GBrowse Details

Vigan.09G219700.01

Basic Information:
Name: Vigan.09G219700.01
Multiple alignment
Variant Information
Position: Chr09:36309607..36312996 (+ strand)
Length: 3390
Functional Information:
Description: Similar to Auxin-induced protein 22A. [P32293, Vigna radiata var. radiata]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: AUX/IAA protein (IPR003311)
Aux/IAA-ARF-dimerisation (IPR011525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,3.60,9.73,4.87,1.03,11.05,1.29, 40.59
Arabidopsis thaliana homolog: AT3G15540.1
Automatic updates:
Name: BT094830 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-14F6 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36309607..36309764 (+ strand)
Length: 158
Type: five_prime_UTR
Position: Chr09:36309765..36310140 (+ strand)
Length: 376
Type: CDS
Position: Chr09:36311122..36311215 (+ strand)
Length: 94
Type: CDS
Position: Chr09:36312651..36312765 (+ strand)
Length: 115
Type: CDS
Position: Chr09:36312766..36312996 (+ strand)
Length: 231
Type: three_prime_UTR

>Vigan.09G219700.01 class=Sequence position=Chr09:36309607..36312996 (+ strand)
TTCACTTTCT ATATATACAC ATTCTAACTA AACCTTTTCT CCCATATTCC AAAAACCATT CACACATACA TAACCCTTCA
CTGTATCAAA TTATACACTA ATATTCTCAT TCCACCCTGA GAGAAACTAA TCATCCTTAT CATACTTTGT ACCCTAATAT
GGCCAAAGAA GGTCTTGGAC TTGAAATCAC CGAGCTGAGA TTGGGTCTAC CCGATGCTGA CCATGTGAGT GTGGCTAACA
AGAACCGTGA AAAGAAGAAT AAGAGGGTGT TCTCGGAGAT TGATGATGTT GGAGATGAAA ACAGCTCCTC CGGCGGCGGT
GGTGACCGGA AAATGGAGAA CAAGAATCAA GTGGTGGGGT GGCCTCCGGT GTGCTCCTAC AGGAAGAAGA ACAGTGTGAA
CGAAGCTTCA AAAATGTACG TTAAGGTTAG CATGGATGGT GCTCCTTTCT TGCGTAAAAT GGATCTGGGT ATGCACAAAG
GATACTCCGA TTTAGCCTTC GCTTTGGAGA AGCTCTTTGG TTGCTATGGA ATAGGTCAGT TTCTCTTGCA CACCATATTT
CAATCTTTTC TTCATATTTT TTCCTATATA TATATCAAGG TTCAAACCAT AGGAATAACA CATGATATAG ACCAAAACGG
AAATATTAAC ACACCAGTCT TTTGAACTTT GTCTAAAAGC ATAAAACTGT GTACAATGCT GTAGGAAAAC ATCATAAAAC
CTAACACACG ATTATGAAAA TTTTACTGAC AAAGAAAGAG TGTCGTAGTT TTCATTGAAC TTCACTTTCT GCAAAAAAAT
AAAAAATAAC TCATTGAATT GTATATACTG CTTTAAATGT TGGTGTTCTA ATTTTTAAGA GAAGATGAAT TCAGATCCCA
ATCACCCCTT CTCCAAAGAA ACAAGCTTTT TTTATATCCC ATCATGAAAA GGTTTTCCAT GCTGAAACAT AGAAAAAAAA
GACTCACTAT TAAACTAATG AACTTTTTAA AAGTCCCCAA CATAACATAT CCTTAGAGTT TCTTTGTTGA TCTTGATGTT
TGAACATGGC ATCGATCTTG ATCTTCTGCA AGTACTATTT GTCACTACCA ACATGTAATA GATGAGATAG GTTTAACTGG
CAGCAGCATA GGATCTTGGT GAATCTAATG ATAATTAGAT TATGCTTATT TTGAAAATTA AACAACTTAA TTAAGCAGTG
AATATTATGG TGTACAACGT AAGGATTATG AGGAATCTTT TAGTTTAATA ATTGTCCTAG AAAGAATGGG CAAGAGTAAA
ATAATTTGGA ACAAAGAGAC AGAAGGACAA AGTGGGAGAC CAAGCAGTGT ATAATAATTA GACATTCTGC CTTATTATGT
GATGGCGTGC AGCTAGTGTA TACATAAAGT TGAACTGATC TTTTCATGTA ACAAAAATTG ATCAAGAAGA ATAAACTTAA
TATGTATAAA TTAATCATGA TTAGCACTCA ATTAGCAAAA AAAATTAATA TTTATTTACT GGAATGTGTT GACAGTGGAA
GCATTGAAGA ATGCGGAGAA TGGTGAACAC GTTCCCATTT ACGAGGACAA AGATGGCGAC TGGATGCTTG TTGGAGATGT
CCCATGGGAG TAAGTACTTT TGGCCTTTAC CCACCTTTTA TTTTATCATT TTTATATGTT TTTTTCAGAG AAAAATTATT
TTTTTTAAGT TGATTGAATT TTTATGTGTT GATTTTGAAT AAAAATGGTA TGATCAGATC TAACAAATAT ATATATGTAT
GATTTCACTG AATACAACTT TTTAATCAAA CGTAGGTTAA GTTAAAGAAC ACATAACAAC TGTGTTACTC ATGTTTCGCT
CAAAGCATAA ATTTAAAGTG AGAAAGGTTC ATTATAGAAC TGATTTCAAG AATTATACTA TGGAGGATTT ACTGTAGTTT
TGGTTTTCTG TGTGCTAAAA CATCTATGTA TTATGTTTTA TGAGAAAAAA GTGAGAAGAA AAATGATTCG TGTACATAAA
AAAGGTTCAA CAACATGTAA TGGTATAACA TACTATTGAA GTAAACCAGA AGAAAAACCA GAAATACTTT TATACACTGT
CATGGAGTCA GCTTTTGCGT GTTTTCTGAG CCAACCATCA TTCGATCTTT GAAAATTATG CATGCTAAGG AAATTTCGTT
TATCAATATA CTGTGAATAA ATCTGAGATC TAATTACCAG AGATATATAC ATGCAATATA AATGGTGTAC AATCCAAATG
AATTCAAACT ACTGTGTAAG TTGTCCCACA GACAGATTTA AACAATACAG AAAACCAAGT TGCCCCAGAA GATTGAAACA
TAAGCTTGTG AAATTCGTTT AATCAAGGTG TTGTAGGAGC TATTAAAATT GAAAACTCCA CATGAACAAG TTGTAATTTT
CGGTGAGACC AGCATTTCGT AAAAGTTAAT GTAGGAAAGT GAAAAATTCG ACAATTTTAT TTTGCTGTGA TATTGATGAT
GTATGTTGGA CCCCATGTAG CCGACATGCG TGAATCCCCT CCTTATAATG TTGAGCATCA AATTAGGAAG GGGAAAAGAT
GTGACCTACC TCAAAAGAGC AAAGCCATTA TTGCTATGGG ATACATCAAA ATAAAGGGTA GGAAAAAAAA AAGGGTTCTT
GGTTTGCAAC ATTTCCAAGA ATGATCTAAA TGTCTCGTGA TGACGGTGAT AACAATTAAG ATGTTAACTT TAAATATAAT
AGAATTACAC GTTAACGAGT GATTCGATAA CATCTTATAA CAAGTTAATT ATATATTAAC AAACAGAAAT ATCGTTAAAA
TAGATTTTAA ACTATGATTA TTTAATATCA TGTTAAAAAC TGAATTTTAA GTCTAATTCA ATCTTATAAA ATTCGTTTAT
AAGATAAAAT TTGTAGTTAA ATATACTGTG AATTAGTTTT ATCTCTAGTC GATTTATAAC TTTCAAAAAT GACATGATTT
TAATTACATC TAAAAACTAT ACATAATAAT GTTGTGTTTT GTGATGAAAC ACTTATGTAT GTATTGATGA TGAAACTTGA
ACAGAATGTT CATGGAGTCT TGCAAGAGGT TGAGGATTAT GAAGAGAGCA GATGCAAAGG GGTTCGGTTT GCAACCAAAA
GGATCCTTAA AGGGATTCAT AGAAAGCGTG GGAAAGTGAA AGACACGTTA GGGTTCTAAT TAATGCACTT TTGATGATGA
TCGATGATGA TGAATCCAAA TTTATGTTAT GGTTTTCTTA TATTAATTTG AGAAAGCATA TCTTTTTAGT TTGATATATG
AATCAAACTT TTGTTTATGT TAAAGTGTTA ATGGATGACA TATAGGACCC TATATAATCA ATAGGGAAAA CTTATCTTTT
TTTTAGATTA ATGATTTCTC TTGTTTCTTC 

>Vigan.09G219700.01
TTCACTTTCT ATATATACAC ATTCTAACTA AACCTTTTCT CCCATATTCC AAAAACCATT CACACATACA TAACCCTTCA
CTGTATCAAA TTATACACTA ATATTCTCAT TCCACCCTGA GAGAAACTAA TCATCCTTAT CATACTTTGT ACCCTAATAT
GGCCAAAGAA GGTCTTGGAC TTGAAATCAC CGAGCTGAGA TTGGGTCTAC CCGATGCTGA CCATGTGAGT GTGGCTAACA
AGAACCGTGA AAAGAAGAAT AAGAGGGTGT TCTCGGAGAT TGATGATGTT GGAGATGAAA ACAGCTCCTC CGGCGGCGGT
GGTGACCGGA AAATGGAGAA CAAGAATCAA GTGGTGGGGT GGCCTCCGGT GTGCTCCTAC AGGAAGAAGA ACAGTGTGAA
CGAAGCTTCA AAAATGTACG TTAAGGTTAG CATGGATGGT GCTCCTTTCT TGCGTAAAAT GGATCTGGGT ATGCACAAAG
GATACTCCGA TTTAGCCTTC GCTTTGGAGA AGCTCTTTGG TTGCTATGGA ATAGTGGAAG CATTGAAGAA TGCGGAGAAT
GGTGAACACG TTCCCATTTA CGAGGACAAA GATGGCGACT GGATGCTTGT TGGAGATGTC CCATGGGAAA TGTTCATGGA
GTCTTGCAAG AGGTTGAGGA TTATGAAGAG AGCAGATGCA AAGGGGTTCG GTTTGCAACC AAAAGGATCC TTAAAGGGAT
TCATAGAAAG CGTGGGAAAG TGAAAGACAC GTTAGGGTTC TAATTAATGC ACTTTTGATG ATGATCGATG ATGATGAATC
CAAATTTATG TTATGGTTTT CTTATATTAA TTTGAGAAAG CATATCTTTT TAGTTTGATA TATGAATCAA ACTTTTGTTT
ATGTTAAAGT GTTAATGGAT GACATATAGG ACCCTATATA ATCAATAGGG AAAACTTATC TTTTTTTTAG ATTAATGATT
TCTCTTGTTT CTTC

>Vigan.09G219700.01
ATGGCCAAAG AAGGTCTTGG ACTTGAAATC ACCGAGCTGA GATTGGGTCT ACCCGATGCT GACCATGTGA GTGTGGCTAA
CAAGAACCGT GAAAAGAAGA ATAAGAGGGT GTTCTCGGAG ATTGATGATG TTGGAGATGA AAACAGCTCC TCCGGCGGCG
GTGGTGACCG GAAAATGGAG AACAAGAATC AAGTGGTGGG GTGGCCTCCG GTGTGCTCCT ACAGGAAGAA GAACAGTGTG
AACGAAGCTT CAAAAATGTA CGTTAAGGTT AGCATGGATG GTGCTCCTTT CTTGCGTAAA ATGGATCTGG GTATGCACAA
AGGATACTCC GATTTAGCCT TCGCTTTGGA GAAGCTCTTT GGTTGCTATG GAATAGTGGA AGCATTGAAG AATGCGGAGA
ATGGTGAACA CGTTCCCATT TACGAGGACA AAGATGGCGA CTGGATGCTT GTTGGAGATG TCCCATGGGA AATGTTCATG
GAGTCTTGCA AGAGGTTGAG GATTATGAAG AGAGCAGATG CAAAGGGGTT CGGTTTGCAA CCAAAAGGAT CCTTAAAGGG
ATTCATAGAA AGCGTGGGAA AGTGA

>Vigan.09G219700.01
MAKEGLGLEI TELRLGLPDA DHVSVANKNR EKKNKRVFSE IDDVGDENSS SGGGGDRKME NKNQVVGWPP VCSYRKKNSV
NEASKMYVKV SMDGAPFLRK MDLGMHKGYS DLAFALEKLF GCYGIVEALK NAENGEHVPI YEDKDGDWML VGDVPWEMFM
ESCKRLRIMK RADAKGFGLQ PKGSLKGFIE SVGK*