCTTCATGA ACATTTTTCT AGTGTGCATT TGTGGTTTGT AATCCAAGTG TGAAAATGTT GTTGAATTGT GGTTTCTGGG
TGTAATCGAT GAGTAACAGC AGAGCATGAT TACATTGAAC CTTTGTGTTA AATTTGAAAT ACTTGCAAGT TGCACATTCT
AATGAAACAT GTACATAAAA TATATATATA TATATTAAAA AAGAAGAAAA AAAAGAGTAA CAAGAGGTTT TATACCACAA
AAATTAGAAT TCCGAATACT GATATACCCT GCAGCTTCCT CCTTGTGCTA TGTTAGTATG GCCACAAGTT CATCTATTGA
CTTCAATGTC TTCTCGTAGT ATAGGTACGA TTCATACACC TTTGGCGTTC TAATATACCG ATCAAACTGA ACAAAATGAA
AACCAAAAAC ATTAAAAGTG ACACAGTCCT TTAACTGATT AGCAGTGACA GAGACAGTAG TAATAAGAGT GTACCTCTTC
AAAGTTGGAG ATCAACTCAT TAGCAGTTCT GACATAGTCC TTGCGACGAT TCTGAGGTAA GGTAGAGAAA GCAGTTCTCA
AATCCTGGTC AAGGTAGGCC TGTTTGATGC GTATGTAGAA CATGATATAC CTCCAAGACA GAGTCTCCAG AGGCTCCCTC
ATGTCGTGGA GCCCTTCGGC GGTTTGTTTT ATGCGGGCCA CCGCGTCTTC CGGGGAAAGC CCGGGCCCGA AGAAGTGCTC
CCAGATGAAG GAGCGGGTGC CCCAGTTCTG GGCCAGGGCT TGTTGGGTGC TGCCATGCAC TGCTACTACA GCTGTGGAAG
TGGCGAGGAA TGTGGAGATG AGGTTCCTTC TGTTGGGGCC TGTGTGGGGG AGAGGGGTGG AGGTGGCGGC GGTGGTGGTG
GTGGCGGTGG AGGAGGGCTT TTTGTGGTGG GTTTTGAGGT GGGCGTGGAG GAGTGTGGTG GCGTGAGTGA AGCTGGACAT
GGTTTGTGTT TGGATAACGT GATTTGGGGA CGTAGGTGGT GTTTGAGGGA GTGAGGTTTG AGTGGTGGGA AGGGAAATTT
TGGAATCTGA GGCTTCGGGC AGGGGGTAGG CTGACCCTTC TGACCGTGCT GACCGCTCTA AGAGCTTGAT GGTTTGATGT
ACATGATGCG CATGTGGAAT ATTTATCTTC CTGAGATTTG GAACATGTAC ATGTTTCATT TTTCTTAATT TCGC

>Vigan.10G042200.01
ATGAAGGGAA GTTCAATTGA AGTTGGAGAA GCCATGAAGG GTGCATCCCC AAGAAAAGGG GTGACAAGAG GGTTATCTAT
AATGGACTTT GTTTTGAGAA TTATTGCAGC TGTTGCAACC CTAGGTGCTG CATTGGCCAT GGCAACTACC AATGAGACCC
TTCCATTTGC CACTCAATTC ATCAAATTCA GAGCTCAATT TGATGACCTT CCCTCACTTG TGTTTTTTGT GATGGGCAAC
TCTGTTGTTT GTGGCTATCT TGTGCTTTCA CTTGTTCTAT CTATCTTCCA CATAGTGAGG AGCACTGCAG TGAAAAGTAG
GATTCTCCTT GTTGCTTTTG ACACGGTAAT GTTGGGTCTG ATCACAGCCG CAGCCTCTGC AGCAACATCG ATAGTGTACA
TAGCACACAA TGGAAACACA GGTGCCAATT GGTTTGCAAT CTGCCAACAA TACAACAACT TCTGCGAACG CATTTCGGGT
TCTCTCATTG GCTCTTACAT TGCTGTTGCT CTCTTCACAA TACTAATCAT CCTATCAGTT GTTGCAATCT CTCGAAACTG
A

>Vigan.10G042200.01
MKGSSIEVGE AMKGASPRKG VTRGLSIMDF VLRIIAAVAT LGAALAMATT NETLPFATQF IKFRAQFDDL PSLVFFVMGN
SVVCGYLVLS LVLSIFHIVR STAVKSRILL VAFDTVMLGL ITAAASAATS IVYIAHNGNT GANWFAICQQ YNNFCERISG
SLIGSYIAVA LFTILIILSV VAISRN*