GBrowse Details

Vigan.09G164400.01

Basic Information:
Name: Vigan.09G164400.01
Multiple alignment
Variant Information
Position: Chr09:30579620..30582210 (+ strand)
Length: 2591
Functional Information:
Description: Similar to Uncharacterized protein. [I1MKN8, Glycine max]
InterPro: Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain (IPR025564)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:215.51,109.71,150.31,1241.00,18.47,1 77.05,50.91,183.43
Arabidopsis thaliana homolog: AT4G01150.1
Automatic updates:
Name: NM_001250437 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305578 (LOC100305578), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250437 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CAAD domain-containing protein (LOC100305578), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:30579620..30579785 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr09:30579786..30579939 (+ strand)
Length: 154
Type: CDS
Position: Chr09:30580929..30581023 (+ strand)
Length: 95
Type: CDS
Position: Chr09:30581198..30581305 (+ strand)
Length: 108
Type: CDS
Position: Chr09:30581440..30581511 (+ strand)
Length: 72
Type: CDS
Position: Chr09:30581811..30581876 (+ strand)
Length: 66
Type: CDS
Position: Chr09:30581877..30582210 (+ strand)
Length: 334
Type: three_prime_UTR

>Vigan.09G164400.01 class=Sequence position=Chr09:30579620..30582210 (+ strand)
ACATGTTCTT CTCTACTTTC TTTATTTTTT TTTATAAAAA TAAATATCTA TTGAATTTGA ATAGGAAGAA AGTGAGACCA
ACCAAAGTGC CAATTTCTTG GTTTGGGGAT AGATAGAGTG ATACCCATCA CACTGTTCAT ATTTCTCATA TTAATTAATA
ATAATAATGG CAGCGGCGGC GGCGGCAGTG ACGGTGCTAC TACCACCTAG GATTCCGACC ACCACCAACG TTACCCGCTG
TTCTGCTTTG CCTTCTCTGC CTCCACGTGT AACCAGCACC AGCACCACCT TGTTCTCACC TTCCCTCAAC CACTTTTCAG
GTTCGCTTTT CCTCTTTTTT CCTTGTTCGT CTCAAAACGT TGAATCTTTA GGAATATTGC GTTTTTCTAG TAAGTTGTTT
TTAAAATTTG TGACAAAGAA AAAGAAAAAA GAAAAAAGCG GTCTTTCTTT TTACAATTGA GATGCATTTG CTTGTTCTCT
CGTTTTCCAT TTGGTATGCC ATTCTCCTTG TTAGTCTTAA TTTTGAAATC TTGTTTCTTC ATAAAAAGGT GTAAAATTTG
GTGGCTCCAA ACAATTGGGT TGAAATTTTT TAATTGGATT GATTTGATTT ACTAATGGGG TTAGACTTTA GTGAAGTGAC
GAACCACGTT CAAATTCCTT CTGGGTGATG CCAATGTTTA GTTTCCGACA GTCGAATAGC AGGAAATGGA AGAGGAAAAA
GGGTTTCATT TACATAAACT CTTGAAGTAT GCTGCATTAT TATTGTCATG TATAGTATGT TTGTATTTTT TACATTGTTA
TATTTTTAAT TTTGGGCCTG TCAGCGCTAT TAAGCTGTTG TCCAATTCTT TTATCTTGTC CTCTCCTGAA ATAATTTATC
TCACTTCCTC TTTTATGTGT TTTAATCTTT AATCTAGTTT GAAATTATTC CATGTTTTGA TCATCCCTGT CCTAGGTGAT
GTTCATTATG TAACGGAAAC ACTTCTGCAT TTTGAAATTG ATGAGTAGTA AACATCTTGT ATTGAGTGGT TACACTTTGC
CAAATCAAAG TCTAATCAGA AAGTTAATTT AGTTTCTGCA ATGTGAATGG GGCAATTCAT GCCACCATCA ATCAATACTT
GTCCAAGACT TTACACATGG TTACTTGGTT AAGCCTTCTG TGTTTGTAGT TTTAGCGACA GCTCCTCCCT AGCTTTAGGA
CTAGTAATTC TTCTGTTGCA TATTCAATAT TCATGTTATT TCTTCACATC TCTTTCTTGT TCATTTATCT TATAATAATT
CTAAGGTGAT GTTTCTTTTC CTTTTTCAGT GTCCCGAAAA TCTTTTCTGC TTCAGACCAG AGCTTCTTCA GAGGAATCAT
CCTCAGTAGA TGCCAATGAG TTGTTCACAG ATTTGAAGGA AAAGGCAAGA AGTTTACTAC TTGGCTGATT TCAGCAATTT
GGTTTTGTCC TGAACTTCCT TTTAACAAAT CCACAAGCAT GCGCTTTCTC CTCCTTGCCA ACCCTTATTT TACACAATGT
TTGGTACAAA CTCATTTTTA ACCAAGTGGA AATAATATCC TCCGTTTATC ATAATCAGTG GGATGCTGTT GAAAACAAGT
CCACAGTGCT TATCTATGGT GGTGGGGCTT TAGTTGCTGT TTGGCTATCT TCCATTCTCG TGAGCGCAAT CAACTCAGTT
CCCTTGGTAA GCCTTCACTC TTTATGAATA TAATTCACTT TTACCTTATT GTATCATCAC TTCTGGTTAT ATATTTCTGA
TTACATCATC TATATAAAAC CTTGGTGAAC CATTCTGGAA TAATACCATT TATGTTTCAG CTTCCAAAGA TCATGGAGTT
GGTAGGTCTA GGATACACTG GATGGTTTGT CTACCGATAC CTTCTGTTCA AGGTAAGTAA CACACATCAT GAATACTTCA
CTCTTTTAGA TTTTACAATG TAAGATGTTT TGTTTTACCA CGCCCTGAGG AATTTGGATT CTCTGCTGAG TTTTTGGTGC
TGGTGTTGAT ACAGTTGTAC GTTTTGTTTT CATTTTTATC CTTTTGAGTG CTATGATGAT TTGGCATAGG GTAAATGAGC
TACGAATGAA TTCAAAAGTG ATTGAATGAT AACTTTTTTA CCTCTGCAAC AAGACATGTA TTGTAAAATG TACATTTTAC
AAGTGATTAT TTATGTGTAT TTTCTATACA GTCTAGCAGG AAGGAGCTAG CTACAGACAT TGAAGGACTG AAGAAGAAAA
TCACTGGAAC TGAATAGAAT GGTGTTAGCA AGTACCAAGT GAAGTTTATC TTCTGTGAGC ACCATTTGTT TTTGTTTGCT
CTTATCTGCT GTATAAGTAT GTATCCCGTG AAGTAGAATA GAATTCCTCT CAACCTCTAT TGCCCCTGTA ATGAACCCAT
TTCATTGTTA AAATAATGTA GCAAATTTTA TGTATATGGC TCTGAATGGA ACCATTATCT TTCCACTTCT TTCCTGTGTA
AGAAATTTAA GTGATATATG AGTATAGAAG GAGGAATTAT ATCATATATG GGACCAGTTG TTTCTGTGTC TAGACCATGA
TAGATTAAAG ATCTACTACC AGTTTAAAGC A

>Vigan.09G164400.01
ACATGTTCTT CTCTACTTTC TTTATTTTTT TTTATAAAAA TAAATATCTA TTGAATTTGA ATAGGAAGAA AGTGAGACCA
ACCAAAGTGC CAATTTCTTG GTTTGGGGAT AGATAGAGTG ATACCCATCA CACTGTTCAT ATTTCTCATA TTAATTAATA
ATAATAATGG CAGCGGCGGC GGCGGCAGTG ACGGTGCTAC TACCACCTAG GATTCCGACC ACCACCAACG TTACCCGCTG
TTCTGCTTTG CCTTCTCTGC CTCCACGTGT AACCAGCACC AGCACCACCT TGTTCTCACC TTCCCTCAAC CACTTTTCAG
TGTCCCGAAA ATCTTTTCTG CTTCAGACCA GAGCTTCTTC AGAGGAATCA TCCTCAGTAG ATGCCAATGA GTTGTTCACA
GATTTGAAGG AAAAGTGGGA TGCTGTTGAA AACAAGTCCA CAGTGCTTAT CTATGGTGGT GGGGCTTTAG TTGCTGTTTG
GCTATCTTCC ATTCTCGTGA GCGCAATCAA CTCAGTTCCC TTGCTTCCAA AGATCATGGA GTTGGTAGGT CTAGGATACA
CTGGATGGTT TGTCTACCGA TACCTTCTGT TCAAGTCTAG CAGGAAGGAG CTAGCTACAG ACATTGAAGG ACTGAAGAAG
AAAATCACTG GAACTGAATA GAATGGTGTT AGCAAGTACC AAGTGAAGTT TATCTTCTGT GAGCACCATT TGTTTTTGTT
TGCTCTTATC TGCTGTATAA GTATGTATCC CGTGAAGTAG AATAGAATTC CTCTCAACCT CTATTGCCCC TGTAATGAAC
CCATTTCATT GTTAAAATAA TGTAGCAAAT TTTATGTATA TGGCTCTGAA TGGAACCATT ATCTTTCCAC TTCTTTCCTG
TGTAAGAAAT TTAAGTGATA TATGAGTATA GAAGGAGGAA TTATATCATA TATGGGACCA GTTGTTTCTG TGTCTAGACC
ATGATAGATT AAAGATCTAC TACCAGTTTA AAGCA

>Vigan.09G164400.01
ATGGCAGCGG CGGCGGCGGC AGTGACGGTG CTACTACCAC CTAGGATTCC GACCACCACC AACGTTACCC GCTGTTCTGC
TTTGCCTTCT CTGCCTCCAC GTGTAACCAG CACCAGCACC ACCTTGTTCT CACCTTCCCT CAACCACTTT TCAGTGTCCC
GAAAATCTTT TCTGCTTCAG ACCAGAGCTT CTTCAGAGGA ATCATCCTCA GTAGATGCCA ATGAGTTGTT CACAGATTTG
AAGGAAAAGT GGGATGCTGT TGAAAACAAG TCCACAGTGC TTATCTATGG TGGTGGGGCT TTAGTTGCTG TTTGGCTATC
TTCCATTCTC GTGAGCGCAA TCAACTCAGT TCCCTTGCTT CCAAAGATCA TGGAGTTGGT AGGTCTAGGA TACACTGGAT
GGTTTGTCTA CCGATACCTT CTGTTCAAGT CTAGCAGGAA GGAGCTAGCT ACAGACATTG AAGGACTGAA GAAGAAAATC
ACTGGAACTG AATAG

>Vigan.09G164400.01
MAAAAAAVTV LLPPRIPTTT NVTRCSALPS LPPRVTSTST TLFSPSLNHF SVSRKSFLLQ TRASSEESSS VDANELFTDL
KEKWDAVENK STVLIYGGGA LVAVWLSSIL VSAINSVPLL PKIMELVGLG YTGWFVYRYL LFKSSRKELA TDIEGLKKKI
TGTE*