GBrowse Details

Vigan.09G232900.01

Basic Information:
Name: Vigan.09G232900.01
Multiple alignment
Variant Information
Position: Chr09:37160864..37164995 (+ strand)
Length: 4132
Functional Information:
Description: Similar to 26S protease regulatory subunit 8 homolog A-like. [XP_004504777.1, Cicer arietinum]
GO: Biological Process: protein catabolic process (GO:0030163)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro: AAA+ ATPase domain (IPR003593)
ATPase, AAA-type, core (IPR003959)
ATPase, AAA-type, conserved site (IPR003960)
26S proteasome subunit P45 (IPR005937)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:633.81,295.44,100.12,77.65,127.64,155.96,92.06,79.09
Arabidopsis thaliana homolog: AT5G19990.1, AT5G20000.1
Automatic updates:
Name: NM_001254623 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S protease regulatory subunit 8 homolog A-like (LOC100812783), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:37160864..37161041 (+ strand)
Length: 178
Type: five_prime_UTR
Position: Chr09:37161042..37161237 (+ strand)
Length: 196
Type: CDS
Position: Chr09:37161329..37161426 (+ strand)
Length: 98
Type: CDS
Position: Chr09:37161851..37162075 (+ strand)
Length: 225
Type: CDS
Position: Chr09:37162288..37162350 (+ strand)
Length: 63
Type: CDS
Position: Chr09:37162452..37162615 (+ strand)
Length: 164
Type: CDS
Position: Chr09:37163200..37163356 (+ strand)
Length: 157
Type: CDS
Position: Chr09:37163551..37163649 (+ strand)
Length: 99
Type: CDS
Position: Chr09:37163762..37163872 (+ strand)
Length: 111
Type: CDS
Position: Chr09:37164560..37164700 (+ strand)
Length: 141
Type: CDS
Position: Chr09:37164701..37164995 (+ strand)
Length: 295
Type: three_prime_UTR

>Vigan.09G232900.01 class=Sequence position=Chr09:37160864..37164995 (+ strand)
AGGCAAGTAG CAGTACTTGA ACCGGTTTGT TTTTGGTATT TTCTTTGTAC AGACCGACAT AAGCCGGGAA GAGAGAAGAG
AAGAGAAGAG AAGAAGAGAG AGGATCGGGA AGGTGGTGGT TTGGGTTTTG CTCTGATTTT CATCGCCGAA AGGCAGAGAG
AGATCTATCT TTGTATCTAT GGCTCTTGCG GGAGTTGAAG TGAAGCATGT GGAGGGTGTG CCGGAGGAGA ATTGCTCCGC
CAAGCCCACC AAGCAGGGCG AGGGTCTCCG CCACTACTAT TCTCTCAACA TCCACGAGCA TCAGCTCCTT CTCCGTCAAA
AGACGCATAA CCTCAACCGT CTTGAGGCTC AGCGTAACGA GCTCAATTCC AGGGGTCCGC TAACCCTAAC CCTAGCCCTA
CTTTATTCTT TCGGTTTCCC TTATCTAATT CTATTCATCT TTCTTTTTCA TTTCAATTCC GGCAGTGAGG ATGCTACGCG
AAGAGTTGCA GCTTCTTCAG GAGCCTGGCT CCTATGTTGG TGAAGTTGTC AAAGTGATGG GCAAGAACAA AGTCCTTGTC
AAGGTCACAT CCTCATTTCT CTCTTTTCTT TCATTTTTGG TCATCTTTCT TTAGCACTCT CCAATTATAT TTATAAATAT
GAATCTCCTT TTGGTGTATG AGTGTACACT TAAATACTAT TTTGCTAATT CTTTTATAGA TCTATGTTTA TATTTATGAT
CTCCTGCTTT TCAACTCTAC AACATTTGCG TTTGCTTGGT TGCAAACTTT TTCCATCCTC AAGTATCACT GACTGTTGTT
GGATTATTTA AAGCAATGTT TAGTTCTGAA AAGATGTATC AAACGACACT GCATCATTTA TTTTCATCTG TTAGTCACAA
ACGTTTGACT TCATCGGATG GTTGGGTCTG CATGTTTATT TGTGAAATTA GTAAAATGCA GGATCAGAAC CAAGATAAAG
TGCTGATTTT CCTTTACTTT TTCTCAGGTC CACCCAGAAG GAAAATATGT TGTCGACATT GACAAAAATA TTGACATTAC
AAAGATCACT CCATCCACTA GAGTTGCACT TCGCAATGAT AGCTATGTTC TTCATTTAGT TCTGCCCAGT AAAGTTGATC
CGTTGGTCAA TCTGATGAAA GTTGAGAAAG TTCCTGATTC TACGTATGAC ATGATTGGTG GTTTAGACCA GCAAATCAAA
GAAATCAAGG AGGTACACTG CATAGAGCTT TTCAATTTTA TTAGCATTTA ATGTTCAAAA TCTCTCACGG GTAGGACCTG
ATGTTTCTAT CAATCCATCT GTGTTTGTCC ATGCATCACT TGTGTTATTT TCTGTATGGA CATATTTTTC TGCGTATATA
TACATTATAC ATTAGAAAAG ATCAGTAATT TTTTTGGGCC TCATATACGT GGTTAACTAT GTAGGTTATC GAGCTACCAA
TTAAGCATCC TGAGCTCTTT GAGAGTCTTG GAATTGCACA ACCAAAGGTA GTCCCTCAAT TTGTAGTTGA TGTTAAATTC
TATGTCATTC AATCAGCAAA CTTTGGATGT TAATTTTCTA TTTGCTGAAT CTCTTGAACA CATCAAAGGG TGTCCTGCTG
TATGGGCCAC CTGGTACAGG TAAAACGTTG TTGGCTAGGG CAGTGGCGCA TCATACTGAC TGTACGTTCA TAAGGGTGTC
TGGTTCTGAA TTGGTTCAGA AGTACATTGG AGAAGGTTCT AGAATGGTCA GGGAACTTTT CGTTATGGCC AGGTTTGTAC
TCATTGTTTA GGTTCCTTTG TTCTTCTTAT CTGTTTATAC CAAAGTAAAA AGGATAAAAA CAAGAGAAAT GCTAGCAATA
GACTCTCTCG TTCTAATTGA TTGAAAACCG CAAAAAAAAA AATAATTGTG GGGTTTCCCA ATCATTTGAT GAGCCTCTCT
TTGTTATGTA GCTTTCAATA AACTTTAACT AATGCGGTAG TGTGTGTTTC TAGCATTCTT CTAAATATGA AGTCTCATTG
GCTTTATGAC TGTTAGTTGG GGATAGTTTT AAGAGGGGAT GGGTTAACTT GACCCAGAGC AAAGATTGAA GCATAGTATC
TTAGGTTTTG ATTGTCAAAT TTGGTCTTAG ATGCATACAA TGTATCAGGT GCTGATGGGA TTCGGTGTGA GTATTGTCTT
TTTTACAATT TCCACTAATA AGTGCATTTG TAAAGGGAAG GAAGGACATT TTTATTCTCC TTAAGAAGTT ATGATTAACA
CATTTTATTC ATAAACTTTC AATTTTGTTA TTTGCTGACT TGCCTAATCA GTTTTCATAT GTAAATATTA TTATGCAACT
CTTGTCTTCT TGACAGGGAA CATGCTCCAT CAATTATCTT CATGGACGAA ATCGACAGCA TTGGATCTGC TCGGATGGAA
TCTGGAAGTG GCAATGGTGA TAGTGAGGTA CAGCGTACTA TGCTGGAACT TCTCAACCAG TTGGATGGAT TTGAAGCTTC
AAATAAGATC AAGGTAAAGG GAGTTGTATC TGTTATACTG TACTATTAAG GGAAAATGGG GGATTTTAAA ACTAGTCTGA
TGTCCACTGT TATAAATAGA AACTTGAACC AGTTGAACAT TTCAAATATT ATTTACTGTA TGTAGTGCAT TTGAGATAAC
TTCACAATTC TTTGTGGAGG TTCTGAAGAT AATTTTTCAA ATTGTAGGTT TTGATGGCAA CAAATAGGAT TGATATCTTG
GATCAAGCTC TCCTTAGACC TGGACGGATT GATAGGAAGA TTGAATTTCC TAACCCTAAT GAAGAGGTGT TCCTTTTTTC
CTACATCTTA CTTGTTAATA TATTTGTAAT GGGATAAAAG GTGCACCTGG TGCATTCATA ACTAATATTC CTGAAAATAA
CTGTATTTGT TTATGCAGTC TCGGCTGGAT ATTTTGAAAA TCCATTCAAG GAGAATGAAT TTAATGCGTG GCATTGATTT
AAAGAAGATT GCTGAGAAGA TGAATGGAGC ATCTGGTGCT GAACTTAAGG TATTTTGTTC ATTTGCATTT TTCCCCATCT
GCTATATGTC CTTCTTGAAG CAATTTGTGA TGGTGTTGCT GATCTCGTAT ATTTATTGCT CAAGAGTTAG AATAAATAAA
ATGTGAGTTC GTTTGTGCCT AGATACCGTG AAAATGGTCA AAATGTTAGA AACGACTTTG ATCAAATGGA ATACATTAAA
AATAGTGGTC CATTATCACA TGAGAGTGTT TATTGCAGAA TATTGAGCCA CCAAGACAGA CGATACAGAA TGAGTATGGT
ATGCTTAGTG GACGTATGAA TACAGGGAAA CAGTAGCAAG AATAAACCAC TGTTTTGTGA TTGGGAGATT TTATAATGGG
TTAGTAACAA GTTGAGATAT TTGACATCGA TTAGCATTAC ACAGGATGCT GAGCCTTGTA TATAATAGTG AGATTTTATT
ACGATTTGAC AAGAGAACCC ATTATAATAT CCAAAAAAAT CAGCAATGCT GCTAGAATTG ATGAGGAAAT AAAACAAGTA
AGCCCGAATG TAGTGTTTTT GTTACAGAAT GTGAAACGAA ATCGGTCATA CATCATAATG AATTTAAGTA TTTATAATAA
CGCAAGCGCA GAACAATTTA GTTTGTCAGT GTTTAAATCA ATGAATTATT TCAGTATCTG AGCCTGACTA ATACTCAAAT
TATGTCTCGT ATTCAGGCTG TATGCACTGA AGCCGGTATG TTTGCTTTGA GGGAGAGGAG GGTACACGTG ACTCAGGAGG
ATTTTGAGAT GGCTGTGGCC AAGGTGATGA AAAAGGAGAC TGAAAAAAAT ATGTCATTGC GGAAGTTGTG GAAGTGATTT
TTATTTTATG TTTCTGGTGC ACTTATCTTG TTAAGTCGGA CAACAAAATC ACCTTAGGGT TTCAATTTAC GGTGGCATTG
GTTTTTTCCT TTTGATTTAA GTTTACCATG TTATGTACCA AATGATTCTT TCCAGTTGAG TTTCTTCATT CTGTGTCTTC
GTACTGCACA CAACATTTAT AGAGTATTTT ACAAAAATTC TCATTAAAGA CCACTATGTA GTCTAAACCA GTGAAAATAA
CTGATATATT AATAAATTTG GTAATGAAGA TGATATAATA TTAAGTTTTA TA

>Vigan.09G232900.01
AGGCAAGTAG CAGTACTTGA ACCGGTTTGT TTTTGGTATT TTCTTTGTAC AGACCGACAT AAGCCGGGAA GAGAGAAGAG
AAGAGAAGAG AAGAAGAGAG AGGATCGGGA AGGTGGTGGT TTGGGTTTTG CTCTGATTTT CATCGCCGAA AGGCAGAGAG
AGATCTATCT TTGTATCTAT GGCTCTTGCG GGAGTTGAAG TGAAGCATGT GGAGGGTGTG CCGGAGGAGA ATTGCTCCGC
CAAGCCCACC AAGCAGGGCG AGGGTCTCCG CCACTACTAT TCTCTCAACA TCCACGAGCA TCAGCTCCTT CTCCGTCAAA
AGACGCATAA CCTCAACCGT CTTGAGGCTC AGCGTAACGA GCTCAATTCC AGGGTGAGGA TGCTACGCGA AGAGTTGCAG
CTTCTTCAGG AGCCTGGCTC CTATGTTGGT GAAGTTGTCA AAGTGATGGG CAAGAACAAA GTCCTTGTCA AGGTCCACCC
AGAAGGAAAA TATGTTGTCG ACATTGACAA AAATATTGAC ATTACAAAGA TCACTCCATC CACTAGAGTT GCACTTCGCA
ATGATAGCTA TGTTCTTCAT TTAGTTCTGC CCAGTAAAGT TGATCCGTTG GTCAATCTGA TGAAAGTTGA GAAAGTTCCT
GATTCTACGT ATGACATGAT TGGTGGTTTA GACCAGCAAA TCAAAGAAAT CAAGGAGGTT ATCGAGCTAC CAATTAAGCA
TCCTGAGCTC TTTGAGAGTC TTGGAATTGC ACAACCAAAG GGTGTCCTGC TGTATGGGCC ACCTGGTACA GGTAAAACGT
TGTTGGCTAG GGCAGTGGCG CATCATACTG ACTGTACGTT CATAAGGGTG TCTGGTTCTG AATTGGTTCA GAAGTACATT
GGAGAAGGTT CTAGAATGGT CAGGGAACTT TTCGTTATGG CCAGGGAACA TGCTCCATCA ATTATCTTCA TGGACGAAAT
CGACAGCATT GGATCTGCTC GGATGGAATC TGGAAGTGGC AATGGTGATA GTGAGGTACA GCGTACTATG CTGGAACTTC
TCAACCAGTT GGATGGATTT GAAGCTTCAA ATAAGATCAA GGTTTTGATG GCAACAAATA GGATTGATAT CTTGGATCAA
GCTCTCCTTA GACCTGGACG GATTGATAGG AAGATTGAAT TTCCTAACCC TAATGAAGAG TCTCGGCTGG ATATTTTGAA
AATCCATTCA AGGAGAATGA ATTTAATGCG TGGCATTGAT TTAAAGAAGA TTGCTGAGAA GATGAATGGA GCATCTGGTG
CTGAACTTAA GGCTGTATGC ACTGAAGCCG GTATGTTTGC TTTGAGGGAG AGGAGGGTAC ACGTGACTCA GGAGGATTTT
GAGATGGCTG TGGCCAAGGT GATGAAAAAG GAGACTGAAA AAAATATGTC ATTGCGGAAG TTGTGGAAGT GATTTTTATT
TTATGTTTCT GGTGCACTTA TCTTGTTAAG TCGGACAACA AAATCACCTT AGGGTTTCAA TTTACGGTGG CATTGGTTTT
TTCCTTTTGA TTTAAGTTTA CCATGTTATG TACCAAATGA TTCTTTCCAG TTGAGTTTCT TCATTCTGTG TCTTCGTACT
GCACACAACA TTTATAGAGT ATTTTACAAA AATTCTCATT AAAGACCACT ATGTAGTCTA AACCAGTGAA AATAACTGAT
ATATTAATAA ATTTGGTAAT GAAGATGATA TAATATTAAG TTTTATA

>Vigan.09G232900.01
ATGGCTCTTG CGGGAGTTGA AGTGAAGCAT GTGGAGGGTG TGCCGGAGGA GAATTGCTCC GCCAAGCCCA CCAAGCAGGG
CGAGGGTCTC CGCCACTACT ATTCTCTCAA CATCCACGAG CATCAGCTCC TTCTCCGTCA AAAGACGCAT AACCTCAACC
GTCTTGAGGC TCAGCGTAAC GAGCTCAATT CCAGGGTGAG GATGCTACGC GAAGAGTTGC AGCTTCTTCA GGAGCCTGGC
TCCTATGTTG GTGAAGTTGT CAAAGTGATG GGCAAGAACA AAGTCCTTGT CAAGGTCCAC CCAGAAGGAA AATATGTTGT
CGACATTGAC AAAAATATTG ACATTACAAA GATCACTCCA TCCACTAGAG TTGCACTTCG CAATGATAGC TATGTTCTTC
ATTTAGTTCT GCCCAGTAAA GTTGATCCGT TGGTCAATCT GATGAAAGTT GAGAAAGTTC CTGATTCTAC GTATGACATG
ATTGGTGGTT TAGACCAGCA AATCAAAGAA ATCAAGGAGG TTATCGAGCT ACCAATTAAG CATCCTGAGC TCTTTGAGAG
TCTTGGAATT GCACAACCAA AGGGTGTCCT GCTGTATGGG CCACCTGGTA CAGGTAAAAC GTTGTTGGCT AGGGCAGTGG
CGCATCATAC TGACTGTACG TTCATAAGGG TGTCTGGTTC TGAATTGGTT CAGAAGTACA TTGGAGAAGG TTCTAGAATG
GTCAGGGAAC TTTTCGTTAT GGCCAGGGAA CATGCTCCAT CAATTATCTT CATGGACGAA ATCGACAGCA TTGGATCTGC
TCGGATGGAA TCTGGAAGTG GCAATGGTGA TAGTGAGGTA CAGCGTACTA TGCTGGAACT TCTCAACCAG TTGGATGGAT
TTGAAGCTTC AAATAAGATC AAGGTTTTGA TGGCAACAAA TAGGATTGAT ATCTTGGATC AAGCTCTCCT TAGACCTGGA
CGGATTGATA GGAAGATTGA ATTTCCTAAC CCTAATGAAG AGTCTCGGCT GGATATTTTG AAAATCCATT CAAGGAGAAT
GAATTTAATG CGTGGCATTG ATTTAAAGAA GATTGCTGAG AAGATGAATG GAGCATCTGG TGCTGAACTT AAGGCTGTAT
GCACTGAAGC CGGTATGTTT GCTTTGAGGG AGAGGAGGGT ACACGTGACT CAGGAGGATT TTGAGATGGC TGTGGCCAAG
GTGATGAAAA AGGAGACTGA AAAAAATATG TCATTGCGGA AGTTGTGGAA GTGA

>Vigan.09G232900.01
MALAGVEVKH VEGVPEENCS AKPTKQGEGL RHYYSLNIHE HQLLLRQKTH NLNRLEAQRN ELNSRVRMLR EELQLLQEPG
SYVGEVVKVM GKNKVLVKVH PEGKYVVDID KNIDITKITP STRVALRNDS YVLHLVLPSK VDPLVNLMKV EKVPDSTYDM
IGGLDQQIKE IKEVIELPIK HPELFESLGI AQPKGVLLYG PPGTGKTLLA RAVAHHTDCT FIRVSGSELV QKYIGEGSRM
VRELFVMARE HAPSIIFMDE IDSIGSARME SGSGNGDSEV QRTMLELLNQ LDGFEASNKI KVLMATNRID ILDQALLRPG
RIDRKIEFPN PNEESRLDIL KIHSRRMNLM RGIDLKKIAE KMNGASGAEL KAVCTEAGMF ALRERRVHVT QEDFEMAVAK
VMKKETEKNM SLRKLWK*