GBrowse Details

Vigan.10G029800.01

Basic Information:
Name: Vigan.10G029800.01
Multiple alignment
Variant Information
Position: Chr10:2851186..2852977 (+ strand)
Length: 1792
Functional Information:
Description: Similar to T25B24.5 protein, putative. [XP_007021827.1, Theobroma cacao]
InterPro: Protein of unknown function DUF1262 (IPR010683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.07,2.56,9.74,14.36,0.19,5.44, 2.63
Automatic updates:
Name: NM_001317551 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100783984 (LOC100783984), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317551 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100783984 (LOC100783984), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:2851186..2851327 (+ strand)
Length: 142
Type: five_prime_UTR
Position: Chr10:2851328..2851647 (+ strand)
Length: 320
Type: CDS
Position: Chr10:2851795..2852668 (+ strand)
Length: 874
Type: CDS
Position: Chr10:2852669..2852977 (+ strand)
Length: 309
Type: three_prime_UTR

>Vigan.10G029800.01 class=Sequence position=Chr10:2851186..2852977 (+ strand)
TCAAAATGAA ACTTCATCTC ATACATATAA ATAAGTAGAT CTGTACATCC TTTAATTTCC ACATTGAACA AGCTGTTCTT
GGAAGGAAGA AAGAAACAGA GAATAATTGA GAAGAGAAGC AAGATTAGAG ATAGAGAAGA GAATGTATGT GACTAGGCCT
TTATCTCTGT TTAAGAAGTC TTCAGATGCT CTGTCATTGC CTCCACCAGA AGGTCCCAAT TCTGGGATTT TGGTGATCCA
AGATGAAGAG ATGGAGCCAA CCTCTTGTTT TGGGTTAGGA GAATTTCATG AGCTGAAGGA GTTGCCTTTC CCTCAAAATT
TAAACCTTGA GTTGTTCTAT AGATCAGGTA TTTCACTCAA TAGAACCACT CATTACCACC ATGTCGCCTT CATCCCAGTT
CCCAACCAGC CTCTGTCTTC CAACAAATAC TATGTCATAA ATCTAAATGG GAAGAAAAGA GGGTAAGCCT AAGCTTTCAT
TTCAATAAGC AAGTTAGATT TTCCTTGATG AGGGTGATTC CATTCTAATG CAAATTTGAG GATTAATCTT CTTGATATGT
CTTATGTTAA GGATTATACT GATGTAATAA TTTGCATTTG GTTGTGCAGG GAAGCGTATA TTAACTCAAA GGAGGAGGAT
TTGGACACAT TCTGTTTCTA CAATGCTGTA ACTGATGTAC CTCTGCATCA AATAGATGTG AATGACACAT ACCAGGAGTT
TGAGATATAT CCTAGGAGAA GTAAAGTTAC TTTCAGGAGT GGTTTTTCAG CTAAATCTGT TGCCCCAGAT GGATACCCTC
CAAGATTTTT GAGCAGAAGG TGGAAAGTGA GTGCTTCAAG TGGTTCAAGT GATTCAAGTC TAAGCGAAGC ATTAGGGGTG
AATGAGGCCC TCCGTGCCAG CAAGCCAGAA TTCAAATTCT CCTTAGGAAA AAAGAGTTCA GACAGCGTTG CTGTGGGAAA
ATGGTACTGC CCCTTCATGT TTATCAAGGA ACGAACTCAC AGAACATTGA AGGAAGAAAT GAGAAAGTCA ATGTTTTATG
AAATGACACT GGAGCAGAAA TGGGAGAAAA TATTTTCATG CAAGAACCAG AATGAAGTGG AAAAGACTGT AGTTGTGAAT
GCTGTGGTTC AAAAGGAAGT GGTTGTAATT GGTGGCTGGG AAGCTGTGAT CGATGAAATG GATATTGCTG AAGGTTTTAG
GTGGTTCCAT AGTTTGAACA ATGTGGGAGA AAAGAGAAGT GTGGGATTGA ACAGTGCAGT GGTTGAGAGA ATGAAGTGGG
AGCAGGAAAG AGCAGGGTGG AATGGAGGAA AAGAGAAGGA AATTAGAGTG AAGAAAGTGG AAGAATTGAA GGGGACTAAT
AAGTGGAAGG AATTTGGTTG TTATGTGTTG GTAGAGACTT TTGTACTAAA AGCATTGGAT GGAACCACAT TACTCACCTA
TTCTTTCAAA CACCATGATG AACTTAGGAG TAAATGGGAA TGAAAACTTC TGTTATTGGT TTCATTTCAA ACAGCATGCC
AAACTCACCC ATATCTGAGT AGAATGACTG CTCTTGTATG CTGTCAATTT TTGTGAGATT TTGTTCACTA AGTTTGTTCA
TTCTTTAGTT TCACTGTAAT CATTTCGATA TTGCTTACAG ATTGTAAGGA TAAACCATAA TATTTTCTCC ATATACTCGA
TCATCTATTG AATCATGTGC TTCCTAGAGT TATATCTATA TTGGACAATG AGCCTCAACC ATATGTACAG TCAAAAACTT
GAAAAACGGA ATACAAGGCG GTTCTTCCTG CA

>Vigan.10G029800.01
TCAAAATGAA ACTTCATCTC ATACATATAA ATAAGTAGAT CTGTACATCC TTTAATTTCC ACATTGAACA AGCTGTTCTT
GGAAGGAAGA AAGAAACAGA GAATAATTGA GAAGAGAAGC AAGATTAGAG ATAGAGAAGA GAATGTATGT GACTAGGCCT
TTATCTCTGT TTAAGAAGTC TTCAGATGCT CTGTCATTGC CTCCACCAGA AGGTCCCAAT TCTGGGATTT TGGTGATCCA
AGATGAAGAG ATGGAGCCAA CCTCTTGTTT TGGGTTAGGA GAATTTCATG AGCTGAAGGA GTTGCCTTTC CCTCAAAATT
TAAACCTTGA GTTGTTCTAT AGATCAGGTA TTTCACTCAA TAGAACCACT CATTACCACC ATGTCGCCTT CATCCCAGTT
CCCAACCAGC CTCTGTCTTC CAACAAATAC TATGTCATAA ATCTAAATGG GAAGAAAAGA GGGGAAGCGT ATATTAACTC
AAAGGAGGAG GATTTGGACA CATTCTGTTT CTACAATGCT GTAACTGATG TACCTCTGCA TCAAATAGAT GTGAATGACA
CATACCAGGA GTTTGAGATA TATCCTAGGA GAAGTAAAGT TACTTTCAGG AGTGGTTTTT CAGCTAAATC TGTTGCCCCA
GATGGATACC CTCCAAGATT TTTGAGCAGA AGGTGGAAAG TGAGTGCTTC AAGTGGTTCA AGTGATTCAA GTCTAAGCGA
AGCATTAGGG GTGAATGAGG CCCTCCGTGC CAGCAAGCCA GAATTCAAAT TCTCCTTAGG AAAAAAGAGT TCAGACAGCG
TTGCTGTGGG AAAATGGTAC TGCCCCTTCA TGTTTATCAA GGAACGAACT CACAGAACAT TGAAGGAAGA AATGAGAAAG
TCAATGTTTT ATGAAATGAC ACTGGAGCAG AAATGGGAGA AAATATTTTC ATGCAAGAAC CAGAATGAAG TGGAAAAGAC
TGTAGTTGTG AATGCTGTGG TTCAAAAGGA AGTGGTTGTA ATTGGTGGCT GGGAAGCTGT GATCGATGAA ATGGATATTG
CTGAAGGTTT TAGGTGGTTC CATAGTTTGA ACAATGTGGG AGAAAAGAGA AGTGTGGGAT TGAACAGTGC AGTGGTTGAG
AGAATGAAGT GGGAGCAGGA AAGAGCAGGG TGGAATGGAG GAAAAGAGAA GGAAATTAGA GTGAAGAAAG TGGAAGAATT
GAAGGGGACT AATAAGTGGA AGGAATTTGG TTGTTATGTG TTGGTAGAGA CTTTTGTACT AAAAGCATTG GATGGAACCA
CATTACTCAC CTATTCTTTC AAACACCATG ATGAACTTAG GAGTAAATGG GAATGAAAAC TTCTGTTATT GGTTTCATTT
CAAACAGCAT GCCAAACTCA CCCATATCTG AGTAGAATGA CTGCTCTTGT ATGCTGTCAA TTTTTGTGAG ATTTTGTTCA
CTAAGTTTGT TCATTCTTTA GTTTCACTGT AATCATTTCG ATATTGCTTA CAGATTGTAA GGATAAACCA TAATATTTTC
TCCATATACT CGATCATCTA TTGAATCATG TGCTTCCTAG AGTTATATCT ATATTGGACA ATGAGCCTCA ACCATATGTA
CAGTCAAAAA CTTGAAAAAC GGAATACAAG GCGGTTCTTC CTGCA

>Vigan.10G029800.01
ATGTATGTGA CTAGGCCTTT ATCTCTGTTT AAGAAGTCTT CAGATGCTCT GTCATTGCCT CCACCAGAAG GTCCCAATTC
TGGGATTTTG GTGATCCAAG ATGAAGAGAT GGAGCCAACC TCTTGTTTTG GGTTAGGAGA ATTTCATGAG CTGAAGGAGT
TGCCTTTCCC TCAAAATTTA AACCTTGAGT TGTTCTATAG ATCAGGTATT TCACTCAATA GAACCACTCA TTACCACCAT
GTCGCCTTCA TCCCAGTTCC CAACCAGCCT CTGTCTTCCA ACAAATACTA TGTCATAAAT CTAAATGGGA AGAAAAGAGG
GGAAGCGTAT ATTAACTCAA AGGAGGAGGA TTTGGACACA TTCTGTTTCT ACAATGCTGT AACTGATGTA CCTCTGCATC
AAATAGATGT GAATGACACA TACCAGGAGT TTGAGATATA TCCTAGGAGA AGTAAAGTTA CTTTCAGGAG TGGTTTTTCA
GCTAAATCTG TTGCCCCAGA TGGATACCCT CCAAGATTTT TGAGCAGAAG GTGGAAAGTG AGTGCTTCAA GTGGTTCAAG
TGATTCAAGT CTAAGCGAAG CATTAGGGGT GAATGAGGCC CTCCGTGCCA GCAAGCCAGA ATTCAAATTC TCCTTAGGAA
AAAAGAGTTC AGACAGCGTT GCTGTGGGAA AATGGTACTG CCCCTTCATG TTTATCAAGG AACGAACTCA CAGAACATTG
AAGGAAGAAA TGAGAAAGTC AATGTTTTAT GAAATGACAC TGGAGCAGAA ATGGGAGAAA ATATTTTCAT GCAAGAACCA
GAATGAAGTG GAAAAGACTG TAGTTGTGAA TGCTGTGGTT CAAAAGGAAG TGGTTGTAAT TGGTGGCTGG GAAGCTGTGA
TCGATGAAAT GGATATTGCT GAAGGTTTTA GGTGGTTCCA TAGTTTGAAC AATGTGGGAG AAAAGAGAAG TGTGGGATTG
AACAGTGCAG TGGTTGAGAG AATGAAGTGG GAGCAGGAAA GAGCAGGGTG GAATGGAGGA AAAGAGAAGG AAATTAGAGT
GAAGAAAGTG GAAGAATTGA AGGGGACTAA TAAGTGGAAG GAATTTGGTT GTTATGTGTT GGTAGAGACT TTTGTACTAA
AAGCATTGGA TGGAACCACA TTACTCACCT ATTCTTTCAA ACACCATGAT GAACTTAGGA GTAAATGGGA ATGA

>Vigan.10G029800.01
MYVTRPLSLF KKSSDALSLP PPEGPNSGIL VIQDEEMEPT SCFGLGEFHE LKELPFPQNL NLELFYRSGI SLNRTTHYHH
VAFIPVPNQP LSSNKYYVIN LNGKKRGEAY INSKEEDLDT FCFYNAVTDV PLHQIDVNDT YQEFEIYPRR SKVTFRSGFS
AKSVAPDGYP PRFLSRRWKV SASSGSSDSS LSEALGVNEA LRASKPEFKF SLGKKSSDSV AVGKWYCPFM FIKERTHRTL
KEEMRKSMFY EMTLEQKWEK IFSCKNQNEV EKTVVVNAVV QKEVVVIGGW EAVIDEMDIA EGFRWFHSLN NVGEKRSVGL
NSAVVERMKW EQERAGWNGG KEKEIRVKKV EELKGTNKWK EFGCYVLVET FVLKALDGTT LLTYSFKHHD ELRSKWE*